Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p030629 Quercus lobata HOM05D006190 ORTHO05D027094 1.6e-154 549.3 265 100.0
CiPaw.03G155000 Carya illinoinensis HOM05D006190 ORTHO05D008260 1.6e-40 170.6 86 95.3
Thecc.01G182400 Theobroma cacao HOM05D006190 ORTHO05D008260 6.2e-37 158.7 85 85.9
TWI36G1256 Tripterygium wilfordii HOM05D006190 ORTHO05D008260 6.2e-37 158.7 86 88.4
Dinv39750 Davidia involucrata HOM05D006190 ORTHO05D008260 8.1e-37 158.3 147 59.9
Gohir.A07G082100 Gossypium hirsutum HOM05D006190 ORTHO05D008260 8.1e-37 158.3 85 87.1
Eucgr.A01784 Eucalyptus grandis HOM05D006190 ORTHO05D008260 1.8e-36 157.1 86 83.7
Gohir.D07G088600 Gossypium hirsutum HOM05D006190 ORTHO05D008260 1.8e-36 157.1 85 85.9
Gorai.001G095000 Gossypium raimondii HOM05D006190 ORTHO05D008260 1.8e-36 157.1 85 85.9
Lj1A781G46 Lonicera japonica HOM05D006190 ORTHO05D008260 3.1e-36 156.4 86 83.7
RcHm_v2.0_Chr2g0158021 Rosa chinensis HOM05D006190 ORTHO05D008260 3.1e-36 156.4 86 87.2
Actinidia09748 Actinidia chinensis HOM05D006190 ORTHO05D008260 4.0e-36 156.0 86 86.0
CSS0039152 Camellia sinensis var. sinensis HOM05D006190 ORTHO05D008260 6.9e-36 155.2 85 84.7
Eucgr.K00752 Eucalyptus grandis HOM05D006190 ORTHO05D008260 6.9e-36 155.2 86 82.6
DCAR_019742 Daucus carota HOM05D006190 ORTHO05D008260 1.2e-35 154.5 86 83.7
ClCG09G011200 Citrullus lanatus HOM05D006190 ORTHO05D008260 1.5e-35 154.1 86 84.9
Potri.002G224300 Populus trichocarpa HOM05D006190 ORTHO05D008260 1.5e-35 154.1 86 84.9
CsaV3_6G037760 Cucumis sativus L. HOM05D006190 ORTHO05D008260 2.6e-35 153.3 86 83.7
Nitab4.5_0006063g0030 Nicotiana tabacum HOM05D006190 ORTHO05D008260 3.4e-35 152.9 82 86.6
Sopen05g026250 Solanum pennellii HOM05D006190 ORTHO05D008260 3.4e-35 152.9 86 81.4
FAN05G0691 Fragaria x ananassa HOM05D006190 ORTHO05D008260 4.5e-35 152.5 108 70.4
Prupe.3G210000 Prunus persica HOM05D006190 ORTHO05D008260 4.5e-35 152.5 86 83.7
MD17G1106200 Malus domestica HOM05D006190 ORTHO05D008260 5.8e-35 152.1 86 83.7
Oeu015049.1 Olea europaea HOM05D006190 ORTHO05D008260 7.6e-35 151.8 85 84.7
Nn1g07299 Nelumbo nucifera HOM05D006190 ORTHO05D008260 1.7e-34 150.6 86 81.4
Sc06g0009680 Simmondsia chinensis HOM05D006190 ORTHO05D008260 1.7e-34 150.6 86 81.4
Sed0027843 Sechium edule HOM05D006190 ORTHO05D008260 3.8e-34 149.4 86 81.4
GSVIVG01030506001 Vitis vinifera HOM05D006190 ORTHO05D008260 3.8e-34 149.4 84 85.7
FAN02G1605 Fragaria x ananassa HOM05D006190 ORTHO05D008260 4.9e-34 149.1 82 86.6
Rhsim04G0034400 Rhododendron simsii HOM05D006190 ORTHO05D008260 8.4e-34 148.3 85 81.2
FAN14G2650 Fragaria x ananassa HOM05D006190 ORTHO05D008260 1.1e-33 147.9 82 86.6
vmacro12161 Vaccinium macrocarpon HOM05D006190 ORTHO05D008260 1.9e-33 147.1 86 80.2
COL.COLO4_21885 Corchorus olitorius HOM05D006190 ORTHO05D008260 5.5e-33 145.6 85 77.6
Atru.chr6.3259 Acer truncatum HOM05D006190 ORTHO05D008260 1.2e-32 144.4 82 81.7
MD09G1114700 Malus domestica HOM05D006190 ORTHO05D008260 1.2e-32 144.4 83 80.7
Manes.13G065900 Manihot esculenta HOM05D006190 ORTHO05D008260 2.1e-32 143.7 85 81.2
Sabra02G0171700 Salix brachista HOM05D006190 ORTHO05D008260 2.1e-32 143.7 82 81.7
Os09g0296400 Oryza sativa ssp. japonica HOM05D006190 ORTHO05D008260 4.6e-32 142.5 126 58.7
EL10Ac8g20037 Beta vulgaris HOM05D006190 ORTHO05D008260 6.0e-32 142.1 86 75.6
HPP92_020505 Vanilla planifolia HOM05D006190 ORTHO05D008260 7.9e-32 141.7 86 80.2
Ciclev10017756m.g Citrus clementina HOM05D006190 ORTHO05D008260 1.3e-31 141.0 82 80.5
Ah.06g190910 Amaranthus hybridus HOM05D006190 ORTHO05D008260 2.3e-31 140.2 86 72.1
PSO675G0778 Papaver somniferum HOM05D006190 ORTHO05D008260 5.1e-31 139.0 85 76.5
PGR083G2874 Punica granatum HOM05D006190 ORTHO05D008260 5.1e-31 139.0 86 74.4
Phvul.011G111400 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 1.1e-30 137.9 86 73.3
ECA240G2645 Erigeron canadensis HOM05D006190 ORTHO05D008260 1.5e-30 137.5 86 72.1
unitig_46.g18456 Utricularia gibba HOM05D006190 ORTHO05D008260 1.5e-30 137.5 85 74.1
Aqoxy3G00055 Aquilegia oxysepala HOM05D006190 ORTHO05D008260 2.5e-30 136.7 86 75.6
PSO541G5374 Papaver somniferum HOM05D006190 ORTHO05D008260 3.3e-30 136.3 85 75.3
MSTRG.8117 Avicennia marina HOM05D006190 ORTHO05D008260 4.3e-30 136.0 86 73.3
Phvul.006G013000 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 4.3e-30 136.0 86 70.9
Migut.F01671 Erythranthe guttata HOM05D006190 ORTHO05D008260 1.3e-29 134.4 84 71.4
HanXRQChr03g0075981 Helianthus annuus HOM05D006190 ORTHO05D008260 3.7e-29 132.9 82 73.2
Lj6g0020329 Lotus japonicus HOM05D006190 ORTHO05D008260 3.7e-29 132.9 86 72.1
Carub.0004s1265 Capsella rubella HOM05D006190 ORTHO05D008260 6.2e-29 132.1 88 71.6
THA.LOC104798591 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 8.2e-29 131.7 86 73.3
THA.LOC104800883 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 8.2e-29 131.7 86 73.3
BcaC02g11229 Brassica carinata HOM05D006190 ORTHO05D008260 1.1e-28 131.3 88 71.6
Psat5g111200 Pisum sativum HOM05D006190 ORTHO05D008260 1.4e-28 131.0 86 73.3
TPR.G18389 Trifolium pratense HOM05D006190 ORTHO05D008260 2.4e-28 130.2 86 72.1
AL4G26570 Arabidopsis lyrata HOM05D006190 ORTHO05D008260 3.1e-28 129.8 86 72.1
AT2G31340 Arabidopsis thaliana HOM05D006190 ORTHO05D008260 3.1e-28 129.8 86 72.1
Sp4g13810 Schrenkiella parvula HOM05D006190 ORTHO05D008260 3.1e-28 129.8 86 72.1
ATR0736G101 Amborella trichopoda HOM05D006190 ORTHO05D008260 4.0e-28 129.4 88 67.0
Lalb_Chr04g0264321 Lupinus albus HOM05D006190 ORTHO05D008260 4.0e-28 129.4 82 73.2
arahy.Tifrunner.gnm1.ann1.5R2QIE Arachis hypogaea HOM05D006190 ORTHO05D008260 6.9e-28 128.6 86 72.1
Medtr3g080550 Medicago truncatula HOM05D006190 ORTHO05D008260 6.9e-28 128.6 86 70.9
Thhalv10016459m.g Eutrema salsugineum HOM05D006190 ORTHO05D008260 9.0e-28 128.3 86 70.9
arahy.Tifrunner.gnm1.ann1.BBUS42 Arachis hypogaea HOM05D006190 ORTHO05D008260 7.6e-27 125.2 86 69.8
Glyma.20G058400 Glycine max HOM05D006190 ORTHO05D008260 2.2e-26 123.6 82 69.5
Rhsim04G0027600 Rhododendron simsii HOM05D006190 ORTHO05D008260 2.7e-24 116.7 85 68.2
Rhsim06G0167400 Rhododendron simsii HOM05D006190 ORTHO05D008260 3.5e-24 116.3 85 68.2
SEGI_33791 Sequoiadendron giganteum HOM05D006190 ORTHO05D008260 2.3e-23 113.6 80 62.5
FvH4_6g42100 Fragaria vesca HOM05D006190 ORTHO05D008260 5.7e-22 109.0 60 85.0
Haze_12765 Corylus avellana HOM05D006190 ORTHO05D008260 2.4e-20 103.6 86 66.3
CDE07G0814 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 2.0e-19 100.5 66 68.2
Hund00609 Selenicereus undatus HOM05D006190 ORTHO05D008260 5.9e-19 99.0 50 86.0
Hund15364 Selenicereus undatus HOM05D006190 ORTHO05D027094 7.7e-19 98.6 50 86.0
Pp3c23_22000 Physcomitrium patens HOM05D006190 ORTHO05D008260 1.3e-18 97.8 82 54.9
Cfa014317 Carpinus fangiana HOM05D006190 ORTHO05D008260 1.1e-17 94.7 46 95.7
Nitab4.5_0000019g0350 Nicotiana tabacum HOM05D006190 ORTHO05D008260 1.4e-17 94.4 46 91.3
Solyc05g042120.4 Solanum lycopersicum HOM05D006190 ORTHO05D008260 5.5e-17 92.4 46 89.1
Peaxi162Scf00100g01525 Petunia axillaris HOM05D006190 ORTHO05D008260 9.4e-17 91.7 46 89.1
Mapoly0014s0084 Marchantia polymorpha HOM05D006190 ORTHO05D008260 1.2e-16 91.3 81 49.4
AUR62000500 Chenopodium quinoa HOM05D006190 ORTHO05D008260 2.7e-16 90.1 46 87.0
AUR62006846 Chenopodium quinoa HOM05D006190 ORTHO05D008260 2.7e-16 90.1 46 87.0
Cpa.g.sc132.24 Carica papaya HOM05D006190 ORTHO05D008260 3.6e-16 89.7 51 76.5
MELO3C014435.2 Cucumis melo HOM05D006190 ORTHO05D008260 3.0e-15 86.7 86 57.0
MBI19_g03678_MAGBIO Magnolia biondii HOM05D006190 ORTHO05D008260 3.3e-14 83.2 46 82.6
Zm00001eb309080 Zea mays HOM05D006190 ORTHO05D008260 4.3e-14 82.8 48 79.2
BcaB02g10385 Brassica carinata HOM05D006190 ORTHO05D008260 5.7e-14 82.4 48 79.2
Aa31LG5G5620 Aethionema arabicum HOM05D006190 ORTHO05D008260 2.8e-13 80.1 46 76.1
SGA_v2.0_scaffold13G06447 Striga asiatica HOM05D006190 ORTHO05D008260 3.7e-13 79.7 49 71.4
Ca_16289_v3 Cicer arietinum L. HOM05D006190 ORTHO05D008260 1.1e-12 78.2 46 80.4
BcaC02g11231 Brassica carinata HOM05D006190 ORTHO05D027094 3.4e-11 73.2 48 70.8
BcaC01g05972 Brassica carinata HOM05D006190 ORTHO05D008260 5.0e-10 69.3 39 79.5


User provided reference genes

Program Settings