Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p028355 Quercus lobata HOM05D006200 ORTHO05D007569 3.2e-59 231.5 111 100.0
Haze_12649 Corylus avellana HOM05D006200 ORTHO05D007569 3.6e-55 218.0 111 93.7
Prupe.3G200400 Prunus persica HOM05D006200 ORTHO05D007569 6.2e-55 217.2 111 91.9
Hma1.2p1_0545F.1_g176060 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 1.1e-54 216.5 111 91.0
CSS0021565 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 1.4e-54 216.1 111 90.1
MD09G1123700 Malus domestica HOM05D006200 ORTHO05D007569 1.4e-54 216.1 111 91.9
Actinidia09782 Actinidia chinensis HOM05D006200 ORTHO05D007569 4.0e-54 214.5 111 90.1
Nn1g07469 Nelumbo nucifera HOM05D006200 ORTHO05D007569 4.0e-54 214.5 111 91.0
Nitab4.5_0001774g0080 Nicotiana tabacum HOM05D006200 ORTHO05D007569 1.5e-53 212.6 111 90.1
Potri.014G164500 Populus trichocarpa HOM05D006200 ORTHO05D007569 1.5e-53 212.6 111 89.2
CAN.G1036.6 Capsicum annuum HOM05D006200 ORTHO05D007569 3.4e-53 211.5 111 89.2
CiPaw.04G196600 Carya illinoinensis HOM05D006200 ORTHO05D007569 3.4e-53 211.5 111 91.0
Ciclev10017136m.g Citrus clementina HOM05D006200 ORTHO05D007569 4.4e-53 211.1 111 88.3
Atru.chr6.3355 Acer truncatum HOM05D006200 ORTHO05D007569 5.8e-53 210.7 111 88.3
Cfa014235 Carpinus fangiana HOM05D000160 ORTHO05D000496 9.9e-53 209.9 111 90.1
LjContig00029g0002447 Lotus japonicus HOM05D006200 ORTHO05D007569 9.9e-53 209.9 111 87.4
Medtr5g085420 Medicago truncatula HOM05D006200 ORTHO05D007569 9.9e-53 209.9 111 87.4
Peaxi162Scf00776g00024 Petunia axillaris HOM05D006200 ORTHO05D007569 1.3e-52 209.5 111 89.2
Rhsim04G0037800 Rhododendron simsii HOM05D006200 ORTHO05D007569 1.3e-52 209.5 111 87.4
PGSC0003DMG400006126 Solanum tuberosum HOM05D006200 ORTHO05D007569 1.3e-52 209.5 111 86.5
Glyma.14G048700 Glycine max HOM05D006200 ORTHO05D007569 2.2e-52 208.8 111 86.5
Rhsim02G0017500 Rhododendron simsii HOM05D006200 ORTHO05D007569 2.9e-52 208.4 111 86.5
TAR626G0047 Trochodendron aralioides HOM05D006200 ORTHO05D007569 2.9e-52 208.4 111 86.5
MSTRG.14921 Avicennia marina HOM05D006200 ORTHO05D007569 3.8e-52 208.0 111 86.5
Glyma.02G268700 Glycine max HOM05D006200 ORTHO05D007569 3.8e-52 208.0 111 86.5
Hma1.2p1_2053F.1_g312740 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 4.9e-52 207.6 111 86.5
Lalb_Chr04g0250001 Lupinus albus HOM05D006200 ORTHO05D007569 6.4e-52 207.2 111 86.5
ClCG02G002790 Citrullus lanatus HOM05D006200 ORTHO05D007569 8.4e-52 206.8 111 87.4
Dinv05360 Davidia involucrata HOM05D006200 ORTHO05D007569 1.1e-51 206.5 111 86.5
MD17G1114500 Malus domestica HOM05D006200 ORTHO05D007569 1.1e-51 206.5 111 88.3
Psat2g026360 Pisum sativum HOM05D006200 ORTHO05D007569 1.1e-51 206.5 111 85.6
SGA_v2.0_scaffold181G39681 Striga asiatica HOM05D006200 ORTHO05D007569 1.1e-51 206.5 111 85.6
Solyc07g047700.4 Solanum lycopersicum HOM05D006200 ORTHO05D007569 1.9e-51 205.7 111 84.7
Sopen07g024150 Solanum pennellii HOM05D006200 ORTHO05D007569 2.4e-51 205.3 111 84.7
arahy.Tifrunner.gnm1.ann1.GBED9Y Arachis hypogaea HOM05D006200 ORTHO05D007569 3.2e-51 204.9 111 85.6
HPP92_012226 Vanilla planifolia HOM05D006200 ORTHO05D007569 3.2e-51 204.9 111 85.6
Carub.0003s2650 Capsella rubella HOM05D006200 ORTHO05D007569 4.1e-51 204.5 111 84.7
FvH4_6g40890 Fragaria vesca HOM05D006200 ORTHO05D007569 5.4e-51 204.1 111 85.6
TPR.G25628 Trifolium pratense HOM05D006200 ORTHO05D007569 7.1e-51 203.8 109 85.3
Manes.13G063700 Manihot esculenta HOM05D006200 ORTHO05D007569 1.2e-50 203.0 111 85.6
FAN02G1931 Fragaria x ananassa HOM05D006200 ORTHO05D007569 1.6e-50 202.6 111 84.7
SalBow7G0450 Salvia bowleyana HOM05D006200 ORTHO05D007569 1.6e-50 202.6 111 82.9
ATR0624G019 Amborella trichopoda HOM05D006200 ORTHO05D007569 2.7e-50 201.8 111 84.7
AL3G42530 Arabidopsis lyrata HOM05D006200 ORTHO05D007569 2.7e-50 201.8 111 84.7
AT2G04900 Arabidopsis thaliana HOM05D006200 ORTHO05D007569 2.7e-50 201.8 111 84.7
CDE07G1212 Ceratophyllum demersum HOM05D006200 ORTHO05D007569 2.7e-50 201.8 111 82.9
RcHm_v2.0_Chr2g0156461 Rosa chinensis HOM05D006200 ORTHO05D007569 2.7e-50 201.8 111 85.6
Sed0007295 Sechium edule HOM05D006200 ORTHO05D007569 2.7e-50 201.8 111 85.6
TWI36G1668 Tripterygium wilfordii HOM05D006200 ORTHO05D007569 2.7e-50 201.8 110 83.6
C07p10040 Brassica napus HOM05D006200 ORTHO05D007569 3.5e-50 201.4 111 84.7
BraA07t28456Z Brassica rapa HOM05D006200 ORTHO05D007569 3.5e-50 201.4 111 84.7
Thhalv10002727m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 3.5e-50 201.4 111 84.7
Lsat_1_v5_gn_5_121761 Lactuca sativa HOM05D006200 ORTHO05D007569 3.5e-50 201.4 111 83.8
Oeu040457.1 Olea europaea HOM05D006200 ORTHO05D007569 3.5e-50 201.4 111 82.9
BcaB06g26789 Brassica carinata HOM05D006200 ORTHO05D007569 4.6e-50 201.1 111 84.7
Sp3g23500 Schrenkiella parvula HOM05D006200 ORTHO05D007569 6.0e-50 200.7 111 83.8
THA.LOC104815354 Tarenaya hassleriana HOM05D006200 ORTHO05D007569 6.0e-50 200.7 111 83.8
CARHR102920 Cardamine hirsuta HOM05D006200 ORTHO05D007569 7.8e-50 200.3 111 83.8
BcaC06g35887 Brassica carinata HOM05D006200 ORTHO05D007569 1.0e-49 199.9 111 83.8
BolC7t41451H Brassica oleracea HOM05D006200 ORTHO05D007569 1.0e-49 199.9 111 83.8
Cc05_g02100 Coffea canephora HOM05D006200 ORTHO05D007569 1.0e-49 199.9 111 83.8
MELO3C024201.2 Cucumis melo HOM05D006200 ORTHO05D007569 1.0e-49 199.9 116 83.6
Aqoxy4G02230 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 1.3e-49 199.5 111 83.8
A07p06630 Brassica napus HOM05D006200 ORTHO05D007569 1.3e-49 199.5 111 83.8
PSO541G4622 Papaver somniferum HOM05D006200 ORTHO05D007569 1.3e-49 199.5 111 82.0
PSO675G7132 Papaver somniferum HOM05D006200 ORTHO05D007569 2.3e-49 198.7 111 81.1
Migut.M00041 Erythranthe guttata HOM05D006200 ORTHO05D007569 3.9e-49 198.0 111 82.9
Sed0012997 Sechium edule HOM05D006200 ORTHO05D007569 6.6e-49 197.2 109 85.3
HanXRQChr10g0306841 Helianthus annuus HOM05D006200 ORTHO05D007569 8.7e-49 196.8 111 82.0
Cc02_g04700 Coffea canephora HOM05D006200 ORTHO05D007569 3.3e-48 194.9 111 80.2
FAN09G2038 Fragaria x ananassa HOM05D006200 ORTHO05D007569 5.6e-48 194.1 126 75.4
FAN05G3226 Fragaria x ananassa HOM05D006200 ORTHO05D007569 1.6e-47 192.6 126 74.6
FAN14G5749 Fragaria x ananassa HOM05D006200 ORTHO05D007569 1.6e-47 192.6 126 74.6
Os03g0751000 Oryza sativa ssp. japonica HOM05D006200 ORTHO05D007569 1.6e-47 192.6 110 80.9
CSS0018696 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 2.1e-47 192.2 99 90.9
vmacro09406 Vaccinium macrocarpon HOM05D006200 ORTHO05D007569 3.6e-47 191.4 144 67.4
Zm00001eb057520 Zea mays HOM05D006200 ORTHO05D007569 3.6e-47 191.4 110 80.9
CANSAT64G0383 Cannabis sativa HOM05D006200 ORTHO05D007569 1.8e-46 189.1 111 77.5
Cpa.g.sc136.18 Carica papaya HOM05D006200 ORTHO05D007569 1.8e-46 189.1 111 77.5
Aa31sc107G30 Aethionema arabicum HOM05D006200 ORTHO05D007569 2.0e-45 185.7 141 66.7
Thecc.01G190500 Theobroma cacao HOM05D006200 ORTHO05D007569 3.4e-45 184.9 106 79.2
Manes.12G061800 Manihot esculenta HOM05D006200 ORTHO05D007569 1.3e-44 183.0 111 77.5
Gohir.A07G167000 Gossypium hirsutum HOM05D006200 ORTHO05D007569 2.9e-44 181.8 106 78.3
Gohir.D07G172300 Gossypium hirsutum HOM05D006200 ORTHO05D007569 2.9e-44 181.8 106 78.3
Gorai.001G192600 Gossypium raimondii HOM05D006200 ORTHO05D007569 2.9e-44 181.8 106 78.3
Sabra14G0125300 Salix brachista HOM05D006200 ORTHO05D007569 4.9e-44 181.0 138 64.5
Duzib138G0810 Durio zibethinus HOM05D006200 ORTHO05D007569 6.4e-44 180.6 111 73.9
Lj8A134G80 Lonicera japonica HOM05D006200 ORTHO05D007569 6.4e-44 180.6 97 86.6
GSVIVG01030518001 Vitis vinifera HOM05D006200 ORTHO05D007569 8.4e-44 180.3 106 76.4
GSVIVG01030523001 Vitis vinifera HOM05D006200 ORTHO05D007569 8.4e-44 180.3 106 76.4
Zm00001eb181090 Zea mays HOM05D006200 ORTHO05D007569 1.1e-43 179.9 109 78.9
SEGI_07661 Sequoiadendron giganteum HOM05D006200 ORTHO05D007569 3.5e-42 174.9 111 73.0
Eucgr.A01040 Eucalyptus grandis HOM05D006200 ORTHO05D007569 6.0e-42 174.1 105 78.1
ECA234G3013 Erigeron canadensis HOM05D006200 ORTHO05D007569 1.9e-40 169.1 97 81.4
AUR62029092 Chenopodium quinoa HOM05D006200 ORTHO05D007569 1.6e-39 166.0 95 78.9
Zm00001eb025380 Zea mays HOM05D006200 ORTHO05D007569 2.1e-39 165.6 127 66.1
MBI16_g28733_MAGBIO Magnolia biondii HOM05D006200 ORTHO05D007569 1.1e-38 163.3 98 77.6
COL.COLO4_33018 Corchorus olitorius HOM05D006200 ORTHO05D007569 1.4e-38 162.9 154 53.2
Mapoly0007s0279 Marchantia polymorpha HOM05D006200 ORTHO05D007569 8.4e-36 153.7 110 63.6
arahy.Tifrunner.gnm1.ann1.HJ95Y2 Arachis hypogaea HOM05D006200 ORTHO05D007569 7.9e-34 147.1 79 84.8
Phvul.008G213600 Phaseolus vulgaris HOM05D006200 ORTHO05D007569 1.0e-33 146.7 79 83.5
Zm00001eb402120 Zea mays HOM05D006200 ORTHO05D007569 1.3e-33 146.4 109 67.9
SMO356G0472 Selaginella moellendorffii HOM05D006200 ORTHO05D007569 3.0e-33 145.2 88 71.6
Pp3c6_18880 Physcomitrium patens HOM05D006200 ORTHO05D007569 3.9e-33 144.8 108 58.3
DCAR_021101 Daucus carota HOM05D006200 ORTHO05D007569 1.1e-32 143.3 79 81.0
Pp3c6_18900 Physcomitrium patens HOM05D006200 ORTHO05D007569 2.8e-31 138.7 97 66.0
CsaV3_7G002590 Cucumis sativus L. HOM05D006200 ORTHO05D007569 3.1e-30 135.2 74 87.8
MSTRG.6639 Avicennia marina HOM05D006200 ORTHO05D007569 1.7e-28 129.4 74 83.8
Zm00001eb093000 Zea mays HOM05D006200 ORTHO05D007569 9.3e-27 123.6 109 59.6
Cre12.g543050 Chlamydomonas reinhardtii HOM05D006200 ORTHO05D007569 3.5e-26 121.7 107 50.5
Thhalv10009367m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 7.9e-26 120.6 64 82.8
SHI10134 Sapria himalayana HOM05D006200 ORTHO05D007569 1.0e-25 120.2 82 69.5
Thhalv10016039m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 1.3e-25 119.8 64 81.2
Thhalv10023849m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 2.3e-25 119.0 64 81.2
AUR62015021 Chenopodium quinoa HOM05D006200 ORTHO05D007569 5.1e-25 117.9 64 78.1
Thhalv10027363m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 1.9e-24 115.9 64 79.7
Zm00001eb414470 Zea mays HOM05D006200 ORTHO05D007569 2.5e-24 115.5 68 80.9
PGR042G1757 Punica granatum HOM05D006200 ORTHO05D007569 4.3e-24 114.8 64 79.7
AagrBONN_evm.TU.Sc2ySwM_368.977 Anthoceros agrestis HOM05D006200 ORTHO05D007569 4.0e-22 108.2 64 67.2
Ah.01g013830 Amaranthus hybridus HOM05D004982 ORTHO05D007569 9.0e-22 107.1 63 73.0
MD17G1249100 Malus domestica HOM05D006200 ORTHO05D007569 1.9e-19 99.4 50 88.0
Pp3c16_4930 Physcomitrium patens HOM05D006200 ORTHO05D007569 1.6e-18 96.3 106 48.1
Pp3c16_5110 Physcomitrium patens HOM05D006200 ORTHO05D007569 1.6e-18 96.3 106 48.1
Hund21568 Selenicereus undatus HOM05D006200 ORTHO05D007569 5.7e-16 87.8 151 40.4
Zm00001eb125940 Zea mays HOM05D000001 ORTHO05D007569 1.5e-13 79.7 45 84.4
Aqoxy5G00520 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 3.4e-13 78.6 40 87.5
RcHm_v2.0_Chr5g0026981 Rosa chinensis HOM05D006200 ORTHO05D007569 1.0e-09 67.0 37 75.7
C03p34670 Brassica napus HOM05D006200 ORTHO05D007569 5.1e-09 64.7 49 71.4
BolC3t15778H Brassica oleracea HOM05D006200 ORTHO05D007569 5.1e-09 64.7 49 71.4
TAR375G0899 Trochodendron aralioides HOM05D000612 ORTHO05D030704 3.1e-06 55.5 65 47.7


User provided reference genes

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