Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p023949 Quercus lobata HOM05D005607 ORTHO05D008142 3.6e-58 228.0 114 100.0
Cfa020607 Carpinus fangiana HOM05D005607 ORTHO05D008142 1.5e-43 179.5 103 85.4
CiPaw.11G167700 Carya illinoinensis HOM05D005607 ORTHO05D008142 2.5e-43 178.7 106 81.1
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 1.2e-42 176.4 103 83.5
Gohir.A04G035700 Gossypium hirsutum HOM05D005607 ORTHO05D008142 4.7e-42 174.5 103 80.6
Duzib213G0871 Durio zibethinus HOM05D005607 ORTHO05D008142 1.8e-41 172.6 103 80.6
Gohir.D05G347700 Gossypium hirsutum HOM05D005607 ORTHO05D008142 1.8e-41 172.6 103 79.6
Gorai.009G375500 Gossypium raimondii HOM05D005607 ORTHO05D008142 2.3e-41 172.2 103 78.6
CANSAT35G0745 Cannabis sativa HOM05D005607 ORTHO05D008142 3.1e-41 171.8 104 77.9
Manes.03G105800 Manihot esculenta HOM05D005607 ORTHO05D008142 1.5e-40 169.5 106 74.5
COL.COLO4_36717 Corchorus olitorius HOM05D005607 ORTHO05D008142 2.0e-40 169.1 103 78.6
Thecc.07G096400 Theobroma cacao HOM05D005607 ORTHO05D008142 2.0e-40 169.1 103 77.7
CSS0003695 Camellia sinensis var. sinensis HOM05D005607 ORTHO05D008142 5.8e-40 167.5 106 78.3
CSS0008326 Camellia sinensis var. sinensis HOM05D005607 ORTHO05D008142 5.8e-40 167.5 106 78.3
MD11G1253400 Malus domestica HOM05D005607 ORTHO05D008142 9.8e-40 166.8 104 78.8
Duzib170G0139 Durio zibethinus HOM05D005607 ORTHO05D008142 1.3e-39 166.4 112 71.4
Prupe.4G175900 Prunus persica HOM05D005607 ORTHO05D008142 1.7e-39 166.0 101 79.2
Aqoxy4G00691 Aquilegia oxysepala HOM05D005607 ORTHO05D008142 2.9e-39 165.2 104 76.0
RcHm_v2.0_Chr5g0032701 Rosa chinensis HOM05D005607 ORTHO05D008142 2.9e-39 165.2 103 78.6
MD03G1232700 Malus domestica HOM05D005607 ORTHO05D008142 1.4e-38 162.9 104 76.9
ClCG11G017810 Citrullus lanatus HOM05D005607 ORTHO05D008142 1.9e-38 162.5 101 76.2
Atru.chr2.2407 Acer truncatum HOM05D005607 ORTHO05D008142 2.4e-38 162.2 103 75.7
Eucgr.F01141 Eucalyptus grandis HOM05D005607 ORTHO05D008142 4.1e-38 161.4 106 73.6
GSVIVG01014288001 Vitis vinifera HOM05D005607 ORTHO05D008142 4.1e-38 161.4 104 76.0
Potri.001G396500 Populus trichocarpa HOM05D005607 ORTHO05D008142 7.1e-38 160.6 104 75.0
arahy.Tifrunner.gnm1.ann1.K8QLTQ Arachis hypogaea HOM05D005607 ORTHO05D008142 9.2e-38 160.2 106 72.6
Eucgr.F01169 Eucalyptus grandis HOM05D005607 ORTHO05D008142 1.6e-37 159.5 106 72.6
FAN16G0865 Fragaria x ananassa HOM05D005607 ORTHO05D008142 1.6e-37 159.5 116 70.7
Nn1g04204 Nelumbo nucifera HOM05D005607 ORTHO05D008142 1.6e-37 159.5 101 77.2
Dinv20204 Davidia involucrata HOM05D005607 ORTHO05D008142 2.1e-37 159.1 106 75.5
CsaV3_4G033450 Cucumis sativus L. HOM05D005607 ORTHO05D008142 2.7e-37 158.7 101 75.2
FvH4_3g19420 Fragaria vesca HOM05D005607 ORTHO05D008142 4.6e-37 157.9 116 69.8
Lj3g0025006 Lotus japonicus HOM05D005607 ORTHO05D008142 4.6e-37 157.9 100 77.0
Eucgr.F00890 Eucalyptus grandis HOM05D005607 ORTHO05D008142 6.0e-37 157.5 106 71.7
Sabra16G0259600 Salix brachista HOM05D005607 ORTHO05D008142 7.8e-37 157.1 104 73.1
MELO3C025610.2 Cucumis melo HOM05D005607 ORTHO05D008142 1.3e-36 156.4 101 73.3
TWI38G0301 Tripterygium wilfordii HOM05D005607 ORTHO05D008142 1.3e-36 156.4 106 68.9
Actinidia31524 Actinidia chinensis HOM05D005607 ORTHO05D008142 1.7e-36 156.0 103 75.7
PGR083G1887 Punica granatum HOM05D005607 ORTHO05D008142 1.7e-36 156.0 106 71.7
arahy.Tifrunner.gnm1.ann1.3D346W Arachis hypogaea HOM05D005607 ORTHO05D008142 3.9e-36 154.8 106 70.8
FAN25G1444 Fragaria x ananassa HOM05D005607 ORTHO05D008142 6.6e-36 154.1 103 73.8
Ciclev10007885m.g Citrus clementina HOM05D005607 ORTHO05D008142 8.6e-36 153.7 106 70.8
Rhsim06G0202700 Rhododendron simsii HOM05D005607 ORTHO05D008142 8.6e-36 153.7 106 74.5
Glyma.06G236100 Glycine max HOM05D005607 ORTHO05D008142 1.1e-35 153.3 97 77.3
vmacro11890 Vaccinium macrocarpon HOM05D005607 ORTHO05D008142 2.5e-35 152.1 103 74.8
vmacro23190 Vaccinium macrocarpon HOM05D005607 ORTHO05D008142 2.5e-35 152.1 103 74.8
PSO832G0774 Papaver somniferum HOM05D005607 ORTHO05D008142 3.3e-35 151.8 104 69.2
Nitab4.5_0008275g0010 Nicotiana tabacum HOM05D005607 ORTHO05D008142 5.6e-35 151.0 106 70.8
Sed0013999 Sechium edule HOM05D005607 ORTHO05D008142 7.3e-35 150.6 101 71.3
Lalb_Chr19g0134061 Lupinus albus HOM05D005607 ORTHO05D008142 9.5e-35 150.2 100 74.0
Nitab4.5_0002330g0110 Nicotiana tabacum HOM05D005607 ORTHO05D008142 1.6e-34 149.4 106 70.8
PSO210G5410 Papaver somniferum HOM05D005607 ORTHO05D008142 1.6e-34 149.4 104 68.3
AL3G27570 Arabidopsis lyrata HOM05D005607 ORTHO05D008142 3.6e-34 148.3 100 70.0
THA.LOC104815562 Tarenaya hassleriana HOM05D005607 ORTHO05D008142 3.6e-34 148.3 106 67.0
AT3G15180 Arabidopsis thaliana HOM05D005607 ORTHO05D008142 1.4e-33 146.4 100 68.0
Peaxi162Scf00069g01839 Petunia axillaris HOM05D005607 ORTHO05D008142 1.8e-33 146.0 106 69.8
EL10Ac4g08241 Beta vulgaris HOM05D005607 ORTHO05D008142 2.3e-33 145.6 99 69.7
FAN11G3919 Fragaria x ananassa HOM05D005607 ORTHO05D008142 2.3e-33 145.6 141 58.2
PGSC0003DMG400012404 Solanum tuberosum HOM05D005607 ORTHO05D008142 2.3e-33 145.6 106 67.9
Ca_23036_v3 Cicer arietinum L. HOM05D005607 ORTHO05D008142 3.1e-33 145.2 100 70.0
Ah.06g184600 Amaranthus hybridus HOM05D005607 ORTHO05D008142 4.0e-33 144.8 100 69.0
Sc16g0007180 Simmondsia chinensis HOM05D005607 ORTHO05D008142 4.0e-33 144.8 106 67.0
Carub.0003s1483 Capsella rubella HOM05D005607 ORTHO05D008142 6.8e-33 144.1 100 67.0
CAN.G162.36 Capsicum annuum HOM05D005607 ORTHO05D008142 6.8e-33 144.1 106 67.9
Cc05_g11730 Coffea canephora HOM05D005607 ORTHO05D008142 6.8e-33 144.1 106 70.8
Psat7g207160 Pisum sativum HOM05D005607 ORTHO05D008142 6.8e-33 144.1 100 69.0
Cpa.g.sc131.86 Carica papaya HOM05D005607 ORTHO05D008142 8.9e-33 143.7 106 67.0
Solyc07g062860.3 Solanum lycopersicum HOM05D005607 ORTHO05D008142 8.9e-33 143.7 106 67.9
Sopen07g031060 Solanum pennellii HOM05D005607 ORTHO05D008142 8.9e-33 143.7 106 67.9
TPR.G28174 Trifolium pratense HOM05D005607 ORTHO05D008142 8.9e-33 143.7 100 69.0
Medtr8g058790 Medicago truncatula HOM05D005607 ORTHO05D008142 1.2e-32 143.3 91 75.8
Medtr8g061280 Medicago truncatula HOM05D005607 ORTHO05D008142 1.2e-32 143.3 91 75.8
Oeu005401.4 Olea europaea HOM05D005607 ORTHO05D008142 2.0e-32 142.5 103 69.9
Thhalv10020515m.g Eutrema salsugineum HOM05D005607 ORTHO05D008142 5.8e-32 141.0 100 65.0
ECA236G2999 Erigeron canadensis HOM05D005607 ORTHO05D008142 2.9e-31 138.7 103 65.0
Lsat_1_v5_gn_7_104480 Lactuca sativa HOM05D005607 ORTHO05D008142 3.8e-31 138.3 103 65.0
Sp3g13390 Schrenkiella parvula HOM05D005607 ORTHO05D008142 6.4e-31 137.5 105 60.0
SGA_v2.0_scaffold130G34350 Striga asiatica HOM05D005607 ORTHO05D008142 1.4e-30 136.3 106 66.0
BcaB06g29542 Brassica carinata HOM05D005607 ORTHO05D008142 3.2e-30 135.2 97 63.9
BolC5t33890H Brassica oleracea HOM05D005607 ORTHO05D008142 3.2e-30 135.2 97 63.9
VMungo1127G0827 Vigna mungo HOM05D005607 ORTHO05D008142 3.2e-30 135.2 95 69.5
BraA05t22250Z Brassica rapa HOM05D005607 ORTHO05D008142 4.1e-30 134.8 100 62.0
HanXRQChr15g0495421 Helianthus annuus HOM05D005607 ORTHO05D008142 4.1e-30 134.8 103 64.1
Aa31LG8G2380 Aethionema arabicum HOM05D005607 ORTHO05D008142 1.0e-28 130.2 100 62.0
MSTRG.12893 Avicennia marina HOM05D005607 ORTHO05D008142 1.7e-28 129.4 106 62.3
DCAR_017123 Daucus carota HOM05D005607 ORTHO05D008142 3.0e-28 128.6 103 65.0
CDE10G0361 Ceratophyllum demersum HOM05D005607 ORTHO05D008142 5.1e-28 127.9 104 60.6
C05p52050 Brassica napus HOM05D005607 ORTHO05D008142 2.8e-26 122.1 95 61.1
A05p34290 Brassica napus HOM05D005607 ORTHO05D008142 4.7e-26 121.3 82 67.1
ATR0737G117 Amborella trichopoda HOM05D005607 ORTHO05D008142 1.2e-24 116.7 94 61.7
Os05g0557200 Oryza sativa ssp. japonica HOM05D005607 ORTHO05D008142 8.4e-23 110.5 93 48.4
Zm00001eb295460 Zea mays HOM05D005607 ORTHO05D008142 7.8e-21 104.0 105 43.8
Pp3c1_12630 Physcomitrium patens HOM05D005607 ORTHO05D008142 8.7e-20 100.5 85 54.1
AagrBONN_evm.TU.Sc2ySwM_344.1287 Anthoceros agrestis HOM05D005607 ORTHO05D008142 4.9e-15 84.7 84 51.2
CBR_g2888 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-12 76.6 77 49.4
SMO139G0024 Selaginella moellendorffii HOM05D005607 ORTHO05D008142 4.8e-10 68.2 93 37.6
SMO145G0057 Selaginella moellendorffii HOM05D005607 ORTHO05D008142 1.4e-09 66.6 97 36.1
AUR62036159 Chenopodium quinoa HOM05D005607 ORTHO05D008142 1.1e-06 57.0 44 59.1
AUR62019473 Chenopodium quinoa HOM05D005607 ORTHO05D008142 9.3e-06 53.9 44 56.8


User provided reference genes

Program Settings