Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 2.0e-267 925.2 493 100.0
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 8.1e-232 807.0 488 86.3
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 5.1e-226 787.7 488 85.2
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 7.4e-225 783.9 492 86.2
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 4.6e-219 764.6 489 81.2
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 2.8e-216 755.4 484 80.8
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 4.8e-216 754.6 492 80.3
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 6.2e-216 754.2 489 80.2
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 1.4e-215 753.1 492 80.3
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 2.4e-215 752.3 489 80.6
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 2.4e-215 752.3 463 82.5
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 3.1e-215 751.9 494 80.6
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 4.0e-215 751.5 464 82.1
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 7.6e-214 747.3 461 82.9
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 1.0e-213 746.9 451 84.0
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 1.7e-213 746.1 493 79.9
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 6.5e-213 744.2 461 82.4
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 6.5e-213 744.2 487 79.5
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 1.1e-212 743.4 461 82.2
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 7.1e-212 740.7 440 85.5
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 7.1e-212 740.7 468 81.4
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 9.3e-212 740.3 470 85.3
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 1.2e-211 740.0 486 79.0
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 2.1e-211 739.2 450 83.1
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 2.7e-211 738.8 464 81.0
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 4.6e-211 738.0 432 86.8
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 6.0e-211 737.6 456 81.8
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 7.9e-211 737.3 484 79.5
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 7.9e-211 737.3 434 86.6
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 1.0e-210 736.9 449 82.6
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 3.0e-210 735.3 438 84.5
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 5.1e-210 734.6 450 81.6
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 6.7e-210 734.2 441 83.2
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 8.7e-210 733.8 450 82.2
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.1e-209 733.4 468 81.8
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 1.9e-209 732.6 488 77.7
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 2.5e-209 732.3 479 79.1
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 3.3e-209 731.9 448 83.5
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 1.3e-208 729.9 448 81.5
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 1.6e-208 729.6 479 77.7
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.2e-208 729.2 434 85.3
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 2.2e-208 729.2 458 80.8
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 2.2e-208 729.2 438 84.9
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 2.8e-208 728.8 440 83.0
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 2.8e-208 728.8 439 83.6
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 4.8e-208 728.0 449 82.2
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 6.3e-208 727.6 438 84.5
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 6.3e-208 727.6 439 84.3
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.1e-207 726.9 436 84.4
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 1.4e-207 726.5 488 76.2
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 1.8e-207 726.1 490 76.5
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 1.8e-207 726.1 436 83.0
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 1.8e-207 726.1 438 84.2
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 6.9e-207 724.2 457 80.1
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 2.0e-206 722.6 467 79.0
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 2.6e-206 722.2 439 83.4
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 2.6e-206 722.2 437 82.8
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 5.9e-206 721.1 465 78.9
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 7.6e-206 720.7 461 79.4
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 1.0e-205 720.3 456 80.0
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 2.2e-205 719.2 439 82.7
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 2.9e-205 718.8 436 83.7
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 6.5e-205 717.6 448 81.5
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 2.5e-204 715.7 451 78.7
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 4.2e-204 714.9 439 80.9
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.2e-203 713.4 440 81.6
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 2.1e-203 712.6 465 78.7
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 4.6e-203 711.4 436 83.3
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 4.6e-203 711.4 434 81.8
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 6.1e-203 711.1 439 80.9
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 6.1e-203 711.1 436 82.6
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 6.1e-203 711.1 447 79.6
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.4e-202 709.9 485 77.1
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 1.8e-202 709.5 445 79.6
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.8e-202 709.5 486 76.7
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 2.3e-202 709.1 435 82.3
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 3.0e-202 708.8 439 80.4
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 8.8e-202 707.2 437 81.2
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 1.1e-201 706.8 437 80.5
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 1.1e-201 706.8 437 80.5
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 1.5e-201 706.4 444 81.3
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 1.5e-201 706.4 440 80.7
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 1.5e-201 706.4 439 80.2
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 1.5e-201 706.4 439 80.2
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 1.9e-201 706.1 439 80.2
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 2.5e-201 705.7 437 80.5
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 2.5e-201 705.7 437 80.5
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 3.3e-201 705.3 445 79.3
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 4.3e-201 704.9 436 80.7
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 5.7e-201 704.5 436 80.3
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 7.4e-201 704.1 437 80.3
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 2.8e-200 702.2 452 80.1
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 3.7e-200 701.8 444 81.1
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 8.2e-200 700.7 439 79.5
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 8.2e-200 700.7 439 79.5
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 8.2e-200 700.7 435 81.4
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 8.2e-200 700.7 436 80.3
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 2.4e-199 699.1 436 79.8
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 4.1e-199 698.4 436 80.3
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 4.1e-199 698.4 485 76.1
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 5.3e-199 698.0 435 80.5
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 1.5e-198 696.4 488 74.8
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 2.0e-198 696.0 436 80.0
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 2.0e-198 696.0 439 79.0
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 5.9e-198 694.5 435 79.8
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 2.5e-196 689.1 463 76.5
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 2.5e-196 689.1 435 79.8
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 9.4e-196 687.2 477 75.1
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 4.7e-195 684.9 448 78.6
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 1.4e-194 683.3 431 79.1
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 3.0e-194 682.2 431 79.4
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 5.1e-194 681.4 431 78.9
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 1.3e-189 666.8 437 76.7
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 3.2e-188 662.1 412 81.1
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 3.0e-186 655.6 458 71.8
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 9.1e-183 644.0 386 83.7
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 2.7e-179 632.5 432 72.2
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 5.7e-177 624.8 435 74.0
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 2.2e-173 612.8 432 70.6
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 7.2e-172 607.8 469 67.2
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 2.7e-171 605.9 438 69.6
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 4.7e-171 605.1 427 72.8
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 1.3e-165 587.0 430 68.4
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 5.2e-162 575.1 427 67.7
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 7.5e-161 571.2 438 66.4
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 5.4e-159 565.1 359 79.1
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 7.3e-156 554.7 474 65.8
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 3.2e-151 539.3 428 65.4
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 9.2e-143 511.1 318 82.4
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 1.5e-140 503.8 315 81.3
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 2.2e-128 463.4 319 78.7
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 1.5e-113 414.1 233 87.1
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 2.7e-110 403.3 330 66.7
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.8e-109 400.6 438 49.5
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 9.6e-108 394.8 258 77.1
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 1.1e-106 391.3 295 71.2
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 1.9e-103 380.6 258 74.8
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 1.8e-93 347.4 181 95.6
Peaxi162Scf00112g01719 Petunia axillaris HOM05D004109 ORTHO05D005867 7.9e-86 322.0 219 76.3
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 3.0e-85 320.1 177 88.1
Haze_01911 Corylus avellana HOM05D004109 ORTHO05D001172 3.3e-84 316.6 229 83.0
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 3.3e-84 316.6 404 50.5
Actinidia34688 Actinidia chinensis HOM05D004109 ORTHO05D005867 2.9e-80 303.5 201 78.6
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 1.3e-67 261.5 217 64.5
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 6.3e-67 259.2 219 64.4
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 1.6e-65 254.6 217 63.1
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 1.7e-64 251.1 241 58.9
PSO675G6350 Papaver somniferum HOM05D004109 ORTHO05D005867 1.7e-64 251.1 182 70.9
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 2.5e-63 247.3 427 38.2
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 1.6e-62 244.6 295 45.8
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 4.4e-60 236.5 215 60.0
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 1.1e-58 231.9 122 92.6
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.4e-52 210.3 116 88.8
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.5e-41 173.7 94 89.4
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 6.6e-40 169.5 87 94.3
SMO137G0105 Selaginella moellendorffii HOM05D004109 ORTHO05D019780 2.1e-38 164.5 174 55.7
vmacro20533 Vaccinium macrocarpon HOM05D004109 ORTHO05D000800 2.4e-26 124.4 160 49.4
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 2.1e-25 121.3 133 44.4
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 3.9e-24 117.1 102 61.8
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 1.1e-23 115.5 208 40.4
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 2.3e-21 107.8 67 77.6
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 3.4e-20 104.0 122 50.8
vmacro20532 Vaccinium macrocarpon HOM05D004109 ORTHO05D426529 1.3e-19 102.1 126 53.2
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 1.7e-19 101.7 59 84.7
PSO063G0645 Papaver somniferum HOM05D004109 ORTHO05D019780 8.6e-16 89.4 57 75.4
AagrBONN_evm.TU.Sc2ySwM_117.3019 Anthoceros agrestis HOM05D000719 ORTHO05D000569 2.5e-15 87.8 66 68.2
BolC3t18268H Brassica oleracea HOM05D004109 ORTHO05D005867 2.5e-15 87.8 45 95.6
Actinidia02690 Actinidia chinensis HOM05D004109 ORTHO05D054316 5.2e-13 80.1 53 77.4
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 1.7e-11 75.1 48 79.2
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 1.4e-10 72.0 69 60.9
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 1.4e-10 72.0 46 73.9
vmacro20529 Vaccinium macrocarpon HOM05D004109 ORTHO05D427059 4.2e-10 70.5 75 52.0
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 1.3e-08 65.5 37 89.2
Zm00001eb213480 Zea mays HOM05D002921 ORTHO05D003258 5.1e-08 63.5 96 47.9
SMO137G0306 Selaginella moellendorffii HOM05D004109 ORTHO05D377039 2.8e-06 57.8 31 80.6


User provided reference genes

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