Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 3.0e-171 605.1 321 100.0
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 4.8e-132 474.9 313 82.4
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 3.1e-131 472.2 296 82.8
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 1.3e-118 430.3 312 70.5
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 3.9e-118 428.7 317 68.5
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 5.1e-118 428.3 312 70.5
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 2.8e-116 422.5 331 67.4
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 1.1e-115 420.6 320 68.4
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 3.1e-115 419.1 308 68.5
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 5.3e-115 418.3 308 68.8
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 4.5e-114 415.2 315 66.7
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 5.8e-114 414.8 308 67.9
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 7.6e-114 414.5 311 67.2
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 1.0e-113 414.1 312 67.0
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 3.8e-113 412.1 309 69.6
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 4.9e-113 411.8 314 67.5
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 6.5e-113 411.4 312 66.7
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 6.5e-113 411.4 315 67.3
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 1.4e-112 410.2 312 65.7
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 1.9e-112 409.8 311 66.2
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 4.2e-112 408.7 307 67.4
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 7.1e-112 407.9 312 65.4
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 1.6e-111 406.8 312 65.1
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 2.7e-111 406.0 309 66.7
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 2.7e-111 406.0 311 63.7
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 2.7e-111 406.0 307 67.1
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 6.0e-111 404.8 323 64.1
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 6.0e-111 404.8 308 65.6
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 1.8e-110 403.3 311 69.5
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 1.8e-110 403.3 361 59.6
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 3.9e-110 402.1 311 65.0
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 5.1e-110 401.7 313 64.5
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 6.7e-110 401.4 310 64.8
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 6.7e-110 401.4 313 62.9
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 1.9e-109 399.8 319 65.8
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 9.7e-109 397.5 312 64.1
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 6.3e-108 394.8 304 66.4
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 1.4e-107 393.7 304 66.4
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 4.1e-107 392.1 334 61.4
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 6.9e-107 391.3 306 66.0
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 6.9e-107 391.3 307 64.2
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 9.0e-107 391.0 309 65.0
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 9.0e-107 391.0 310 63.5
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 7.7e-106 387.9 309 65.0
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 1.0e-105 387.5 307 63.2
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 1.0e-105 387.5 307 63.2
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 1.0e-105 387.5 304 65.5
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.3e-105 387.1 324 63.0
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 2.1e-103 379.8 309 63.1
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 2.7e-103 379.4 317 61.5
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 4.6e-103 378.6 311 61.1
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 6.1e-103 378.3 314 61.1
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 7.9e-103 377.9 321 59.5
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 7.9e-103 377.9 268 70.5
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 2.3e-102 376.3 314 61.5
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 8.8e-102 374.4 311 59.5
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 1.7e-100 370.2 314 60.8
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 2.8e-100 369.4 307 61.6
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 1.1e-99 367.5 302 60.9
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 1.4e-99 367.1 246 81.3
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 1.4e-99 367.1 275 65.1
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 4.1e-99 365.5 308 67.2
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 5.3e-99 365.2 314 59.2
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 6.9e-99 364.8 311 59.2
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 1.5e-98 363.6 317 59.6
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 1.0e-97 360.9 314 58.6
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 1.7e-97 360.1 316 57.9
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 1.7e-97 360.1 281 61.2
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 2.2e-97 359.8 281 63.0
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 2.9e-97 359.4 303 59.7
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 6.5e-97 358.2 306 61.4
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 8.5e-97 357.8 283 62.5
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 1.4e-96 357.1 314 58.6
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 1.9e-96 356.7 316 63.6
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 2.5e-96 356.3 279 71.0
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 4.2e-96 355.5 308 65.6
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 1.2e-95 354.0 319 63.3
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 2.1e-95 353.2 317 65.3
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 2.7e-95 352.8 280 61.4
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 3.6e-95 352.4 275 66.9
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 3.6e-95 352.4 282 61.7
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 1.0e-94 350.9 317 63.7
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 6.7e-94 348.2 317 64.0
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 1.1e-93 347.4 315 57.1
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 1.5e-93 347.1 314 63.7
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 1.5e-93 347.1 317 65.0
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 1.5e-93 347.1 306 64.7
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 3.3e-93 345.9 317 64.7
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 3.3e-93 345.9 317 64.0
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 3.3e-93 345.9 317 64.7
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 4.4e-93 345.5 317 64.7
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 9.7e-93 344.4 317 64.4
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 1.7e-92 343.6 317 63.4
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 6.3e-92 341.7 317 63.1
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 6.3e-92 341.7 327 54.1
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 8.2e-92 341.3 317 63.1
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 3.1e-91 339.3 312 58.7
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 3.1e-91 339.3 289 66.8
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 2.0e-90 336.7 318 61.3
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 2.6e-90 336.3 333 53.2
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 1.3e-89 334.0 277 61.0
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 2.2e-89 333.2 307 55.7
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 6.5e-89 331.6 281 59.1
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 2.1e-87 326.6 323 51.7
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 4.7e-87 325.5 315 52.7
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 4.7e-87 325.5 326 52.8
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 4.4e-85 318.9 311 53.4
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 6.3e-84 315.1 240 67.5
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 5.3e-83 312.0 268 62.3
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 9.1e-83 311.2 260 63.5
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 3.5e-82 309.3 310 53.9
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 2.9e-81 306.2 249 61.0
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 5.0e-81 305.4 233 66.1
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 1.2e-77 294.3 307 53.7
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 5.7e-77 292.0 279 55.2
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 7.2e-72 275.0 262 55.7
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 6.1e-71 271.9 266 54.5
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 1.7e-68 263.8 279 47.7
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 4.2e-64 249.2 276 46.7
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 1.8e-62 243.8 287 43.2
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 3.4e-61 239.6 316 42.7
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 5.8e-53 212.2 199 53.3
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.1e-47 193.7 191 54.5
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 8.9e-46 188.3 194 57.2
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 5.1e-41 172.6 169 53.3
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 4.3e-40 169.5 137 63.5
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 1.4e-38 164.5 110 74.5
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 5.8e-37 159.1 109 67.0
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 1.2e-34 151.4 282 36.9
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 2.1e-26 124.0 110 55.5


User provided reference genes

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