Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 2.1e-294 1015.0 540 100.0
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 3.7e-222 775.0 541 76.2
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 4.3e-202 708.4 546 71.8
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 3.3e-186 655.6 449 77.1
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 1.1e-176 624.0 556 64.7
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 7.2e-173 611.3 546 64.8
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 9.3e-173 610.9 541 64.7
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 1.0e-166 590.9 552 63.2
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 2.2e-166 589.7 548 61.5
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 4.7e-164 582.0 547 63.1
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 1.8e-160 570.1 582 58.6
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 2.4e-160 569.7 546 61.0
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 1.3e-158 563.9 595 57.3
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 2.5e-157 559.7 543 60.6
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 3.2e-157 559.3 563 57.2
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 7.2e-157 558.1 547 61.2
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.4e-155 553.9 547 58.0
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 1.4e-155 553.9 544 59.4
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 1.7e-153 547.0 543 61.1
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 2.8e-153 546.2 540 57.4
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 8.2e-153 544.7 551 57.2
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 1.8e-152 543.5 547 60.0
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.1e-152 542.7 547 57.6
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 4.1e-152 542.3 549 57.6
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 4.5e-151 538.9 543 60.2
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 5.0e-150 535.4 582 56.7
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 1.5e-149 533.9 548 57.3
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 1.9e-149 533.5 597 55.3
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 1.9e-149 533.5 556 58.8
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 5.5e-149 531.9 542 58.9
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 6.1e-148 528.5 580 56.4
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 6.7e-147 525.0 545 57.2
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 2.0e-146 523.5 552 58.2
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 9.7e-146 521.2 553 57.0
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.7e-145 519.2 541 56.6
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 2.7e-143 513.1 545 58.2
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 1.7e-142 510.4 571 54.8
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 2.5e-141 506.5 548 56.2
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 7.2e-141 505.0 542 56.5
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 7.2e-141 505.0 574 54.7
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 3.6e-140 502.7 553 56.8
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 4.7e-140 502.3 544 55.9
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 1.0e-139 501.1 506 60.5
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 1.0e-139 501.1 544 57.0
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 2.0e-138 496.9 560 55.5
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 2.2e-137 493.4 544 55.9
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 1.6e-135 487.3 561 54.2
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 3.5e-135 486.1 577 53.2
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 1.3e-134 484.2 485 59.2
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 1.9e-133 480.3 545 54.3
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 4.2e-133 479.2 544 55.0
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 7.2e-133 478.4 548 52.9
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 2.3e-131 473.4 546 54.4
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 2.2e-129 466.8 547 54.1
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 3.1e-128 463.0 545 53.2
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 5.4e-128 462.2 587 50.4
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 7.0e-128 461.8 558 54.1
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 2.3e-126 456.8 544 51.7
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 3.3e-125 453.0 541 53.2
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 7.3e-125 451.8 556 51.8
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 9.5e-125 451.4 544 51.3
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 1.2e-124 451.1 561 51.7
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 1.0e-123 448.0 560 52.5
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 1.0e-123 448.0 542 52.4
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 1.7e-121 440.7 565 49.9
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 6.4e-121 438.7 472 56.1
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 4.1e-120 436.0 566 49.8
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 2.7e-119 433.3 549 50.6
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.5e-119 433.0 449 57.2
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 1.7e-118 430.6 543 52.7
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 7.3e-117 425.2 549 51.5
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 1.6e-116 424.1 546 50.7
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 1.4e-115 421.0 552 50.7
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 4.0e-115 419.5 543 50.8
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 1.7e-113 414.1 549 51.5
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 1.9e-112 410.6 559 48.7
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 2.4e-112 410.2 541 49.0
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 9.2e-112 408.3 576 48.3
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 1.2e-111 407.9 543 47.9
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 6.0e-111 405.6 543 49.2
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 1.3e-110 404.4 542 48.2
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 3.9e-110 402.9 649 43.6
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 8.6e-110 401.7 343 64.4
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 8.1e-108 395.2 544 46.5
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 1.5e-106 391.0 543 47.7
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 4.4e-106 389.4 545 47.7
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 3.2e-104 383.3 547 48.8
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 6.0e-103 379.0 442 55.2
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 1.7e-102 377.5 543 46.2
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 6.6e-102 375.6 443 55.3
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 9.9e-98 361.7 590 44.6
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 6.4e-97 359.0 496 49.0
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 1.1e-96 358.2 577 43.7
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 2.4e-96 357.1 562 43.4
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 3.0e-94 350.1 328 60.7
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 6.6e-94 349.0 481 47.2
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 6.6e-94 349.0 545 44.6
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 6.6e-94 349.0 545 44.4
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 1.1e-93 348.2 545 44.6
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 3.3e-93 346.7 546 44.5
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 1.2e-92 344.7 377 57.0
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 8.1e-92 342.0 544 43.8
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 7.6e-90 335.5 535 43.4
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 1.6e-87 327.8 541 42.5
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.2e-79 301.6 305 55.1
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 3.9e-78 296.6 543 39.4
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 5.6e-77 292.7 564 41.1
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 1.3e-76 291.6 537 41.2
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 1.3e-76 291.6 537 41.2
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 4.0e-75 286.6 308 53.6
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 1.3e-70 271.6 544 39.7
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 3.8e-65 253.4 590 36.6
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 6.0e-63 246.1 400 44.5
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 4.5e-58 229.9 482 38.8
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 1.1e-56 225.3 334 43.1
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.3e-54 217.6 446 39.5
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 5.3e-43 179.9 570 30.0
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 1.5e-42 178.3 262 42.0
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 4.7e-39 166.8 251 45.8
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 1.0e-38 165.6 181 59.1
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 4.8e-36 156.8 536 30.0
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 6.3e-36 156.4 596 31.4
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 2.6e-29 134.4 229 39.7
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 3.7e-28 130.6 181 38.7
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 1.5e-24 118.6 136 55.9
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 1.6e-23 115.2 243 36.2
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 1.7e-20 105.1 199 38.2
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 2.8e-20 104.4 207 38.6
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.7e-20 104.0 98 56.1
unitig_746.g26692 Utricularia gibba HOM05D002418 ORTHO05D002572 4.5e-18 97.1 249 36.9
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 1.7e-17 95.1 146 41.1
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 3.6e-15 87.4 63 63.5
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 5.2e-14 83.6 97 48.5
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 5.2e-14 83.6 97 48.5
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 5.2e-14 83.6 97 48.5
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 5.2e-14 83.6 97 48.5
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 5.2e-14 83.6 97 48.5
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 5.2e-14 83.6 97 48.5
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 2.6e-13 81.3 134 32.1
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 1.3e-12 79.0 120 41.7
RcHm_v2.0_Chr2g0102431 Rosa chinensis HOM05D002452 ORTHO05D006766 4.5e-10 70.5 92 51.1
Hma1.2p1_0081F.1_g042300 Hydrangea macrophylla HOM05D002452 ORTHO05D006766 8.0e-07 59.7 47 63.8
MCO14G309 Micromonas commoda HOM05D002452 ORTHO05D006766 1.0e-06 59.3 153 26.8


User provided reference genes

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