Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 2.7e-291 1004.6 508 100.0
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 4.0e-242 841.3 511 86.1
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 3.3e-236 821.6 506 85.0
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 6.2e-235 817.4 513 83.4
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 1.0e-229 800.0 514 80.5
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 1.0e-229 800.0 515 79.8
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 4.7e-227 791.2 515 79.0
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 9.0e-226 786.9 516 78.5
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 9.9e-225 783.5 515 78.3
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 3.8e-224 781.6 517 79.1
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 4.2e-223 778.1 509 76.8
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 2.7e-222 775.4 517 78.1
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 2.3e-221 772.3 513 78.0
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 3.9e-221 771.5 512 77.7
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 3.9e-221 771.5 518 76.3
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 6.2e-219 764.2 518 75.5
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 9.0e-218 760.4 510 77.8
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 1.2e-217 760.0 510 78.2
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 3.4e-217 758.4 516 77.5
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 1.9e-215 752.7 516 75.4
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 1.3e-213 746.5 511 76.1
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 7.4e-212 740.7 514 73.5
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 8.1e-211 737.3 509 75.6
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 1.1e-210 736.9 511 75.7
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 3.1e-210 735.3 516 74.4
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 1.3e-208 729.9 517 74.5
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 4.9e-208 728.0 515 75.0
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 6.4e-208 727.6 511 72.4
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 1.9e-207 726.1 512 75.0
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 4.2e-207 724.9 524 72.5
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 9.3e-207 723.8 512 74.8
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 2.1e-206 722.6 512 75.0
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 7.9e-206 720.7 510 73.1
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 5.1e-205 718.0 514 73.5
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 1.5e-204 716.5 511 74.6
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 1.5e-204 716.5 517 73.5
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 1.9e-204 716.1 506 72.3
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 2.5e-204 715.7 517 72.5
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 3.3e-204 715.3 513 72.7
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 5.6e-204 714.5 517 72.0
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 5.6e-204 714.5 512 73.0
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 5.6e-204 714.5 512 73.8
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 9.6e-204 713.8 511 73.4
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 1.3e-203 713.4 507 72.8
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 2.8e-203 712.2 512 73.8
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 8.2e-203 710.7 505 72.9
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 1.1e-202 710.3 511 73.0
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 2.4e-202 709.1 514 74.1
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 3.1e-202 708.8 512 74.0
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 9.0e-202 707.2 512 73.2
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 2.0e-201 706.1 522 73.2
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 2.6e-201 705.7 506 71.7
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 4.5e-201 704.9 511 71.2
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 5.8e-201 704.5 519 71.9
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 1.7e-200 703.0 514 73.5
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 3.8e-200 701.8 510 74.3
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.1e-199 700.3 514 73.5
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 1.9e-199 699.5 520 71.9
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 3.2e-199 698.7 514 73.2
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 4.2e-199 698.4 519 70.5
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 5.5e-199 698.0 522 72.2
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 9.3e-199 697.2 513 73.5
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.1e-198 696.0 514 73.2
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 6.0e-198 694.5 511 73.2
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 6.0e-198 694.5 535 72.7
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 1.0e-197 693.7 524 72.1
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 1.5e-196 689.9 522 69.5
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 9.7e-196 687.2 518 69.9
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 2.8e-195 685.6 509 72.3
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 8.2e-195 684.1 512 73.4
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 1.1e-194 683.7 512 68.4
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 1.4e-194 683.3 510 73.3
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 2.6e-193 679.1 515 69.7
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 1.0e-192 677.2 509 70.7
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 9.4e-191 670.6 508 70.1
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 2.7e-190 669.1 508 69.3
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 6.1e-190 667.9 506 69.4
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 9.7e-188 660.6 514 67.5
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 9.7e-188 660.6 514 70.0
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 4.8e-187 658.3 517 67.5
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 1.1e-186 657.1 523 67.5
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 6.9e-186 654.4 511 70.5
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 9.1e-186 654.1 513 69.4
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 8.5e-184 647.5 526 67.5
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 2.5e-183 646.0 531 66.9
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 2.5e-183 646.0 521 67.4
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 3.2e-183 645.6 507 69.2
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 1.2e-182 643.7 524 66.6
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 2.1e-182 642.9 509 68.6
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 7.9e-182 641.0 507 68.8
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 1.0e-181 640.6 505 68.7
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 1.8e-181 639.8 467 72.4
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 2.3e-181 639.4 505 68.5
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 3.7e-179 632.1 513 66.1
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 1.5e-177 626.7 515 66.0
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 2.7e-174 615.9 521 64.9
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 1.4e-173 613.6 519 64.0
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 4.4e-172 608.6 467 68.3
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 1.1e-167 594.0 510 63.7
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 2.6e-164 582.8 535 61.3
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 2.2e-163 579.7 534 60.9
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 6.3e-163 578.2 457 67.8
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 1.4e-162 577.0 526 61.2
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 4.5e-161 572.0 513 63.5
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 4.7e-150 535.4 524 57.8
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 1.7e-144 516.9 520 56.7
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 2.3e-144 516.5 520 57.5
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 1.5e-143 513.8 517 57.3
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 1.7e-139 500.4 531 54.4
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 4.6e-137 492.3 511 56.2
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 1.6e-134 483.8 514 55.6
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 1.3e-131 474.2 513 55.4
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 1.1e-125 454.5 305 74.4
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 2.6e-124 449.9 540 50.4
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 5.4e-122 442.2 533 51.2
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 8.1e-110 401.7 291 72.2
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 4.0e-109 399.4 508 47.4
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 9.9e-100 368.2 509 48.3
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 1.0e-91 341.7 574 41.5
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 1.5e-63 248.1 284 50.7
Sed0013022 Sechium edule HOM05D005917 ORTHO05D007517 4.7e-57 226.5 201 65.7
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 1.3e-54 218.4 339 42.2
TPR.G18819 Trifolium pratense HOM05D005917 ORTHO05D007517 1.3e-46 191.8 289 43.6
Prupe.3G225800 Prunus persica HOM05D005917 ORTHO05D007517 2.2e-30 137.9 98 73.5
FAN14G5926 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.3e-24 117.9 86 69.8
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 2.3e-24 117.9 530 26.2
Cre11.g482050 Chlamydomonas reinhardtii HOM05D005917 ORTHO05D007517 6.0e-20 103.2 502 25.3
Manes.16G064350 Manihot esculenta HOM05D005917 ORTHO05D007517 7.8e-20 102.8 75 69.3
CAN.G244.10 Capsicum annuum HOM05D000180 ORTHO05D000099 1.1e-16 92.4 76 61.8
FAN02G4549 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.0e-15 88.2 65 67.7
Cfa024500 Carpinus fangiana HOM05D005917 ORTHO05D007517 2.2e-14 84.7 187 33.7
Nn6g32049 Nelumbo nucifera HOM05D005917 ORTHO05D007517 2.9e-14 84.3 66 65.2
Nn6g32048 Nelumbo nucifera HOM05D005917 ORTHO05D007517 1.9e-10 71.6 68 61.8
PRCOL_00002377 Prasinoderma coloniale HOM05D005917 ORTHO05D333437 7.6e-07 59.7 342 23.7


User provided reference genes

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