Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 1.1e-94 350.9 352 100.0
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 2.7e-80 303.1 172 89.5
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 1.3e-79 300.8 173 87.3
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 2.3e-79 300.1 173 86.1
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 1.1e-78 297.7 171 88.3
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 1.9e-78 297.0 173 87.9
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 3.3e-78 296.2 171 86.5
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 4.3e-78 295.8 173 85.0
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 4.3e-78 295.8 173 85.0
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 4.3e-78 295.8 173 85.0
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 2.2e-77 293.5 173 84.4
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 2.2e-77 293.5 173 85.0
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 2.8e-77 293.1 173 84.4
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 2.8e-77 293.1 171 84.8
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 2.8e-77 293.1 173 85.0
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 4.8e-77 292.4 171 86.5
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 4.8e-77 292.4 171 85.4
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 6.3e-77 292.0 173 85.0
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 1.1e-76 291.2 173 83.8
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 1.1e-76 291.2 172 84.3
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 1.8e-76 290.4 173 85.0
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 2.4e-76 290.0 173 83.8
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 3.1e-76 289.7 173 82.7
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 4.1e-76 289.3 171 86.0
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 6.9e-76 288.5 173 82.7
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 1.2e-75 287.7 169 85.2
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 1.2e-75 287.7 173 82.1
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 1.5e-75 287.3 173 82.7
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 1.5e-75 287.3 173 82.7
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 1.5e-75 287.3 173 82.7
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 1.5e-75 287.3 172 83.1
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 2.0e-75 287.0 168 85.7
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 2.0e-75 287.0 173 84.4
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 4.5e-75 285.8 172 82.6
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 7.7e-75 285.0 173 83.2
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 7.7e-75 285.0 169 84.6
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 7.7e-75 285.0 168 85.7
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 7.7e-75 285.0 172 85.5
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.0e-74 284.6 168 85.1
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 2.9e-74 283.1 171 83.6
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 2.9e-74 283.1 173 82.1
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 1.9e-73 280.4 173 80.9
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 3.2e-73 279.6 173 80.3
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 5.5e-73 278.9 170 84.1
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 7.2e-73 278.5 171 81.9
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 9.4e-73 278.1 167 83.2
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 1.6e-72 277.3 173 81.5
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 1.6e-72 277.3 171 82.5
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 2.1e-72 276.9 173 78.0
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 4.6e-72 275.8 171 83.6
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 9.7e-70 268.1 171 77.8
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 1.7e-69 267.3 220 65.9
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 1.7e-69 267.3 173 78.0
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 2.2e-69 266.9 169 78.1
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 2.8e-69 266.5 173 79.2
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 6.3e-69 265.4 173 77.5
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 6.3e-69 265.4 170 79.4
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 6.3e-69 265.4 170 79.4
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 1.4e-68 264.2 173 75.7
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 1.8e-68 263.8 173 75.1
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 1.8e-68 263.8 171 78.4
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 3.1e-68 263.1 170 78.8
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 9.1e-68 261.5 171 77.8
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 5.9e-67 258.8 173 74.0
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 7.7e-67 258.5 173 74.0
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 7.7e-67 258.5 173 74.0
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 7.7e-67 258.5 173 74.0
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 7.7e-67 258.5 173 74.0
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 7.7e-67 258.5 173 74.0
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 7.7e-67 258.5 173 74.0
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 1.3e-66 257.7 205 67.8
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 5.0e-66 255.8 173 74.6
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 1.4e-65 254.2 171 77.2
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 2.5e-65 253.4 173 74.0
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 2.5e-65 253.4 173 74.0
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 1.0e-63 248.1 201 64.2
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 2.3e-63 246.9 173 72.8
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 1.1e-62 244.6 169 74.6
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 2.0e-62 243.8 148 83.8
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 1.7e-61 240.7 166 75.3
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 2.8e-61 240.0 156 76.3
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 3.7e-61 239.6 166 71.1
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 6.3e-61 238.8 168 74.4
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 1.4e-60 237.7 198 64.6
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 2.4e-60 236.9 149 83.9
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 1.6e-59 234.2 192 66.1
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 2.0e-59 233.8 149 80.5
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 2.0e-59 233.8 170 71.8
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 2.9e-58 229.9 166 68.7
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 1.5e-57 227.6 149 79.2
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 2.5e-57 226.9 151 79.5
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 8.0e-56 221.9 169 66.9
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 5.2e-55 219.2 156 73.7
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 1.4e-52 211.1 174 62.6
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 3.5e-51 206.5 168 63.7
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 3.6e-48 196.4 131 75.6
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 8.0e-48 195.3 149 67.8
FAN16G2347 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.7e-45 187.6 118 83.1
Actinidia12817 Actinidia chinensis HOM05D000300 ORTHO05D008505 1.3e-34 151.4 73 94.5
AUR62029376 Chenopodium quinoa HOM05D000300 ORTHO05D008505 5.2e-31 139.4 107 69.2
AUR62034261 Chenopodium quinoa HOM05D000300 ORTHO05D008505 5.2e-31 139.4 107 69.2
COL.COLO4_09413 Corchorus olitorius HOM05D000300 ORTHO05D008505 3.2e-28 130.2 92 78.3
FAN25G2371 Fragaria x ananassa HOM05D000300 ORTHO05D008505 4.1e-28 129.8 65 92.3
MD11G1132100 Malus domestica HOM05D000300 ORTHO05D008505 5.4e-28 129.4 69 85.5
Nn1g04059 Nelumbo nucifera HOM05D000300 ORTHO05D008505 6.6e-26 122.5 95 68.4
EL10Ac4g08146 Beta vulgaris HOM05D000300 ORTHO05D008505 9.5e-25 118.6 124 56.5
Cre03.g176050 Chlamydomonas reinhardtii HOM05D000300 ORTHO05D008505 1.0e-23 115.2 160 42.5
CBR_g12199 Chara braunii HOM05D000300 ORTHO05D008505 1.5e-22 111.3 71 69.0
MCO10G111 Micromonas commoda HOM05D000300 ORTHO05D008505 7.5e-22 109.0 171 36.8
arahy.Tifrunner.gnm1.ann1.MM4FDC Arachis hypogaea HOM05D000300 ORTHO05D008505 2.0e-19 100.9 79 70.9
GSVIVG01021702001 Vitis vinifera HOM05D000300 ORTHO05D008505 2.0e-19 100.9 66 81.8
GSVIVG01021454001 Vitis vinifera HOM05D000300 ORTHO05D008505 6.6e-18 95.9 77 71.4
TAR626G1261 Trochodendron aralioides HOM05D000300 ORTHO05D008505 2.5e-17 94.0 68 76.5
arahy.Tifrunner.gnm1.ann1.5AH57W Arachis hypogaea HOM05D000300 ORTHO05D008505 2.0e-14 84.3 51 86.3
AL8G13240 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 2.6e-14 84.0 75 60.0
FAN25G3258 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.3e-13 81.6 64 67.2
arahy.Tifrunner.gnm1.ann1.F96EFF Arachis hypogaea HOM05D003444 ORTHO05D008505 2.4e-12 77.4 64 67.2
GSVIVG01014364001 Vitis vinifera HOM05D000300 ORTHO05D008505 5.1e-10 69.7 32 93.8
arahy.Tifrunner.gnm1.ann1.MF7AUF Arachis hypogaea HOM05D003391 ORTHO05D008505 1.9e-09 67.8 39 84.6
arahy.Tifrunner.gnm1.ann1.ZC4B2S Arachis hypogaea HOM05D001903 ORTHO05D001847 8.1e-08 62.4 50 74.0
arahy.Tifrunner.gnm1.ann1.1E0HE3 Arachis hypogaea HOM05D001903 ORTHO05D013215 3.1e-07 60.5 39 79.5
arahy.Tifrunner.gnm1.ann1.VIP1CP Arachis hypogaea HOM05D000058 ORTHO05D008505 6.8e-07 59.3 37 73.0


User provided reference genes

Program Settings