Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 2.3e-54 215.3 107 100.0
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 3.9e-38 161.4 107 79.4
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 9.0e-35 150.2 108 73.1
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 1.7e-30 136.0 99 71.7
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 6.6e-30 134.0 102 75.5
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 6.9e-27 124.0 110 62.7
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 4.5e-26 121.3 95 64.2
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 4.5e-26 121.3 103 65.0
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 1.7e-25 119.4 103 62.1
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.2e-25 119.0 105 65.7
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 2.2e-25 119.0 105 65.7
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 3.8e-25 118.2 98 64.3
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 3.8e-25 118.2 106 64.2
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 4.9e-25 117.9 86 75.6
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.9e-24 115.9 105 64.8
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 3.2e-24 115.2 115 59.1
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 4.2e-24 114.8 98 61.2
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 7.1e-24 114.0 107 61.7
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 9.3e-24 113.6 101 64.4
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.6e-23 112.8 95 70.5
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 2.1e-23 112.5 97 58.8
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 2.1e-23 112.5 97 58.8
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 7.9e-23 110.5 83 67.5
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 1.0e-22 110.2 105 58.1
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 1.8e-22 109.4 103 56.3
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 5.1e-22 107.8 107 60.7
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 5.1e-22 107.8 99 63.6
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 8.7e-22 107.1 96 64.6
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.1e-21 106.7 81 63.0
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.9e-21 105.9 95 68.4
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 3.3e-21 105.1 102 60.8
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 1.3e-20 103.2 96 60.4
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 3.7e-20 101.7 85 62.4
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 6.2e-20 100.9 98 52.0
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 4.0e-19 98.2 100 58.0
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 5.3e-19 97.8 95 54.7
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 6.9e-19 97.4 95 60.0
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 9.0e-19 97.1 94 55.3
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 1.2e-18 96.7 96 57.3
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 2.6e-18 95.5 100 55.0
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 4.5e-18 94.7 105 50.5
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 5.8e-18 94.4 89 50.6
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 7.6e-18 94.0 109 50.5
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 2.2e-17 92.4 81 58.0
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 2.9e-17 92.0 79 60.8
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 3.8e-17 91.7 95 54.7
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 4.9e-17 91.3 101 49.5
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 6.4e-17 90.9 88 52.3
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 8.4e-17 90.5 99 52.5
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 1.1e-16 90.1 102 50.0
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.4e-16 89.7 91 52.7
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 4.2e-16 88.2 95 50.5
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 7.1e-16 87.4 69 71.0
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 7.1e-16 87.4 100 50.0
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 9.3e-16 87.0 85 51.8
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 9.3e-16 87.0 99 50.5
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 9.3e-16 87.0 75 56.0
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.2e-15 86.7 87 55.2
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 2.1e-15 85.9 74 60.8
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.7e-15 85.5 53 73.6
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 2.7e-15 85.5 79 50.6
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 2.7e-15 85.5 94 50.0
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 2.7e-15 85.5 98 53.1
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 4.6e-15 84.7 93 46.2
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 4.6e-15 84.7 89 48.3
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 6.0e-15 84.3 90 54.4
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 7.9e-15 84.0 85 45.9
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 7.9e-15 84.0 85 45.9
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 7.9e-15 84.0 90 51.1
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 7.9e-15 84.0 69 58.0
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 7.9e-15 84.0 85 52.9
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 7.9e-15 84.0 77 51.9
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.0e-14 83.6 106 50.9
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 1.3e-14 83.2 89 47.2
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 1.3e-14 83.2 79 50.6
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 1.3e-14 83.2 85 54.1
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 1.8e-14 82.8 69 56.5
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 2.3e-14 82.4 61 60.7
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.3e-14 82.4 96 50.0
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 2.3e-14 82.4 95 47.4
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 3.0e-14 82.0 92 47.8
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 3.0e-14 82.0 96 50.0
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 3.0e-14 82.0 79 53.2
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 3.9e-14 81.6 89 47.2
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 3.9e-14 81.6 96 50.0
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 3.9e-14 81.6 95 50.5
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 5.1e-14 81.3 80 48.8
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 6.7e-14 80.9 98 52.0
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 8.7e-14 80.5 122 41.8
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 8.7e-14 80.5 110 46.4
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 8.7e-14 80.5 110 46.4
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 8.7e-14 80.5 92 46.7
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 1.5e-13 79.7 86 47.7
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 1.5e-13 79.7 96 49.0
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 1.5e-13 79.7 92 45.7
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 1.9e-13 79.3 94 46.8
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 2.5e-13 79.0 110 47.3
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 2.5e-13 79.0 89 50.6
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 2.5e-13 79.0 85 48.2
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 2.5e-13 79.0 92 43.5
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 3.3e-13 78.6 65 53.8
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 4.3e-13 78.2 94 45.7
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 4.3e-13 78.2 99 46.5
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 4.3e-13 78.2 85 48.2
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 4.3e-13 78.2 86 51.2
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 4.3e-13 78.2 77 49.4
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 5.6e-13 77.8 110 46.4
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 7.4e-13 77.4 102 50.0
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 7.4e-13 77.4 93 45.2
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 9.6e-13 77.0 88 53.4
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 9.6e-13 77.0 60 55.0
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 2.1e-12 75.9 81 51.9
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 2.1e-12 75.9 79 50.6
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.8e-12 75.5 89 47.2
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 2.8e-12 75.5 110 50.9
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 6.2e-12 74.3 69 59.4
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 6.2e-12 74.3 78 52.6
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 1.1e-11 73.6 103 48.5
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 1.8e-11 72.8 75 52.0
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 4.0e-11 71.6 110 48.2
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 5.3e-11 71.2 68 52.9
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 5.3e-11 71.2 88 51.1
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 9.0e-11 70.5 64 57.8
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 1.2e-10 70.1 104 47.1
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 1.5e-10 69.7 92 46.7
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 3.4e-10 68.6 73 50.7
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 4.5e-10 68.2 44 65.9
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 4.5e-10 68.2 40 72.5
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 4.5e-10 68.2 106 48.1
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 1.3e-09 66.6 76 44.7
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.7e-09 66.2 60 48.3
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 2.2e-09 65.9 83 42.2
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 2.9e-09 65.5 100 45.0
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 4.9e-09 64.7 103 44.7
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 6.5e-09 64.3 62 43.5
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 8.4e-09 63.9 72 45.8
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 8.4e-09 63.9 66 45.5
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 1.1e-08 63.5 69 46.4
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 1.9e-08 62.8 69 46.4
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 1.9e-08 62.8 69 46.4
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 3.2e-08 62.0 62 53.2
Eucgr.D00467 Eucalyptus grandis HOM05D005007 ORTHO05D006053 7.1e-08 60.8 73 46.6
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 9.3e-08 60.5 62 50.0
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 1.2e-07 60.1 64 51.6
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 2.1e-07 59.3 48 60.4
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 2.1e-07 59.3 88 37.5
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 2.1e-07 59.3 56 48.2
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 2.7e-07 58.9 103 37.9
Os02g0234700 Oryza sativa ssp. japonica HOM05D005007 ORTHO05D006053 2.3e-06 55.8 72 41.7


User provided reference genes

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