Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p022713 Quercus lobata HOM05D006259 ORTHO05D007804 2.3e-224 781.9 401 100.0
Cfa020561 Carpinus fangiana HOM05D006259 ORTHO05D007804 1.1e-159 567.0 387 77.8
CiPaw.11G171900 Carya illinoinensis HOM05D006259 ORTHO05D007804 5.3e-157 558.1 391 74.2
Haze_09453 Corylus avellana HOM05D006259 ORTHO05D007804 1.6e-153 546.6 386 74.6
Prupe.4G176500 Prunus persica HOM05D006259 ORTHO05D007804 4.0e-136 488.8 325 75.4
MD11G1252500 Malus domestica HOM05D006259 ORTHO05D007804 5.4e-133 478.4 393 65.1
CSS0047678 Camellia sinensis var. sinensis HOM05D006259 ORTHO05D007804 3.6e-129 465.7 398 62.8
CSS0047365 Camellia sinensis var. sinensis HOM05D006259 ORTHO05D007804 4.7e-129 465.3 398 62.8
RcHm_v2.0_Chr5g0032751 Rosa chinensis HOM05D006259 ORTHO05D007804 1.4e-128 463.8 381 64.0
Potri.011G116100 Populus trichocarpa HOM05D006259 ORTHO05D007804 2.0e-127 459.9 382 66.8
FvH4_3g19490 Fragaria vesca HOM05D006259 ORTHO05D007804 7.5e-127 458.0 386 62.7
Dinv20198 Davidia involucrata HOM05D006259 ORTHO05D007804 1.3e-126 457.2 300 76.0
Ciclev10008595m.g Citrus clementina HOM05D006259 ORTHO05D007804 1.7e-126 456.8 400 60.8
Manes.15G089200 Manihot esculenta HOM05D006259 ORTHO05D007804 1.7e-126 456.8 384 64.3
FAN11G4033 Fragaria x ananassa HOM05D006259 ORTHO05D007804 3.5e-124 449.1 386 62.2
Aqoxy1G02333 Aquilegia oxysepala HOM05D006259 ORTHO05D007804 2.3e-123 446.4 382 62.3
Duzib268G0576 Durio zibethinus HOM05D006259 ORTHO05D007804 5.0e-123 445.3 390 63.1
CANSAT56G1257 Cannabis sativa HOM05D006259 ORTHO05D007804 1.9e-122 443.4 314 71.0
GSVIVG01014295001 Vitis vinifera HOM05D006259 ORTHO05D007804 4.3e-122 442.2 384 62.2
Sabra11G0101700 Salix brachista HOM05D006259 ORTHO05D007804 3.1e-120 436.0 425 58.1
vmacro11886 Vaccinium macrocarpon HOM05D006259 ORTHO05D007804 4.0e-120 435.6 394 60.7
TAR629G2204 Trochodendron aralioides HOM05D006259 ORTHO05D007804 1.5e-119 433.7 289 72.7
Cpa.g.sc622.1 Carica papaya HOM05D006259 ORTHO05D007804 7.5e-119 431.4 388 64.2
Ciclev10010717m.g Citrus clementina HOM05D006259 ORTHO05D007804 7.5e-119 431.4 308 70.5
TWI39G0898 Tripterygium wilfordii HOM05D006259 ORTHO05D007804 3.2e-117 426.0 316 65.8
MSTRG.15241 Avicennia marina HOM05D006259 ORTHO05D007804 5.4e-117 425.2 388 57.7
Nitab4.5_0002330g0080 Nicotiana tabacum HOM05D006259 ORTHO05D007804 5.4e-117 425.2 317 67.5
Glyma.06G237700 Glycine max HOM05D006259 ORTHO05D007804 7.1e-117 424.9 308 66.9
Lalb_Chr19g0134121 Lupinus albus HOM05D006259 ORTHO05D007804 2.7e-116 422.9 397 58.2
Gorai.009G375900 Gossypium raimondii HOM05D006259 ORTHO05D007804 3.5e-116 422.5 387 59.7
Sc16g0007160 Simmondsia chinensis HOM05D006259 ORTHO05D007804 1.7e-115 420.2 386 57.8
Lj8A154G76 Lonicera japonica HOM05D006259 ORTHO05D007804 3.9e-115 419.1 389 58.6
Nitab4.5_0005017g0010 Nicotiana tabacum HOM05D006259 ORTHO05D007804 5.1e-115 418.7 317 66.2
Migut.M00783 Erythranthe guttata HOM05D006259 ORTHO05D007804 1.2e-113 414.1 400 55.5
Thecc.07G095600 Theobroma cacao HOM05D006259 ORTHO05D007804 1.2e-113 414.1 300 70.3
Sed0019446 Sechium edule HOM05D006259 ORTHO05D007804 6.2e-113 411.8 317 64.4
FAN25G1146 Fragaria x ananassa HOM05D006259 ORTHO05D007804 1.1e-112 411.0 348 63.2
Peaxi162Scf00069g01731 Petunia axillaris HOM05D006259 ORTHO05D007804 1.4e-112 410.6 388 57.5
Duzib244G0007 Durio zibethinus HOM05D006259 ORTHO05D007804 1.8e-112 410.2 387 59.4
Phvul.011G163100 Phaseolus vulgaris HOM05D006259 ORTHO05D007804 2.3e-112 409.8 322 63.4
FAN16G3026 Fragaria x ananassa HOM05D006259 ORTHO05D007804 3.1e-112 409.5 348 62.6
Hund02234 Selenicereus undatus HOM05D006259 ORTHO05D007804 4.0e-112 409.1 389 56.8
Solyc07g062930.3 Solanum lycopersicum HOM05D006259 ORTHO05D007804 4.0e-112 409.1 390 58.7
Lsat_1_v5_gn_7_104661 Lactuca sativa HOM05D006259 ORTHO05D007804 5.2e-112 408.7 390 55.9
Sopen07g031120 Solanum pennellii HOM05D006259 ORTHO05D007804 1.2e-111 407.5 390 58.2
VMungo1127G0077 Vigna mungo HOM05D006259 ORTHO05D007804 3.4e-111 406.0 315 64.4
Cc05_g11780 Coffea canephora HOM05D006259 ORTHO05D007804 4.4e-111 405.6 400 55.5
Medtr8g058780 Medicago truncatula HOM05D006259 ORTHO05D007804 4.4e-111 405.6 311 65.0
Medtr8g061260 Medicago truncatula HOM05D006259 ORTHO05D007804 4.4e-111 405.6 311 65.0
EL10Ac4g08228 Beta vulgaris HOM05D006259 ORTHO05D007804 7.6e-111 404.8 390 56.7
THA.LOC104811875 Tarenaya hassleriana HOM05D006259 ORTHO05D007804 9.9e-111 404.4 322 64.6
ClCG11G017880 Citrullus lanatus HOM05D006259 ORTHO05D007804 1.4e-109 400.6 383 55.1
TPR.G32110 Trifolium pratense HOM05D006259 ORTHO05D007804 1.4e-109 400.6 323 63.8
FAN21G1610 Fragaria x ananassa HOM05D006259 ORTHO05D007804 1.9e-109 400.2 383 60.8
arahy.Tifrunner.gnm1.ann1.J8ZMQ9 Arachis hypogaea HOM05D006259 ORTHO05D007804 4.1e-109 399.1 417 51.8
CsaV3_4G033510 Cucumis sativus L. HOM05D006259 ORTHO05D007804 9.2e-109 397.9 318 63.2
Lj3g0016272 Lotus japonicus HOM05D006259 ORTHO05D007804 2.7e-108 396.4 390 56.2
MELO3C025605.2 Cucumis melo HOM05D006259 ORTHO05D007804 3.9e-107 392.5 311 63.3
arahy.Tifrunner.gnm1.ann1.KCB6L6 Arachis hypogaea HOM05D006259 ORTHO05D007804 5.1e-107 392.1 411 51.8
HanXRQChr11g0351981 Helianthus annuus HOM05D006259 ORTHO05D007804 1.5e-106 390.6 395 54.2
AUR62019461 Chenopodium quinoa HOM05D006259 ORTHO05D007804 1.9e-106 390.2 391 54.7
DCAR_017124 Daucus carota HOM05D006259 ORTHO05D007804 2.5e-106 389.8 321 60.7
ECA236G1201 Erigeron canadensis HOM05D006259 ORTHO05D007804 2.8e-105 386.3 321 59.8
Rhsim06G0201700 Rhododendron simsii HOM05D006259 ORTHO05D007804 3.6e-105 386.0 413 53.5
SGA_v2.0_scaffold73G24236 Striga asiatica HOM05D006259 ORTHO05D007804 3.6e-105 386.0 408 53.2
ATR0150G016 Amborella trichopoda HOM05D006259 ORTHO05D007804 3.1e-104 382.9 315 60.6
Psat4g178120 Pisum sativum HOM05D006259 ORTHO05D007804 6.9e-104 381.7 310 60.6
PGR083G2616 Punica granatum HOM05D006259 ORTHO05D007804 3.4e-103 379.4 357 59.9
Ah.04g164700 Amaranthus hybridus HOM05D006259 ORTHO05D007804 3.8e-102 375.9 393 54.2
Atru.chr2.2422 Acer truncatum HOM05D006259 ORTHO05D007804 8.4e-102 374.8 236 76.3
HPP92_017550 Vanilla planifolia HOM05D006259 ORTHO05D007804 1.6e-100 370.5 320 60.3
Eucgr.F01160 Eucalyptus grandis HOM05D006259 ORTHO05D007804 2.7e-100 369.8 282 65.6
AL8G29030 Arabidopsis lyrata HOM05D006259 ORTHO05D007804 4.6e-100 369.0 328 59.8
CAN.G162.38 Capsicum annuum HOM05D006259 ORTHO05D007804 1.3e-99 367.5 293 62.5
CARHR267060 Cardamine hirsuta HOM05D006259 ORTHO05D007804 2.3e-99 366.7 319 58.9
Thhalv10015851m.g Eutrema salsugineum HOM05D006259 ORTHO05D007804 8.7e-99 364.8 330 58.8
BcaB05g22091 Brassica carinata HOM05D006259 ORTHO05D007804 2.5e-98 363.2 392 52.0
AT5G53920 Arabidopsis thaliana HOM05D006259 ORTHO05D007804 4.3e-98 362.5 328 57.9
Carub.0008s1423 Capsella rubella HOM05D006259 ORTHO05D007804 7.3e-98 361.7 331 57.1
Sp6g16000 Schrenkiella parvula HOM05D006259 ORTHO05D007804 2.1e-97 360.1 326 58.0
Oeu025362.1 Olea europaea HOM05D006259 ORTHO05D007804 3.6e-97 359.4 401 51.9
BcaC03g14368 Brassica carinata HOM05D006259 ORTHO05D007804 1.4e-96 357.5 333 56.2
PSO541G2103 Papaver somniferum HOM05D006259 ORTHO05D007804 1.4e-96 357.5 291 61.9
Os05g0497675 Oryza sativa ssp. japonica HOM05D006259 ORTHO05D007804 1.5e-95 354.0 319 55.2
CDE05G3386 Ceratophyllum demersum HOM05D006259 ORTHO05D007804 5.8e-95 352.1 297 60.3
A02p10700 Brassica napus HOM05D006259 ORTHO05D007804 1.3e-94 350.9 333 55.6
C02p17820 Brassica napus HOM05D006259 ORTHO05D007804 1.3e-94 350.9 346 54.6
PSO675G6900 Papaver somniferum HOM05D006259 ORTHO05D007804 1.7e-94 350.5 291 61.5
BolC2t07911H Brassica oleracea HOM05D006259 ORTHO05D007804 2.2e-94 350.1 348 54.3
Gohir.A04G035300 Gossypium hirsutum HOM05D006259 ORTHO05D007804 2.4e-93 346.7 387 52.2
Aa31LG3G10030 Aethionema arabicum HOM05D006259 ORTHO05D007804 2.7e-92 343.2 318 56.0
BraA02t06133Z Brassica rapa HOM05D006259 ORTHO05D007804 7.9e-92 341.7 341 54.3
Nn1g06450 Nelumbo nucifera HOM05D006259 ORTHO05D007804 2.3e-91 340.1 308 57.1
Gohir.D05G348100 Gossypium hirsutum HOM05D006259 ORTHO05D007804 1.3e-89 334.3 238 70.2
unitig_46.g18320 Utricularia gibba HOM05D006259 ORTHO05D007804 9.3e-85 318.2 382 48.2
Mapoly0161s0032 Marchantia polymorpha HOM05D006259 ORTHO05D007804 5.3e-80 302.4 334 47.3
arahy.Tifrunner.gnm1.ann1.JJTS0M Arachis hypogaea HOM05D006259 ORTHO05D007804 5.8e-79 298.9 226 64.6
arahy.Tifrunner.gnm1.ann1.IZH9YM Arachis hypogaea HOM05D006259 ORTHO05D007804 1.7e-78 297.4 220 65.0
Pp3c22_15620 Physcomitrium patens HOM05D006259 ORTHO05D007804 9.6e-74 281.6 334 44.6
Hma1.2p1_1411F.1_g281740 Hydrangea macrophylla HOM05D006259 ORTHO05D007804 1.2e-71 274.6 204 72.5
AagrBONN_evm.TU.Sc2ySwM_362.1898 Anthoceros agrestis HOM05D006259 ORTHO05D007804 4.3e-66 256.1 356 39.9
COL.COLO4_36712 Corchorus olitorius HOM05D006259 ORTHO05D007804 3.8e-62 243.0 263 54.4
Actinidia09701 Actinidia chinensis HOM05D006259 ORTHO05D007804 2.5e-61 240.4 176 68.2
AUR62036169 Chenopodium quinoa HOM05D006259 ORTHO05D007804 2.3e-59 233.8 249 52.2
Zm00001eb352610 Zea mays HOM05D006259 ORTHO05D007804 8.8e-51 205.3 175 56.6
arahy.Tifrunner.gnm1.ann1.NGC2LD Arachis hypogaea HOM05D006259 ORTHO05D007804 2.8e-49 200.3 264 42.4
SMO230G0105 Selaginella moellendorffii HOM05D006259 ORTHO05D007804 1.2e-47 194.9 198 47.5
arahy.Tifrunner.gnm1.ann1.88153A Arachis hypogaea HOM05D006259 ORTHO05D007804 1.0e-46 191.8 265 41.5
arahy.Tifrunner.gnm1.ann1.N67PK3 Arachis hypogaea HOM05D006259 ORTHO05D007804 1.0e-46 191.8 295 39.3
arahy.Tifrunner.gnm1.ann1.Y39XKR Arachis hypogaea HOM05D006259 ORTHO05D007804 2.9e-46 190.3 191 51.8
arahy.Tifrunner.gnm1.ann1.UFBT31 Arachis hypogaea HOM05D006259 ORTHO05D007804 3.2e-45 186.8 255 42.4
Thecc.02G165400 Theobroma cacao HOM05D006259 ORTHO05D007804 1.4e-43 181.4 183 54.1
MCO08G332 Micromonas commoda HOM05D006259 ORTHO05D007804 1.8e-43 181.0 314 35.0
MBI18_g48079_MAGBIO Magnolia biondii HOM05D006259 ORTHO05D007804 4.0e-43 179.9 155 60.6
Cre09.g396735 Chlamydomonas reinhardtii HOM05D006259 ORTHO05D007804 5.2e-43 179.5 326 35.0
PRCOL_00006646 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 1.4e-40 171.4 237 36.7
arahy.Tifrunner.gnm1.ann1.SB88KA Arachis hypogaea HOM05D006259 ORTHO05D007804 1.8e-40 171.0 293 35.8
PRCOL_00002790 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 2.9e-38 163.7 249 36.9
arahy.Tifrunner.gnm1.ann1.H7I8JY Arachis hypogaea HOM05D006259 ORTHO05D007804 5.5e-37 159.5 149 53.0
arahy.Tifrunner.gnm1.ann1.LRZU8J Arachis hypogaea HOM05D006259 ORTHO05D007804 1.6e-36 157.9 253 38.3
arahy.Tifrunner.gnm1.ann1.5V52A0 Arachis hypogaea HOM05D006259 ORTHO05D007804 1.5e-34 151.4 136 53.7
COL.COLO4_00923 Corchorus olitorius HOM05D006259 ORTHO05D007804 9.1e-32 142.1 268 30.2
HPP92_017577 Vanilla planifolia HOM05D006259 ORTHO05D007804 2.5e-29 134.0 194 43.3
Duzib213G0106 Durio zibethinus HOM05D006259 ORTHO05D007804 2.2e-25 120.9 103 59.2
PRCOL_00002336 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 4.7e-20 103.2 233 29.2
Atru.chr2.2423 Acer truncatum HOM05D006259 ORTHO05D007804 2.7e-15 87.4 136 43.4
arahy.Tifrunner.gnm1.ann1.69KWVE Arachis hypogaea HOM05D007267 ORTHO05D009053 5.8e-10 69.7 52 61.5
Actinidia09700 Actinidia chinensis HOM05D006259 ORTHO05D053169 1.7e-09 68.2 52 67.3
arahy.Tifrunner.gnm1.ann1.BBFR3C Arachis hypogaea HOM05D003566 ORTHO05D009053 2.9e-09 67.4 50 62.0
arahy.Tifrunner.gnm1.ann1.I3MG1X Arachis hypogaea HOM05D001891 ORTHO05D005832 7.8e-07 59.3 41 63.4


User provided reference genes

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