Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p022081 Quercus lobata HOM05D002373 ORTHO05D008661 7.7e-175 617.1 320 100.0
Cfa020577 Carpinus fangiana HOM05D002373 ORTHO05D008661 3.5e-143 511.9 317 84.9
CiPaw.11G170200 Carya illinoinensis HOM05D002373 ORTHO05D008661 4.2e-128 461.8 340 73.8
Haze_09434 Corylus avellana HOM05D002373 ORTHO05D008661 5.8e-122 441.4 317 75.4
RcHm_v2.0_Chr5g0033281 Rosa chinensis HOM05D002373 ORTHO05D008661 1.3e-121 440.3 329 70.2
Thecc.07G090300 Theobroma cacao HOM05D002373 ORTHO05D008661 1.3e-121 440.3 329 71.4
FvH4_3g19840 Fragaria vesca HOM05D002373 ORTHO05D008661 2.2e-121 439.5 329 69.9
Ciclev10008924m.g Citrus clementina HOM05D002373 ORTHO05D008661 1.4e-120 436.8 329 68.1
MD11G1252400 Malus domestica HOM05D002373 ORTHO05D008661 1.2e-119 433.7 329 70.2
FAN11G3740 Fragaria x ananassa HOM05D002373 ORTHO05D008661 1.6e-119 433.3 329 69.3
CANSAT56G3654 Cannabis sativa HOM05D002373 ORTHO05D008661 2.7e-119 432.6 330 68.8
FAN25G2634 Fragaria x ananassa HOM05D002373 ORTHO05D008661 1.0e-118 430.6 329 68.7
Gohir.D13G151000 Gossypium hirsutum HOM05D002373 ORTHO05D008661 1.3e-118 430.3 329 68.1
GSVIVG01014327001 Vitis vinifera HOM05D002373 ORTHO05D008661 1.3e-118 430.3 329 67.8
TAR624G1149 Trochodendron aralioides HOM05D002373 ORTHO05D008661 8.7e-118 427.6 329 67.2
Gohir.A13G146100 Gossypium hirsutum HOM05D002373 ORTHO05D008661 1.9e-117 426.4 329 66.9
Prupe.4G180500 Prunus persica HOM05D002373 ORTHO05D008661 1.9e-117 426.4 329 69.0
COL.COLO4_27178 Corchorus olitorius HOM05D002373 ORTHO05D008661 1.3e-116 423.7 328 69.5
Actinidia35249 Actinidia chinensis HOM05D002373 ORTHO05D008661 3.1e-115 419.1 329 66.9
CSS0006904 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 9.0e-115 417.5 329 66.3
Glyma.12G224900 Glycine max HOM05D002373 ORTHO05D008661 1.2e-114 417.2 331 66.5
Medtr2g085340 Medicago truncatula HOM05D002373 ORTHO05D008661 3.4e-114 415.6 320 68.4
HanXRQChr12g0364201 Helianthus annuus HOM05D002373 ORTHO05D008661 1.3e-113 413.7 277 70.8
arahy.Tifrunner.gnm1.ann1.CVL1T8 Arachis hypogaea HOM05D002373 ORTHO05D008661 2.2e-113 412.9 330 67.3
Cpa.g.sc80.70 Carica papaya HOM05D002373 ORTHO05D008661 2.2e-113 412.9 329 67.8
arahy.Tifrunner.gnm1.ann1.D1WMTZ Arachis hypogaea HOM05D002373 ORTHO05D008661 3.8e-113 412.1 330 67.3
Lj3g0019501 Lotus japonicus HOM05D002373 ORTHO05D008661 6.4e-113 411.4 328 67.4
CARHR043340 Cardamine hirsuta HOM05D002373 ORTHO05D008661 3.2e-112 409.1 332 63.6
Aa31LG10G2010 Aethionema arabicum HOM05D002373 ORTHO05D008661 4.2e-112 408.7 330 64.5
Dinv20179 Davidia involucrata HOM05D002373 ORTHO05D008661 5.5e-112 408.3 331 65.6
THA.LOC104810464 Tarenaya hassleriana HOM05D002373 ORTHO05D008661 7.1e-112 407.9 328 66.2
AL1G61480 Arabidopsis lyrata HOM05D002373 ORTHO05D008661 9.3e-112 407.5 329 63.8
Psat5g243920 Pisum sativum HOM05D002373 ORTHO05D008661 2.1e-111 406.4 318 68.6
BolC6t36626H Brassica oleracea HOM05D002373 ORTHO05D008661 2.7e-111 406.0 329 62.3
BcaC08g44045 Brassica carinata HOM05D002373 ORTHO05D008661 3.5e-111 405.6 329 62.3
Lalb_Chr25g0286331 Lupinus albus HOM05D002373 ORTHO05D008661 4.6e-111 405.2 321 67.0
Nn1g04122 Nelumbo nucifera HOM05D002373 ORTHO05D008661 4.6e-111 405.2 294 70.1
Eucgr.F01146 Eucalyptus grandis HOM05D002373 ORTHO05D008661 7.9e-111 404.4 329 66.3
VMungo1080G1315 Vigna mungo HOM05D002373 ORTHO05D008661 1.0e-110 404.1 328 65.5
AT1G53120 Arabidopsis thaliana HOM05D002373 ORTHO05D008661 1.8e-110 403.3 329 63.8
A05p18620 Brassica napus HOM05D002373 ORTHO05D008661 1.8e-110 403.3 330 62.7
Potri.011G119800 Populus trichocarpa HOM05D002373 ORTHO05D008661 1.8e-110 403.3 330 65.5
Thhalv10011660m.g Eutrema salsugineum HOM05D002373 ORTHO05D008661 2.3e-110 402.9 331 61.0
Sp1g39670 Schrenkiella parvula HOM05D002373 ORTHO05D008661 3.0e-110 402.5 331 61.6
C06p14460 Brassica napus HOM05D002373 ORTHO05D008661 3.9e-110 402.1 329 61.7
Carub.0001s4228 Capsella rubella HOM05D002373 ORTHO05D008661 3.9e-110 402.1 331 61.3
Ca_03504_v3 Cicer arietinum L. HOM05D002373 ORTHO05D008661 5.1e-110 401.7 328 65.2
CSS0005109 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 6.7e-110 401.4 330 65.2
Lsat_1_v5_gn_9_97941 Lactuca sativa HOM05D002373 ORTHO05D008661 8.7e-110 401.0 274 69.3
BcaB02g10929 Brassica carinata HOM05D002373 ORTHO05D005805 1.1e-109 400.6 330 63.0
DCAR_019560 Daucus carota HOM05D002373 ORTHO05D008661 1.1e-109 400.6 277 69.7
Atru.BG.257.p Acer truncatum HOM05D002373 ORTHO05D008661 1.5e-109 400.2 249 77.9
Phvul.002G286700 Phaseolus vulgaris HOM05D002373 ORTHO05D008661 1.9e-109 399.8 328 65.5
Atru.BG.152.p Acer truncatum HOM05D002373 ORTHO05D008661 2.5e-109 399.4 249 77.9
ECA240G3063 Erigeron canadensis HOM05D002373 ORTHO05D008661 3.3e-109 399.1 285 67.0
TPR.G39017 Trifolium pratense HOM05D002373 ORTHO05D008661 1.3e-108 397.1 277 72.2
MBI06_g23077_MAGBIO Magnolia biondii HOM05D002373 ORTHO05D008661 1.6e-108 396.7 329 62.6
Sabra11G0104200 Salix brachista HOM05D002373 ORTHO05D008661 2.1e-108 396.4 267 72.3
Sed0026190 Sechium edule HOM05D002373 ORTHO05D008661 4.8e-108 395.2 324 63.6
BraA05t20753Z Brassica rapa HOM05D002373 ORTHO05D008661 1.1e-107 394.0 268 70.5
PGR083G2563 Punica granatum HOM05D002373 ORTHO05D008661 1.4e-107 393.7 332 62.3
MELO3C019408.2 Cucumis melo HOM05D002373 ORTHO05D008661 4.0e-107 392.1 271 71.6
CsaV3_3G019460 Cucumis sativus L. HOM05D002373 ORTHO05D008661 6.9e-107 391.3 327 63.0
ClCG05G009320 Citrullus lanatus HOM05D002373 ORTHO05D008661 5.8e-106 388.3 341 61.3
Migut.H01944 Erythranthe guttata HOM05D002373 ORTHO05D008661 1.3e-105 387.1 331 61.9
CAN.G213.9 Capsicum annuum HOM05D002373 ORTHO05D008661 1.1e-104 384.0 283 66.4
FAN16G2188 Fragaria x ananassa HOM05D002373 ORTHO05D008661 1.9e-104 383.3 235 77.9
Lj1C842T3 Lonicera japonica HOM05D002373 ORTHO05D008661 1.9e-104 383.3 329 60.2
Sopen12g007190 Solanum pennellii HOM05D002373 ORTHO05D008661 2.5e-104 382.9 332 60.5
Solyc12g013870.3 Solanum lycopersicum HOM05D002373 ORTHO05D008661 4.2e-104 382.1 332 60.5
PGSC0003DMG400015321 Solanum tuberosum HOM05D002373 ORTHO05D008661 2.1e-103 379.8 332 59.3
MSTRG.12905 Avicennia marina HOM05D002373 ORTHO05D008661 3.5e-103 379.0 329 61.4
vmacro09529 Vaccinium macrocarpon HOM05D002373 ORTHO05D008661 3.5e-103 379.0 366 58.5
Manes.03G109500 Manihot esculenta HOM05D002373 ORTHO05D008661 4.6e-103 378.6 236 77.1
EL10Ac4g08187 Beta vulgaris HOM05D002373 ORTHO05D008661 1.8e-102 376.7 289 65.7
Aqoxy1G02390 Aquilegia oxysepala HOM05D002373 ORTHO05D008661 5.1e-102 375.2 296 63.2
Zm00001eb153060 Zea mays HOM05D002373 ORTHO05D008661 4.8e-100 368.6 255 69.4
SGA_v2.0_scaffold70G23676 Striga asiatica HOM05D002373 ORTHO05D008661 6.3e-100 368.2 349 57.9
Os01g0747700 Oryza sativa ssp. japonica HOM05D002373 ORTHO05D008661 1.1e-99 367.5 249 69.5
AUR62019433 Chenopodium quinoa HOM05D002373 ORTHO05D008661 1.2e-98 364.0 301 62.8
Phvul.005G072600 Phaseolus vulgaris HOM05D002373 ORTHO05D008661 4.5e-98 362.1 236 74.6
Hund20000 Selenicereus undatus HOM05D002373 ORTHO05D008661 1.0e-97 360.9 284 65.5
Nitab4.5_0009292g0020 Nicotiana tabacum HOM05D002373 ORTHO05D008661 2.9e-97 359.4 309 60.5
Ah.06g184370 Amaranthus hybridus HOM05D002373 ORTHO05D008661 3.8e-97 359.0 271 66.4
CDE02G2303 Ceratophyllum demersum HOM05D002373 ORTHO05D008661 1.1e-96 357.5 233 71.7
Peaxi162Scf00000g03511 Petunia axillaris HOM05D002373 ORTHO05D008661 1.9e-96 356.7 310 60.0
AUR62039201 Chenopodium quinoa HOM05D002373 ORTHO05D008661 2.5e-96 356.3 301 61.8
HPP92_024439 Vanilla planifolia HOM05D002373 ORTHO05D008661 7.2e-96 354.8 251 68.5
TWI38G1988 Tripterygium wilfordii HOM05D002373 ORTHO05D008661 9.3e-96 354.4 275 67.6
FAN21G4050 Fragaria x ananassa HOM05D002373 ORTHO05D008661 4.3e-93 345.5 211 77.7
Gorai.013G170800 Gossypium raimondii HOM05D002373 ORTHO05D008661 8.2e-92 341.3 211 77.3
ATR0737G132 Amborella trichopoda HOM05D002373 ORTHO05D008661 5.3e-91 338.6 249 65.5
unitig_26.g9527 Utricularia gibba HOM05D002373 ORTHO05D008661 1.7e-89 333.6 260 63.8
Sc03g0010080 Simmondsia chinensis HOM05D002373 ORTHO05D008661 9.4e-88 327.8 282 60.3
Rhsim04G0021500 Rhododendron simsii HOM05D002373 ORTHO05D008661 2.3e-86 323.2 292 60.6
PSO541G6350 Papaver somniferum HOM05D002373 ORTHO05D008661 6.9e-83 311.6 220 67.7
Nitab4.5_0000332g0080 Nicotiana tabacum HOM05D002373 ORTHO05D008661 9.1e-83 311.2 309 55.0
Oeu060559.2 Olea europaea HOM05D002373 ORTHO05D008661 1.5e-82 310.5 391 47.1
Pp3c20_21790 Physcomitrium patens HOM05D002373 ORTHO05D008661 9.1e-75 284.6 260 54.6
Gorai.013G169000 Gossypium raimondii HOM05D002373 ORTHO05D008661 2.3e-70 270.0 227 63.0
AagrBONN_evm.TU.Sc2ySwM_344.3401 Anthoceros agrestis HOM05D002373 ORTHO05D008661 8.2e-68 261.5 260 49.6
SMO367G1013 Selaginella moellendorffii HOM05D002373 ORTHO05D008661 5.3e-67 258.8 243 52.7
Glyma.13G276400 Glycine max HOM05D002373 ORTHO05D008661 1.2e-66 257.7 249 58.2
Mapoly0051s0038 Marchantia polymorpha HOM05D002373 ORTHO05D008661 1.0e-65 254.6 259 48.3
Cre12.g502950 Chlamydomonas reinhardtii HOM05D002373 ORTHO05D008661 2.6e-61 240.0 272 46.0
CDE08G0691 Ceratophyllum demersum HOM05D002373 ORTHO05D008661 1.3e-57 227.6 148 71.6
CSS0025404 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 7.0e-51 205.3 129 76.0
MCO14G219 Micromonas commoda HOM05D002373 ORTHO05D008661 2.3e-49 200.3 265 40.0
Thecc.07G090900 Theobroma cacao HOM05D002373 ORTHO05D008661 3.0e-41 173.3 105 79.0
Gohir.D13G152082 Gossypium hirsutum HOM05D002373 ORTHO05D008661 4.7e-31 139.4 87 80.5
Gorai.013G170900 Gossypium raimondii HOM05D002373 ORTHO05D008661 1.4e-30 137.9 87 80.5
Gohir.A13G147066 Gossypium hirsutum HOM05D002373 ORTHO05D008661 1.2e-26 124.8 81 77.8
CSS0007754 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 2.9e-20 103.6 65 75.4
A01p26780 Brassica napus HOM05D002373 ORTHO05D008661 5.4e-19 99.4 72 63.9
CSS0007182 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 9.2e-19 98.6 64 71.9
Atru.chr2.2601 Acer truncatum HOM05D002373 ORTHO05D013107 4.8e-07 59.7 37 70.3
BcaC05g28656 Brassica carinata HOM05D022203 ORTHO05D024331 4.8e-07 59.7 41 65.9
MD11G1248800 Malus domestica HOM05D002373 ORTHO05D008661 1.4e-06 58.2 157 36.3


User provided reference genes

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