Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p026533 Quercus lobata HOM05D008293 ORTHO05D010504 1.0e-276 956.1 477 100.0
Haze_09337 Corylus avellana HOM05D008293 ORTHO05D010504 4.1e-188 661.8 473 75.1
Dinv14981 Davidia involucrata HOM05D008293 ORTHO05D010504 2.0e-182 642.9 483 69.8
Prupe.4G167100 Prunus persica HOM05D008293 ORTHO05D010504 2.8e-181 639.0 477 70.4
GSVIVG01014211001 Vitis vinifera HOM05D008293 ORTHO05D010504 1.7e-178 629.8 473 70.8
TAR627G0720 Trochodendron aralioides HOM05D008293 ORTHO05D010504 1.9e-177 626.3 482 68.3
MD03G1241800 Malus domestica HOM05D008293 ORTHO05D010504 1.4e-175 620.2 463 69.3
Hma1.2p1_2505F.1_g323420 Hydrangea macrophylla HOM05D008293 ORTHO05D010504 2.2e-173 612.8 430 73.0
CSS0000482 Camellia sinensis var. sinensis HOM05D008293 ORTHO05D010504 4.8e-173 611.7 464 69.2
Atru.chr2.2164 Acer truncatum HOM05D008293 ORTHO05D010504 9.1e-172 607.4 430 71.4
Actinidia18798 Actinidia chinensis HOM05D008293 ORTHO05D010504 2.7e-171 605.9 457 68.7
Thecc.07G109900 Theobroma cacao HOM05D008293 ORTHO05D010504 5.0e-170 601.7 463 67.4
Rhsim04G0025400 Rhododendron simsii HOM05D008293 ORTHO05D010504 5.5e-169 598.2 472 66.5
CANSAT35G0405 Cannabis sativa HOM05D008293 ORTHO05D010504 1.0e-167 594.0 471 65.8
COL.COLO4_24863 Corchorus olitorius HOM05D008293 ORTHO05D010504 1.5e-166 590.1 439 68.6
Gohir.A13G148900 Gossypium hirsutum HOM05D008293 ORTHO05D010504 5.4e-164 581.6 443 67.0
Gohir.D13G153400 Gossypium hirsutum HOM05D008293 ORTHO05D010504 1.2e-163 580.5 460 65.7
PGR083G2613 Punica granatum HOM05D008293 ORTHO05D010504 1.6e-163 580.1 442 67.4
Gorai.013G173300 Gossypium raimondii HOM05D008293 ORTHO05D010504 2.5e-161 572.8 462 65.2
Sopen07g030780 Solanum pennellii HOM05D008293 ORTHO05D010504 8.0e-160 567.8 440 66.8
Peaxi162Scf00069g02232 Petunia axillaris HOM05D008293 ORTHO05D010504 1.8e-159 566.6 439 66.7
Migut.M00735 Erythranthe guttata HOM05D008293 ORTHO05D010504 1.5e-158 563.5 469 63.3
Nitab4.5_0000246g0170 Nicotiana tabacum HOM05D008293 ORTHO05D010504 2.0e-158 563.1 472 63.1
PGSC0003DMG400012428 Solanum tuberosum HOM05D008293 ORTHO05D010504 2.2e-157 559.7 430 67.2
Nitab4.5_0001145g0060 Nicotiana tabacum HOM05D008293 ORTHO05D010504 4.9e-157 558.5 467 64.7
PSO782G2569 Papaver somniferum HOM05D008293 ORTHO05D010504 8.3e-157 557.8 445 65.2
CAN.G162.9 Capsicum annuum HOM05D008293 ORTHO05D010504 7.0e-156 554.7 433 67.0
Aqoxy4G00368 Aquilegia oxysepala HOM05D008293 ORTHO05D010504 4.6e-155 552.0 454 64.1
Ciclev10020583m.g Citrus clementina HOM05D008293 ORTHO05D010504 4.7e-152 542.0 383 71.5
Nn1g09105 Nelumbo nucifera HOM05D008293 ORTHO05D010504 3.7e-141 505.8 478 59.0
AagrBONN_evm.TU.Sc2ySwM_344.4932 Anthoceros agrestis HOM05D008293 ORTHO05D010504 8.1e-136 488.0 427 58.8
Cc05_g11210 Coffea canephora HOM05D008293 ORTHO05D010504 1.4e-135 487.3 378 65.9
HPP92_024759 Vanilla planifolia HOM05D008293 ORTHO05D010504 2.9e-133 479.6 436 58.5
Pp3c19_10600 Physcomitrium patens HOM05D008293 ORTHO05D010504 1.1e-129 467.6 425 56.5
Pp3c22_22050 Physcomitrium patens HOM05D008293 ORTHO05D010504 2.8e-128 463.0 424 56.6
Mapoly0032s0102 Marchantia polymorpha HOM05D008293 ORTHO05D010504 3.1e-127 459.5 430 56.3
RcHm_v2.0_Chr5g0030831 Rosa chinensis HOM05D008293 ORTHO05D010504 2.2e-125 453.4 356 65.4
SGA_v2.0_scaffold55G19705 Striga asiatica HOM05D008293 ORTHO05D010504 4.2e-124 449.1 439 57.4
Solyc07g062543.1 Solanum lycopersicum HOM05D008293 ORTHO05D010504 1.2e-123 447.6 346 66.2
SMO118G0404 Selaginella moellendorffii HOM05D008293 ORTHO05D010504 1.0e-122 444.5 429 55.7
Ciclev10023335m.g Citrus clementina HOM05D008293 ORTHO05D010504 1.8e-119 433.7 419 57.5
Lj1A831T70 Lonicera japonica HOM05D008293 ORTHO05D010504 1.9e-100 370.5 259 71.8
PRCOL_00003950 Prasinoderma coloniale HOM05D008293 ORTHO05D010504 1.0e-98 364.8 432 48.4
RcHm_v2.0_Chr5g0031211 Rosa chinensis HOM05D008293 ORTHO05D010504 6.7e-98 362.1 357 57.4
CBR_g40882 Chara braunii HOM05D008293 ORTHO05D010504 2.1e-96 357.1 427 46.4
SEGI_20639 Sequoiadendron giganteum HOM05D008293 ORTHO05D010504 4.8e-88 329.3 290 59.3
Cpa.g.sc97.100 Carica papaya HOM05D008293 ORTHO05D010504 2.6e-78 297.0 203 72.4
RcHm_v2.0_Chr7g0194341 Rosa chinensis HOM05D008293 ORTHO05D010504 3.9e-74 283.1 233 64.4
RcHm_v2.0_Chr5g0031411 Rosa chinensis HOM05D008293 ORTHO05D010504 2.0e-65 254.2 221 61.1
Atru.chr2.2165 Acer truncatum HOM05D003516 ORTHO05D004068 2.2e-64 250.8 187 70.1
Cfa019577 Carpinus fangiana HOM05D008293 ORTHO05D010504 1.2e-57 228.4 164 75.0
Lj1P831T51 Lonicera japonica HOM05D008293 ORTHO05D010504 3.2e-52 210.3 183 64.5
Ca_29004_v3 Cicer arietinum L. HOM05D008293 ORTHO05D010504 1.3e-48 198.4 247 46.2
Solyc07g062547.1 Solanum lycopersicum HOM05D008293 ORTHO05D010504 3.5e-46 190.3 180 61.1
MD10G1199100 Malus domestica HOM05D008293 ORTHO05D010504 2.0e-41 174.5 171 55.0
AagrBONN_evm.TU.Sc2ySwM_344.893 Anthoceros agrestis HOM05D008293 ORTHO05D010504 1.3e-40 171.8 142 61.3
SEGI_30761 Sequoiadendron giganteum HOM05D008293 ORTHO05D010504 3.7e-32 143.7 147 51.7
Actinidia35215 Actinidia chinensis HOM05D008293 ORTHO05D010504 5.2e-26 123.2 291 34.7
Ca_29048_v3 Cicer arietinum L. HOM05D008293 ORTHO05D010504 4.6e-14 83.6 101 40.6
Sopen06g001050 Solanum pennellii HOM05D008293 ORTHO05D023155 3.0e-13 80.9 85 51.8
RcHm_v2.0_Chr5g0030641 Rosa chinensis HOM05D008293 ORTHO05D010504 4.0e-10 70.5 71 54.9
SEGI_40959 Sequoiadendron giganteum HOM05D008293 ORTHO05D386060 1.1e-07 62.4 65 46.2
Manes.05G046900 Manihot esculenta HOM05D003566 ORTHO05D005288 2.7e-06 57.8 373 25.5


User provided reference genes

Program Settings