Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p024005 Quercus lobata HOM05D006014 ORTHO05D007608 2.8e-89 332.0 182 100.0
Gohir.D05G347800 Gossypium hirsutum HOM05D006014 ORTHO05D007608 3.4e-58 228.8 180 73.9
Gorai.009G375600 Gossypium raimondii HOM05D006014 ORTHO05D007608 3.4e-58 228.8 180 73.9
Gohir.A04G035600 Gossypium hirsutum HOM05D006014 ORTHO05D007608 9.8e-58 227.3 180 73.9
CiPaw.11G167800 Carya illinoinensis HOM05D006014 ORTHO05D007608 1.3e-57 226.9 175 75.4
Ciclev10009636m.g Citrus clementina HOM05D006014 ORTHO05D007608 1.7e-57 226.5 173 76.3
TAR626G1430 Trochodendron aralioides HOM05D006014 ORTHO05D007608 1.7e-57 226.5 172 77.9
ClCG11G017820 Citrullus lanatus HOM05D006014 ORTHO05D007608 4.9e-57 224.9 180 73.3
Manes.15G089600 Manihot esculenta HOM05D006014 ORTHO05D007608 6.4e-57 224.6 181 72.4
MELO3C025609.2 Cucumis melo HOM05D006014 ORTHO05D007608 8.3e-57 224.2 180 73.3
FvH4_3g19430 Fragaria vesca HOM05D006014 ORTHO05D007608 8.3e-57 224.2 175 74.9
FAN11G2300 Fragaria x ananassa HOM05D006014 ORTHO05D007608 8.3e-57 224.2 175 74.9
Potri.001G396600 Populus trichocarpa HOM05D006014 ORTHO05D007608 8.3e-57 224.2 177 72.3
RcHm_v2.0_Chr5g0032711 Rosa chinensis HOM05D006014 ORTHO05D007608 8.3e-57 224.2 174 75.3
Sabra16G0259700 Salix brachista HOM05D006014 ORTHO05D007608 8.3e-57 224.2 177 72.3
FAN21G0470 Fragaria x ananassa HOM05D006014 ORTHO05D007608 1.4e-56 223.4 175 74.9
Sed0004006 Sechium edule HOM05D006014 ORTHO05D007608 1.8e-56 223.0 181 72.4
GSVIVG01014290001 Vitis vinifera HOM05D006014 ORTHO05D007608 2.4e-56 222.6 173 74.0
Thecc.07G096300 Theobroma cacao HOM05D006014 ORTHO05D007608 3.2e-56 222.2 186 71.0
FAN25G0078 Fragaria x ananassa HOM05D006014 ORTHO05D007608 4.1e-56 221.9 175 73.7
CSS0037767 Camellia sinensis var. sinensis HOM05D006014 ORTHO05D007608 9.2e-56 220.7 180 69.4
CsaV3_4G033460 Cucumis sativus L. HOM05D006014 ORTHO05D007608 9.2e-56 220.7 180 72.2
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 1.6e-55 219.9 144 83.3
Hma1.2p1_1411F.1_g281760 Hydrangea macrophylla HOM05D006014 ORTHO05D007608 1.6e-55 219.9 177 72.9
Nn1g04203 Nelumbo nucifera HOM05D006014 ORTHO05D007608 3.5e-55 218.8 173 72.8
Nitab4.5_0003033g0060 Nicotiana tabacum HOM05D006014 ORTHO05D007608 5.9e-55 218.0 175 71.4
TAR624G0768 Trochodendron aralioides HOM05D006014 ORTHO05D007608 1.0e-54 217.2 182 74.7
Dinv14938 Davidia involucrata HOM05D006014 ORTHO05D007608 2.3e-54 216.1 182 70.3
Duzib170G0605 Durio zibethinus HOM05D006014 ORTHO05D007608 3.9e-54 215.3 188 70.2
Prupe.4G176000 Prunus persica HOM05D006014 ORTHO05D007608 3.9e-54 215.3 180 69.4
Migut.H01957 Erythranthe guttata HOM05D006014 ORTHO05D007608 2.5e-53 212.6 176 68.2
Solyc07g062870.3 Solanum lycopersicum HOM05D006014 ORTHO05D007608 3.3e-53 212.2 175 69.7
Sopen07g031070 Solanum pennellii HOM05D006014 ORTHO05D007608 3.3e-53 212.2 175 69.7
TWI38G2086 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 3.3e-53 212.2 178 69.7
MD03G1232600 Malus domestica HOM05D006014 ORTHO05D007608 1.2e-52 210.3 180 67.8
MD11G1253300 Malus domestica HOM05D006014 ORTHO05D007608 1.2e-52 210.3 170 71.8
Nitab4.5_0013317g0010 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.2e-52 210.3 172 70.9
PGR083G0398 Punica granatum HOM05D006014 ORTHO05D007608 1.2e-52 210.3 183 69.9
Glyma.12G162300 Glycine max HOM05D006014 ORTHO05D007608 2.1e-52 209.5 176 70.5
COL.COLO4_03477 Corchorus olitorius HOM05D006014 ORTHO05D007608 4.7e-52 208.4 186 68.3
Glyma.06G236200 Glycine max HOM05D006014 ORTHO05D007608 1.8e-51 206.5 176 73.3
Peaxi162Scf00069g01737 Petunia axillaris HOM05D006014 ORTHO05D007608 1.8e-51 206.5 175 69.1
CANSAT35G1465 Cannabis sativa HOM05D006014 ORTHO05D007608 2.3e-51 206.1 176 69.9
DCAR_019570 Daucus carota HOM05D006014 ORTHO05D007608 2.3e-51 206.1 181 66.3
PGSC0003DMG400012405 Solanum tuberosum HOM05D006014 ORTHO05D007608 3.1e-51 205.7 176 68.2
TPR.G28172 Trifolium pratense HOM05D006014 ORTHO05D007608 8.9e-51 204.1 181 66.9
Lj3g0022855 Lotus japonicus HOM05D006014 ORTHO05D007608 4.4e-50 201.8 177 66.7
Eucgr.F01167 Eucalyptus grandis HOM05D006014 ORTHO05D007608 5.8e-50 201.4 181 66.9
Lalb_Chr07g0182891 Lupinus albus HOM05D006014 ORTHO05D007608 5.8e-50 201.4 184 64.1
CARHR090180 Cardamine hirsuta HOM05D006014 ORTHO05D007608 9.8e-50 200.7 184 66.8
Phvul.011G162800 Phaseolus vulgaris HOM05D006014 ORTHO05D007608 9.8e-50 200.7 176 69.3
Psat4g136440 Pisum sativum HOM05D006014 ORTHO05D007608 1.3e-49 200.3 181 65.2
VMungo1127G0848 Vigna mungo HOM05D006014 ORTHO05D007608 2.9e-49 199.1 182 68.1
A03p39200 Brassica napus HOM05D006014 ORTHO05D007608 3.7e-49 198.7 186 65.6
Ca_23028_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 4.9e-49 198.4 175 69.1
Ca_23030_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 4.9e-49 198.4 175 69.1
BraA03t13069Z Brassica rapa HOM05D006014 ORTHO05D007608 8.3e-49 197.6 186 65.1
BolC1t04895H Brassica oleracea HOM05D006014 ORTHO05D007608 1.1e-48 197.2 181 66.3
THA.LOC104815561 Tarenaya hassleriana HOM05D006014 ORTHO05D007608 1.1e-48 197.2 184 65.8
arahy.Tifrunner.gnm1.ann1.FY4UJ9 Arachis hypogaea HOM05D006014 ORTHO05D007608 1.4e-48 196.8 219 57.5
Cc05_g11740 Coffea canephora HOM05D006014 ORTHO05D007608 1.4e-48 196.8 170 66.5
Oeu051088.1 Olea europaea HOM05D006014 ORTHO05D007608 1.9e-48 196.4 168 67.3
CDE10G0058 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 2.4e-48 196.1 173 65.9
AUR62036161 Chenopodium quinoa HOM05D006014 ORTHO05D007608 4.1e-48 195.3 182 65.4
Medtr8g061350 Medicago truncatula HOM05D006014 ORTHO05D007608 4.1e-48 195.3 175 65.7
PSO675G1148 Papaver somniferum HOM05D006014 ORTHO05D007608 5.4e-48 194.9 189 65.1
C01p49380 Brassica napus HOM05D006014 ORTHO05D007608 7.0e-48 194.5 181 65.7
CDE10G1292 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 7.0e-48 194.5 176 65.9
Sc03g0010200 Simmondsia chinensis HOM05D006014 ORTHO05D007608 7.0e-48 194.5 182 67.0
Lsat_1_v5_gn_5_128220 Lactuca sativa HOM05D006014 ORTHO05D007608 9.2e-48 194.1 180 65.6
A01p38830 Brassica napus HOM05D006014 ORTHO05D007608 1.2e-47 193.7 179 65.9
BraA01t03929Z Brassica rapa HOM05D006014 ORTHO05D007608 1.2e-47 193.7 179 65.9
MSTRG.12894 Avicennia marina HOM05D006014 ORTHO05D007608 1.6e-47 193.4 172 66.9
A05p34280 Brassica napus HOM05D006014 ORTHO05D007608 2.0e-47 193.0 195 63.6
BraA05t22249Z Brassica rapa HOM05D006014 ORTHO05D007608 2.0e-47 193.0 195 63.6
PSO541G1420 Papaver somniferum HOM05D006014 ORTHO05D007608 2.0e-47 193.0 189 64.6
SalBow8G3070 Salvia bowleyana HOM05D006014 ORTHO05D007608 2.0e-47 193.0 179 64.8
EL10Ac4g08237 Beta vulgaris HOM05D006014 ORTHO05D007608 4.6e-47 191.8 183 63.9
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 4.6e-47 191.8 126 82.5
BcaB04g20944 Brassica carinata HOM05D006014 ORTHO05D007608 6.0e-47 191.4 173 67.1
Sp3g13400 Schrenkiella parvula HOM05D006014 ORTHO05D007608 6.0e-47 191.4 192 63.0
Aqoxy1G02326 Aquilegia oxysepala HOM05D006014 ORTHO05D007608 1.0e-46 190.7 179 63.7
MBI07_g30170_MAGBIO Magnolia biondii HOM05D006014 ORTHO05D007608 1.0e-46 190.7 141 74.5
AUR62019472 Chenopodium quinoa HOM05D006014 ORTHO05D007608 2.3e-46 189.5 182 64.3
Ah.06g184580 Amaranthus hybridus HOM05D006014 ORTHO05D007608 5.0e-46 188.3 178 64.6
AL3G27580 Arabidopsis lyrata HOM05D006014 ORTHO05D007608 5.0e-46 188.3 185 63.8
AT3G15190 Arabidopsis thaliana HOM05D006014 ORTHO05D007608 5.0e-46 188.3 188 64.9
BcaB06g29543 Brassica carinata HOM05D006014 ORTHO05D007608 1.9e-45 186.4 195 62.1
C05p52040 Brassica napus HOM05D006014 ORTHO05D007608 4.3e-45 185.3 196 61.2
Thhalv10021521m.g Eutrema salsugineum HOM05D006014 ORTHO05D007608 4.3e-45 185.3 195 61.5
Aa31LG8G2390 Aethionema arabicum HOM05D006014 ORTHO05D007608 9.5e-45 184.1 190 60.0
Nitab4.5_0002330g0100 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.2e-44 183.7 192 60.4
Carub.0003s1484 Capsella rubella HOM05D006014 ORTHO05D007608 1.6e-44 183.3 184 63.6
Nitab4.5_0000332g0180 Nicotiana tabacum HOM05D006014 ORTHO05D007608 2.1e-44 183.0 176 63.6
HanXRQChr10g0302621 Helianthus annuus HOM05D006014 ORTHO05D007608 3.6e-44 182.2 181 61.9
ECA234G0345 Erigeron canadensis HOM05D006014 ORTHO05D007608 6.2e-44 181.4 184 59.8
BcaC01g03887 Brassica carinata HOM05D006014 ORTHO05D007608 1.8e-43 179.9 129 76.0
C03p47570 Brassica napus HOM05D006014 ORTHO05D007608 1.8e-43 179.9 130 75.4
BolC3t17032H Brassica oleracea HOM05D006014 ORTHO05D007608 2.3e-43 179.5 129 76.0
Rhsim04G0022600 Rhododendron simsii HOM05D006014 ORTHO05D007608 2.3e-43 179.5 179 60.9
Sed0026173 Sechium edule HOM05D006014 ORTHO05D007608 2.6e-42 176.0 181 60.8
arahy.Tifrunner.gnm1.ann1.QT5AN8 Arachis hypogaea HOM05D006014 ORTHO05D007608 7.5e-42 174.5 269 46.1
Oeu037371.1 Olea europaea HOM05D006014 ORTHO05D007608 7.5e-42 174.5 161 63.4
Hund04492 Selenicereus undatus HOM05D006014 ORTHO05D007608 7.5e-42 174.5 179 62.6
Actinidia35240 Actinidia chinensis HOM05D006014 ORTHO05D007608 3.7e-41 172.2 119 80.7
ATR0737G141 Amborella trichopoda HOM05D006014 ORTHO05D007608 4.1e-40 168.7 112 81.2
TWI39G1175 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 1.3e-38 163.7 129 69.8
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 1.7e-38 163.3 174 62.6
SEGI_01083 Sequoiadendron giganteum HOM05D006014 ORTHO05D007608 1.4e-35 153.7 173 59.5
Lj3g0017472 Lotus japonicus HOM05D006014 ORTHO05D007608 1.1e-32 144.1 118 69.5
Mapoly0009s0159 Marchantia polymorpha HOM05D006014 ORTHO05D007608 6.6e-30 134.8 186 51.1
Lj8A154T77 Lonicera japonica HOM05D006014 ORTHO05D007608 9.6e-29 131.0 176 50.0
Pp3c20_13390 Physcomitrium patens HOM05D006014 ORTHO05D007608 1.4e-27 127.1 121 60.3
Pp3c24_17080 Physcomitrium patens HOM05D006014 ORTHO05D007608 1.4e-27 127.1 117 60.7
SGA_v2.0_scaffold70G23686 Striga asiatica HOM05D006014 ORTHO05D007608 1.8e-27 126.7 343 34.4
Zm00001eb360330 Zea mays HOM05D006014 ORTHO05D007608 2.4e-27 126.3 112 61.6
BcaC09g48477 Brassica carinata HOM05D006014 ORTHO05D007608 4.0e-27 125.6 139 60.4
Os01g0678600 Oryza sativa ssp. japonica HOM05D006014 ORTHO05D007608 5.8e-26 121.7 190 43.7
AagrBONN_evm.TU.Sc2ySwM_344.3794 Anthoceros agrestis HOM05D006014 ORTHO05D007608 2.1e-23 113.2 181 44.2
CBR_g30802 Chara braunii HOM05D006014 ORTHO05D007608 2.1e-23 113.2 182 43.4
vmacro09523 Vaccinium macrocarpon HOM05D006014 ORTHO05D007608 1.5e-21 107.1 74 68.9
Cpa.g.sc131.85 Carica papaya HOM05D006014 ORTHO05D007608 1.3e-17 94.0 99 63.6
CBR_g39307 Chara braunii HOM05D006014 ORTHO05D007608 2.9e-17 92.8 83 57.8
Dinv20203 Davidia involucrata HOM05D006014 ORTHO05D007608 6.4e-17 91.7 107 59.8
Gohir.A13G146850 Gossypium hirsutum HOM05D006014 ORTHO05D007608 1.2e-15 87.4 69 71.0
Cre12.g494750 Chlamydomonas reinhardtii HOM05D006014 ORTHO05D007608 1.6e-15 87.0 108 51.9
MCO10G118 Micromonas commoda HOM05D006014 ORTHO05D007608 1.4e-11 73.9 91 48.4
Atru.chr2.2408 Acer truncatum HOM05D006014 ORTHO05D007608 3.4e-10 69.3 54 75.9
QL11p029078 Quercus lobata HOM05D006014 ORTHO05D013998 2.2e-09 66.6 63 63.5
HPP92_010061 Vanilla planifolia HOM05D006014 ORTHO05D007608 9.3e-08 61.2 109 46.8


User provided reference genes

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