Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p025249 Quercus lobata HOM05D007501 ORTHO05D009528 8.2e-108 393.7 189 100.0
Haze_08443 Corylus avellana HOM05D007501 ORTHO05D009528 1.2e-55 220.3 189 65.6
Cfa019508 Carpinus fangiana HOM05D007501 ORTHO05D009528 2.0e-53 213.0 195 61.0
Potri.011G103500 Populus trichocarpa HOM05D007501 ORTHO05D009528 1.6e-50 203.4 193 57.5
Gohir.A11G289800 Gossypium hirsutum HOM05D007501 ORTHO05D009528 8.6e-49 197.6 190 56.3
Gorai.007G332200 Gossypium raimondii HOM05D007501 ORTHO05D009528 3.3e-48 195.7 190 55.8
GSVIVG01014087001 Vitis vinifera HOM05D007501 ORTHO05D009528 4.3e-48 195.3 189 57.1
Manes.03G078700 Manihot esculenta HOM05D007501 ORTHO05D009528 9.5e-48 194.1 200 54.0
Gohir.D11G302600 Gossypium hirsutum HOM05D007501 ORTHO05D009528 1.2e-47 193.7 190 55.3
COL.COLO4_03607 Corchorus olitorius HOM05D007501 ORTHO05D009528 3.6e-47 192.2 193 56.5
Manes.15G099000 Manihot esculenta HOM05D007501 ORTHO05D009528 3.6e-47 192.2 196 57.1
Potri.001G382800 Populus trichocarpa HOM05D007501 ORTHO05D009528 8.1e-47 191.0 198 56.1
FAN21G3657 Fragaria x ananassa HOM05D007501 ORTHO05D009528 2.4e-46 189.5 197 55.3
Sabra11G0077300 Salix brachista HOM05D007501 ORTHO05D009528 2.6e-45 186.0 193 56.0
Duzib213G0875 Durio zibethinus HOM05D007501 ORTHO05D009528 5.8e-45 184.9 189 54.5
CSS0000849 Camellia sinensis var. sinensis HOM05D007501 ORTHO05D009528 9.9e-45 184.1 191 53.4
FAN25G1377 Fragaria x ananassa HOM05D007501 ORTHO05D009528 1.3e-44 183.7 197 53.8
Sabra11G0082200 Salix brachista HOM05D007501 ORTHO05D009528 1.3e-44 183.7 193 55.4
RcHm_v2.0_Chr5g0029351 Rosa chinensis HOM05D007501 ORTHO05D009528 1.1e-43 180.6 195 55.4
Oeu059251.1 Olea europaea HOM05D007501 ORTHO05D009528 3.2e-43 179.1 189 54.5
MD11G1270900 Malus domestica HOM05D007501 ORTHO05D009528 4.2e-43 178.7 191 55.5
FvH4_3g17620 Fragaria vesca HOM05D007501 ORTHO05D009528 7.1e-43 177.9 197 53.8
FAN11G3003 Fragaria x ananassa HOM05D007501 ORTHO05D009528 7.1e-43 177.9 197 53.8
MD03G1250700 Malus domestica HOM05D007501 ORTHO05D009528 9.2e-43 177.6 177 56.5
Actinidia03620 Actinidia chinensis HOM05D007501 ORTHO05D009528 1.2e-42 177.2 189 52.4
CiPaw.12G110200 Carya illinoinensis HOM05D007501 ORTHO05D009528 1.2e-42 177.2 196 54.6
Dinv13355 Davidia involucrata HOM05D007501 ORTHO05D009528 1.6e-42 176.8 189 55.6
Glyma.15G211700 Glycine max HOM05D007501 ORTHO05D009528 2.1e-42 176.4 209 48.8
Glyma.15G210500 Glycine max HOM05D007501 ORTHO05D009528 2.7e-42 176.0 211 49.3
Nn3g20958 Nelumbo nucifera HOM05D007501 ORTHO05D009528 7.8e-42 174.5 174 51.1
vmacro09418 Vaccinium macrocarpon HOM05D007501 ORTHO05D009528 2.3e-41 172.9 164 53.0
Cc05_g10640 Coffea canephora HOM05D007501 ORTHO05D009528 3.3e-40 169.1 194 51.0
Prupe.4G155600 Prunus persica HOM05D007501 ORTHO05D009528 5.6e-40 168.3 192 53.6
Eucgr.F01372 Eucalyptus grandis HOM05D007501 ORTHO05D009528 9.6e-40 167.5 182 53.3
VMungo1127G2061 Vigna mungo HOM05D007501 ORTHO05D009528 1.6e-39 166.8 218 46.3
Ciclev10024060m.g Citrus clementina HOM05D007501 ORTHO05D009528 2.1e-39 166.4 194 50.0
Phvul.011G168000 Phaseolus vulgaris HOM05D007501 ORTHO05D009528 2.8e-39 166.0 213 46.0
RhsimUnG0206300 Rhododendron simsii HOM05D007501 ORTHO05D009528 4.7e-39 165.2 178 49.4
Thecc.07G134800 Theobroma cacao HOM05D007501 ORTHO05D009528 8.1e-39 164.5 194 51.5
Lj3g0021891 Lotus japonicus HOM05D007501 ORTHO05D009528 1.4e-38 163.7 209 46.4
TWI39G1127 Tripterygium wilfordii HOM05D007501 ORTHO05D009528 4.0e-38 162.2 178 50.0
Aqoxy4G00171 Aquilegia oxysepala HOM05D007501 ORTHO05D009528 4.4e-37 158.7 188 48.4
arahy.Tifrunner.gnm1.ann1.5U50EQ Arachis hypogaea HOM05D007501 ORTHO05D009528 1.3e-36 157.1 190 43.7
Cpa.g.sc682.2 Carica papaya HOM05D007501 ORTHO05D009528 4.9e-36 155.2 174 51.1
HanXRQChr11g0331231 Helianthus annuus HOM05D007501 ORTHO05D009528 4.9e-36 155.2 193 49.7
PSO541G4098 Papaver somniferum HOM05D007501 ORTHO05D009528 1.9e-35 153.3 195 47.7
PSO675G1715 Papaver somniferum HOM05D007501 ORTHO05D009528 5.4e-35 151.8 195 47.7
Peaxi162Scf01338g00001 Petunia axillaris HOM05D007501 ORTHO05D009528 3.5e-34 149.1 189 44.4
Psat4g135600 Pisum sativum HOM05D007501 ORTHO05D009528 1.3e-33 147.1 220 43.2
PGR083G0065 Punica granatum HOM05D007501 ORTHO05D009528 8.7e-33 144.4 192 46.4
TPR.G16483 Trifolium pratense HOM05D007501 ORTHO05D009528 1.1e-32 144.1 228 41.7
DCAR_019618 Daucus carota HOM05D007501 ORTHO05D009528 4.3e-32 142.1 194 45.9
ECA236G0060 Erigeron canadensis HOM05D007501 ORTHO05D009528 7.3e-32 141.4 193 45.6
CARHR089710 Cardamine hirsuta HOM05D007501 ORTHO05D009528 2.1e-31 139.8 190 44.7
Thhalv10021658m.g Eutrema salsugineum HOM05D007501 ORTHO05D009528 2.1e-31 139.8 190 45.3
arahy.Tifrunner.gnm1.ann1.652QPS Arachis hypogaea HOM05D007501 ORTHO05D009528 6.2e-31 138.3 180 43.3
PGSC0003DMG400021255 Solanum tuberosum HOM05D007501 ORTHO05D009528 6.9e-30 134.8 190 42.1
SGA_v2.0_scaffold73G24380 Striga asiatica HOM05D007501 ORTHO05D009528 6.9e-30 134.8 193 43.0
C01p49690 Brassica napus HOM05D007501 ORTHO05D009528 9.0e-30 134.4 190 44.7
A01p39060 Brassica napus HOM05D007501 ORTHO05D009528 1.2e-29 134.0 190 44.2
BolC1t04925H Brassica oleracea HOM05D007501 ORTHO05D009528 1.2e-29 134.0 190 44.7
Medtr8g042500 Medicago truncatula HOM05D007501 ORTHO05D009528 1.2e-29 134.0 224 40.6
AT3G14760 Arabidopsis thaliana HOM05D007501 ORTHO05D009528 2.0e-29 133.3 190 44.2
Carub.0003s1443 Capsella rubella HOM05D007501 ORTHO05D009528 2.0e-29 133.3 190 44.2
Sp3g12990 Schrenkiella parvula HOM05D007501 ORTHO05D009528 2.0e-29 133.3 194 42.3
AL3G27070 Arabidopsis lyrata HOM05D007501 ORTHO05D009528 2.6e-29 132.9 190 43.7
BraA01t03953Z Brassica rapa HOM05D007501 ORTHO05D009528 2.6e-29 132.9 190 44.2
Solyc10g007490.2 Solanum lycopersicum HOM05D007501 ORTHO05D009528 2.9e-28 129.4 187 41.2
CANSAT56G4361 Cannabis sativa HOM05D007501 ORTHO05D009528 4.9e-28 128.6 208 43.8
Sopen10g003430 Solanum pennellii HOM05D007501 ORTHO05D009528 6.4e-28 128.3 187 40.6
THA.LOC104822580 Tarenaya hassleriana HOM05D007501 ORTHO05D009528 2.1e-26 123.2 191 44.5
Aa31LG8G1980 Aethionema arabicum HOM05D007501 ORTHO05D009528 3.5e-26 122.5 190 39.5
PGSC0003DMG400043590 Solanum tuberosum HOM05D007501 ORTHO05D009528 3.9e-25 119.0 167 40.1
AUR62013946 Chenopodium quinoa HOM05D007501 ORTHO05D009528 1.5e-24 117.1 162 42.6
SalBow8G3616 Salvia bowleyana HOM05D007501 ORTHO05D009528 3.3e-24 115.9 178 39.3
Sopen07g030380 Solanum pennellii HOM05D007501 ORTHO05D009528 3.3e-24 115.9 170 41.2
CAN.G375.54 Capsicum annuum HOM05D007501 ORTHO05D009528 1.3e-23 114.0 165 39.4
Migut.M00689 Erythranthe guttata HOM05D007501 ORTHO05D009528 1.3e-23 114.0 164 43.9
BcaC09g48445 Brassica carinata HOM05D007501 ORTHO05D009528 3.7e-23 112.5 179 41.3
Dinv26703 Davidia involucrata HOM05D007501 ORTHO05D009528 3.7e-23 112.5 133 47.4
Lalb_Chr03g0031351 Lupinus albus HOM05D007501 ORTHO05D009528 4.8e-23 112.1 162 43.2
Nitab4.5_0008460g0030 Nicotiana tabacum HOM05D007501 ORTHO05D009528 4.8e-23 112.1 164 42.1
Peaxi162Scf00111g00124 Petunia axillaris HOM05D007501 ORTHO05D009528 6.2e-23 111.7 162 42.0
CsaV3_4G032800 Cucumis sativus L. HOM05D007501 ORTHO05D009528 1.8e-22 110.2 192 40.6
Nitab4.5_0001140g0140 Nicotiana tabacum HOM05D007501 ORTHO05D009528 2.4e-22 109.8 165 40.6
MELO3C027342.2 Cucumis melo HOM05D007501 ORTHO05D009528 3.4e-21 105.9 172 38.4
ClCG11G017140 Citrullus lanatus HOM05D007501 ORTHO05D009528 9.9e-21 104.4 183 40.4
Nitab4.5_0000383g0020 Nicotiana tabacum HOM05D007501 ORTHO05D009528 1.7e-20 103.6 147 43.5
AUR62019665 Chenopodium quinoa HOM05D007501 ORTHO05D009528 4.9e-20 102.1 162 38.9
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 4.6e-18 95.5 180 34.4
Sed0021060 Sechium edule HOM05D007501 ORTHO05D009528 2.4e-14 83.2 189 33.3
ATR0681G022 Amborella trichopoda HOM05D007501 ORTHO05D009528 4.0e-14 82.4 169 40.2
Peaxi162Scf00069g01713 Petunia axillaris HOM05D007501 ORTHO05D009528 3.4e-13 79.3 89 50.6
EL10Ac4g08429 Beta vulgaris HOM05D007501 ORTHO05D009528 2.5e-11 73.2 149 33.6
Zm00001eb055040 Zea mays HOM05D007501 ORTHO05D009528 2.5e-08 63.2 69 50.7
SEGI_41065 Sequoiadendron giganteum HOM05D007501 ORTHO05D009528 3.3e-08 62.8 146 32.9
Zm00001eb314570 Zea mays HOM05D007501 ORTHO05D009528 1.8e-06 57.0 62 48.4
EL10Ac1g01623 Beta vulgaris HOM05D007964 ORTHO05D010090 3.1e-06 56.2 77 36.4
Os02g0320600 Oryza sativa ssp. japonica HOM05D007501 ORTHO05D009528 3.1e-06 56.2 31 74.2
Os02g0321600 Oryza sativa ssp. japonica HOM05D007501 ORTHO05D009528 5.3e-06 55.5 29 72.4
Gohir.A06G112000 Gossypium hirsutum HOM05D007964 ORTHO05D010090 6.9e-06 55.1 36 58.3
ATR0053G026 Amborella trichopoda HOM05D002803 ORTHO05D003089 9.0e-06 54.7 63 44.4
Gohir.D06G116200 Gossypium hirsutum HOM05D007964 ORTHO05D010090 9.0e-06 54.7 36 55.6


User provided reference genes

Program Settings