Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p026242 Quercus lobata HOM05D000718 ORTHO05D007431 5.6e-278 960.3 479 100.0
Haze_09324 Corylus avellana HOM05D000718 ORTHO05D007431 1.1e-217 760.0 497 80.7
Cfa019567 Carpinus fangiana HOM05D000718 ORTHO05D007431 1.8e-212 742.7 468 82.3
CiPaw.11G160400 Carya illinoinensis HOM05D000718 ORTHO05D007431 5.9e-211 737.6 476 79.4
COL.COLO4_17547 Corchorus olitorius HOM05D000718 ORTHO05D007431 9.7e-206 720.3 472 76.7
MD03G1243500 Malus domestica HOM05D000718 ORTHO05D007431 5.9e-203 711.1 469 76.3
GSVIVG01014199001 Vitis vinifera HOM05D000718 ORTHO05D007431 1.5e-201 706.4 470 75.5
Prupe.4G164800 Prunus persica HOM05D000718 ORTHO05D007431 8.0e-200 700.7 471 75.2
FAN16G1727 Fragaria x ananassa HOM05D000718 ORTHO05D007431 1.0e-199 700.3 470 74.9
Dinv18364 Davidia involucrata HOM05D000718 ORTHO05D007431 1.3e-197 693.3 472 74.8
FvH4_3g18310 Fragaria vesca HOM05D000718 ORTHO05D007431 1.4e-196 689.9 470 73.8
CANSAT35G0289 Cannabis sativa HOM05D000718 ORTHO05D007431 2.4e-196 689.1 471 74.1
RcHm_v2.0_Chr5g0030941 Rosa chinensis HOM05D000718 ORTHO05D007431 7.0e-196 687.6 470 73.8
FAN25G1161 Fragaria x ananassa HOM05D000718 ORTHO05D007431 4.5e-195 684.9 470 73.2
Thecc.07G114900 Theobroma cacao HOM05D000718 ORTHO05D007431 4.5e-195 684.9 471 73.5
Lj3g0001987 Lotus japonicus HOM05D000718 ORTHO05D007431 5.9e-195 684.5 477 73.2
Ca_12194_v3 Cicer arietinum L. HOM05D000718 ORTHO05D007431 5.0e-194 681.4 476 72.3
Glyma.12G157600 Glycine max HOM05D000718 ORTHO05D007431 1.1e-193 680.2 472 72.5
TPR.G16488 Trifolium pratense HOM05D000718 ORTHO05D007431 4.2e-193 678.3 476 72.1
THA.LOC104822564 Tarenaya hassleriana HOM05D000718 ORTHO05D007431 9.4e-193 677.2 473 71.9
Duzib187G1570 Durio zibethinus HOM05D000718 ORTHO05D007431 1.2e-192 676.8 472 72.7
Lj1A829G32 Lonicera japonica HOM05D000718 ORTHO05D007431 3.6e-192 675.2 472 72.0
Actinidia12577 Actinidia chinensis HOM05D000718 ORTHO05D007431 2.3e-191 672.5 461 73.8
arahy.Tifrunner.gnm1.ann1.6IHZ0U Arachis hypogaea HOM05D000718 ORTHO05D007431 2.3e-191 672.5 477 72.1
Glyma.06G228900 Glycine max HOM05D000718 ORTHO05D007431 2.3e-191 672.5 472 71.2
Rhsim06G0207800 Rhododendron simsii HOM05D000718 ORTHO05D007431 2.3e-191 672.5 469 71.4
FAN11G0057 Fragaria x ananassa HOM05D000718 ORTHO05D007431 4.0e-191 671.8 470 72.8
Psat0s1037g0040 Pisum sativum HOM05D000718 ORTHO05D007431 8.8e-191 670.6 477 72.1
PGR031G2045 Punica granatum HOM05D000718 ORTHO05D007431 8.8e-191 670.6 471 73.0
AUR62042779 Chenopodium quinoa HOM05D000718 ORTHO05D007431 2.2e-189 666.0 472 70.8
Lalb_Chr01g0006831 Lupinus albus HOM05D000718 ORTHO05D007431 4.8e-189 664.8 473 71.9
TWI39G0589 Tripterygium wilfordii HOM05D000718 ORTHO05D007431 1.8e-188 662.9 470 71.1
arahy.Tifrunner.gnm1.ann1.STN4DM Arachis hypogaea HOM05D000718 ORTHO05D007431 2.4e-188 662.5 472 71.8
vmacro23465 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 3.1e-188 662.1 473 70.2
Medtr8g464030 Medicago truncatula HOM05D000718 ORTHO05D007431 7.0e-188 661.0 517 66.9
Phvul.011G162200 Phaseolus vulgaris HOM05D000718 ORTHO05D007431 1.6e-187 659.8 476 70.2
CARHR089850 Cardamine hirsuta HOM05D000718 ORTHO05D007431 3.5e-187 658.7 472 71.0
Atru.chr2.2147 Acer truncatum HOM05D000718 ORTHO05D007431 4.5e-187 658.3 474 71.9
Eucgr.K01884 Eucalyptus grandis HOM05D000718 ORTHO05D007431 1.0e-186 657.1 470 70.2
Carub.0003s1457 Capsella rubella HOM05D000718 ORTHO05D007431 1.1e-185 653.7 472 69.9
Potri.001G390700 Populus trichocarpa HOM05D000718 ORTHO05D007431 2.5e-185 652.5 473 69.8
AL3G27230 Arabidopsis lyrata HOM05D000718 ORTHO05D007431 1.6e-184 649.8 472 69.7
Thhalv10020708m.g Eutrema salsugineum HOM05D000718 ORTHO05D007431 8.0e-184 647.5 472 69.7
ClCG11G017460 Citrullus lanatus HOM05D000718 ORTHO05D007431 3.0e-183 645.6 470 69.4
MELO3C025639.2 Cucumis melo HOM05D000718 ORTHO05D007431 6.8e-183 644.4 471 69.4
Gohir.A01G054400 Gossypium hirsutum HOM05D000718 ORTHO05D007431 6.8e-183 644.4 471 69.6
AT3G14910 Arabidopsis thaliana HOM05D000718 ORTHO05D007431 2.0e-182 642.9 472 68.6
BolC5t33913H Brassica oleracea HOM05D000718 ORTHO05D007431 2.6e-182 642.5 472 69.5
Gorai.002G054700 Gossypium raimondii HOM05D000718 ORTHO05D007431 4.4e-182 641.7 471 69.0
Gohir.D01G042724 Gossypium hirsutum HOM05D000718 ORTHO05D007431 1.3e-181 640.2 471 68.8
Aa31LG8G2120 Aethionema arabicum HOM05D000718 ORTHO05D007431 3.7e-181 638.6 466 69.5
PGSC0003DMG400007071 Solanum tuberosum HOM05D000718 ORTHO05D007431 4.9e-181 638.3 472 69.3
DCAR_013156 Daucus carota HOM05D000718 ORTHO05D007431 6.3e-181 637.9 471 69.2
Lalb_Chr03g0031171 Lupinus albus HOM05D000718 ORTHO05D007431 8.3e-181 637.5 480 69.0
Migut.H01998 Erythranthe guttata HOM05D000718 ORTHO05D007431 2.4e-180 636.0 478 68.6
A05p34500 Brassica napus HOM05D000718 ORTHO05D007431 3.1e-180 635.6 467 69.2
BraA05t22270Z Brassica rapa HOM05D000718 ORTHO05D007431 3.1e-180 635.6 467 69.2
Sopen07g030690 Solanum pennellii HOM05D000718 ORTHO05D007431 7.0e-180 634.4 472 69.1
Oeu025333.1 Olea europaea HOM05D000718 ORTHO05D007431 9.1e-180 634.0 471 68.6
Solyc07g062450.3 Solanum lycopersicum HOM05D000718 ORTHO05D007431 2.0e-179 632.9 472 68.6
Nitab4.5_0006953g0050 Nicotiana tabacum HOM05D000718 ORTHO05D007431 2.7e-179 632.5 472 68.4
SalBow7G4376 Salvia bowleyana HOM05D000718 ORTHO05D007431 2.7e-179 632.5 476 68.5
Nitab4.5_0003565g0040 Nicotiana tabacum HOM05D000718 ORTHO05D007431 4.5e-179 631.7 472 68.4
Peaxi162Scf00111g01475 Petunia axillaris HOM05D000718 ORTHO05D007431 5.9e-179 631.3 471 68.6
Sed0007644 Sechium edule HOM05D000718 ORTHO05D007431 5.9e-179 631.3 470 67.2
SalBow7G4178 Salvia bowleyana HOM05D000718 ORTHO05D007431 7.7e-179 630.9 476 68.3
BcaB06g25332 Brassica carinata HOM05D000718 ORTHO05D007431 8.6e-178 627.5 464 69.2
Ah.04g164270 Amaranthus hybridus HOM05D000718 ORTHO05D007431 1.1e-177 627.1 472 68.0
CAN.G375.14 Capsicum annuum HOM05D000718 ORTHO05D007431 4.2e-177 625.2 481 66.9
Cc05_g11090 Coffea canephora HOM05D000718 ORTHO05D007431 1.6e-176 623.2 473 69.1
EL10Ac4g08344 Beta vulgaris HOM05D000718 ORTHO05D007431 4.7e-176 621.7 472 66.9
Aqoxy4G00321 Aquilegia oxysepala HOM05D000718 ORTHO05D007431 2.2e-173 612.8 475 65.7
Hund02254 Selenicereus undatus HOM05D000718 ORTHO05D007431 3.2e-172 609.0 473 66.8
SGA_v2.0_scaffold130G34293 Striga asiatica HOM05D000718 ORTHO05D007431 5.4e-172 608.2 466 68.0
PSO782G3001 Papaver somniferum HOM05D000718 ORTHO05D007431 9.2e-172 607.4 476 66.0
Nn1g04439 Nelumbo nucifera HOM05D000718 ORTHO05D007431 2.7e-171 605.9 440 70.5
PSO478G1672 Papaver somniferum HOM05D000718 ORTHO05D007431 4.6e-171 605.1 476 65.8
Manes.03G101200 Manihot esculenta HOM05D000718 ORTHO05D007431 1.1e-169 600.5 417 71.0
CSS0021542 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 1.5e-169 600.1 454 68.3
MBI07_g09566_MAGBIO Magnolia biondii HOM05D000718 ORTHO05D007431 5.6e-169 598.2 529 60.5
HanXRQChr15g0476211 Helianthus annuus HOM05D000718 ORTHO05D007431 2.8e-168 595.9 469 64.4
C05p52240 Brassica napus HOM05D000718 ORTHO05D007431 4.7e-168 595.1 443 68.6
Nn1g09174 Nelumbo nucifera HOM05D000718 ORTHO05D007431 1.0e-167 594.0 474 65.0
ECA240G1747 Erigeron canadensis HOM05D000718 ORTHO05D007431 8.9e-167 590.9 472 62.7
Lsat_1_v5_gn_9_99900 Lactuca sativa HOM05D000718 ORTHO05D007431 1.1e-164 583.9 467 64.2
FAN21G3716 Fragaria x ananassa HOM05D000718 ORTHO05D007431 9.2e-164 580.9 413 70.9
vmacro11939 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 3.5e-163 578.9 472 63.1
CDE04G1093 Ceratophyllum demersum HOM05D000718 ORTHO05D007431 5.0e-162 575.1 468 63.9
AUR62019575 Chenopodium quinoa HOM05D000718 ORTHO05D007431 8.3e-157 557.8 425 66.8
VMungo1127G0879 Vigna mungo HOM05D000718 ORTHO05D007431 7.1e-156 554.7 426 67.6
CSS0043856 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 1.1e-153 547.4 474 62.2
ATR0602G196 Amborella trichopoda HOM05D000718 ORTHO05D007431 4.7e-152 542.0 472 60.4
Ciclev10021305m.g Citrus clementina HOM05D000718 ORTHO05D007431 2.2e-141 506.5 324 78.1
CSS0014195 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 2.9e-141 506.1 472 57.8
HPP92_023429 Vanilla planifolia HOM05D000718 ORTHO05D007431 3.8e-141 505.8 475 57.1
unitig_52.g17395 Utricularia gibba HOM05D000718 ORTHO05D007431 1.2e-139 500.7 476 56.9
Os09g0315800 Oryza sativa ssp. japonica HOM05D000718 ORTHO05D007431 4.8e-136 488.8 494 55.9
SEGI_16322 Sequoiadendron giganteum HOM05D000718 ORTHO05D007431 9.6e-129 464.5 469 52.2
MD11G1263600 Malus domestica HOM05D000718 ORTHO05D007431 1.3e-122 444.1 297 75.1
Zm00001eb309730 Zea mays HOM05D000718 ORTHO05D007431 2.1e-120 436.8 354 62.1
vmacro11937 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 4.6e-115 419.1 335 65.7
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 6.0e-115 418.7 429 55.0
Sc16g0007570 Simmondsia chinensis HOM05D000718 ORTHO05D007431 5.7e-113 412.1 314 67.8
vmacro23384 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 1.2e-99 367.9 363 57.0
CsaV3_4G033110 Cucumis sativus L. HOM05D000718 ORTHO05D007431 7.9e-99 365.2 315 59.7
SHI27609 Sapria himalayana HOM05D000718 ORTHO05D007431 5.7e-97 359.0 415 47.0
AagrBONN_evm.TU.Sc2ySwM_228.1801 Anthoceros agrestis HOM05D000718 ORTHO05D007431 1.1e-92 344.7 473 42.5
Thecc.07G114700 Theobroma cacao HOM05D000718 ORTHO05D007431 1.8e-87 327.4 402 49.3
SMO367G0522 Selaginella moellendorffii HOM05D000718 ORTHO05D007431 2.6e-86 323.6 475 42.1
BcaB06g29518 Brassica carinata HOM05D000718 ORTHO05D002712 5.9e-86 322.4 468 44.7
Pp3c4_25540 Physcomitrium patens HOM05D000718 ORTHO05D007431 2.1e-83 313.9 491 38.9
Mapoly0061s0004 Marchantia polymorpha HOM05D000718 ORTHO05D007431 5.7e-81 305.8 474 38.4
Psat4g090840 Pisum sativum HOM05D000718 ORTHO05D007431 4.8e-80 302.8 262 63.7
Sp3g13120 Schrenkiella parvula HOM05D000718 ORTHO05D007431 1.2e-78 298.1 225 64.4
vmacro11938 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 1.1e-76 291.6 318 51.6
Psat3g077000 Pisum sativum HOM05D000718 ORTHO05D007431 4.2e-68 263.1 257 54.9
MSTRG.14233 Avicennia marina HOM05D000718 ORTHO05D007431 1.6e-67 261.2 236 57.2
Sc16g0007580 Simmondsia chinensis HOM05D000718 ORTHO05D007431 1.4e-50 204.9 161 63.4
Thecc.07G115900 Theobroma cacao HOM05D000718 ORTHO05D007431 1.7e-48 198.0 170 60.0
Hund02252 Selenicereus undatus HOM05D000718 ORTHO05D007431 2.5e-44 184.1 162 66.0
PGSC0003DMG400011947 Solanum tuberosum HOM05D000718 ORTHO05D007431 2.4e-31 141.0 116 62.1
Cpa.g.sc77.7 Carica papaya HOM05D000718 ORTHO05D007431 3.2e-31 140.6 117 65.0
Thecc.07G115200 Theobroma cacao HOM05D000718 ORTHO05D007431 4.1e-31 140.2 123 57.7
MD11G1263700 Malus domestica HOM05D000718 ORTHO05D007431 7.1e-31 139.4 121 58.7
TAR627G0847 Trochodendron aralioides HOM05D000718 ORTHO05D007431 5.6e-28 129.8 124 57.3
Psat2g113040 Pisum sativum HOM05D000718 ORTHO05D004709 1.2e-27 128.6 92 73.9
CBR_g49411 Chara braunii HOM05D000019 ORTHO05D000353 5.1e-21 106.7 429 25.9
CAN.G713.20 Capsicum annuum HOM05D000718 ORTHO05D007431 1.9e-20 104.8 87 57.5
Thecc.07G114100 Theobroma cacao HOM05D000718 ORTHO05D007431 7.6e-17 92.8 52 88.5
Thecc.07G113800 Theobroma cacao HOM05D000718 ORTHO05D007431 2.9e-16 90.9 179 38.5
Thecc.07G114000 Theobroma cacao HOM05D000718 ORTHO05D007431 1.6e-11 75.1 105 43.8
Lsat_1_v5_gn_9_99920 Lactuca sativa HOM05D000718 ORTHO05D007431 2.9e-08 64.3 54 64.8


User provided reference genes

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