Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 6.3e-163 577.4 296 100.0
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 4.8e-139 498.0 296 85.8
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 4.1e-138 495.0 297 84.2
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 5.4e-138 494.6 293 86.0
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 9.1e-138 493.8 297 84.2
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 2.1e-134 482.6 297 82.2
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 6.8e-133 477.6 298 82.6
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 1.2e-132 476.9 298 82.6
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 2.6e-132 475.7 298 82.2
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 3.4e-132 475.3 296 81.1
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 3.4e-132 475.3 296 81.1
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 1.3e-131 473.4 299 81.3
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 1.7e-131 473.0 297 82.5
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 2.8e-131 472.2 296 81.4
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 4.9e-131 471.5 296 80.7
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 3.1e-130 468.8 296 80.4
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 7.0e-130 467.6 296 81.1
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 1.2e-129 466.8 296 80.7
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 2.0e-129 466.1 296 80.1
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.3e-128 463.4 296 79.4
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.3e-128 462.6 296 79.4
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 3.8e-128 461.8 296 79.4
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 8.6e-128 460.7 296 79.1
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 2.5e-127 459.1 296 79.7
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 4.3e-127 458.4 296 79.7
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 4.3e-127 458.4 296 79.4
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 9.5e-127 457.2 296 79.4
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 9.5e-127 457.2 294 80.3
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 8.0e-126 454.1 296 79.1
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 8.0e-126 454.1 296 78.4
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 1.0e-125 453.8 294 79.3
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.4e-125 453.4 296 79.1
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 1.8e-125 453.0 298 79.2
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 5.2e-125 451.4 298 77.5
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 1.5e-124 449.9 297 78.1
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 4.4e-124 448.4 297 78.5
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 7.5e-124 447.6 298 78.2
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 2.2e-123 446.0 296 77.4
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 2.9e-123 445.7 295 76.9
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 3.7e-123 445.3 299 77.3
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 4.9e-123 444.9 296 76.0
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 6.4e-123 444.5 297 77.1
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 6.4e-123 444.5 297 77.1
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 1.4e-122 443.4 296 76.7
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 1.4e-122 443.4 296 76.4
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 1.4e-122 443.4 297 76.4
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 2.4e-122 442.6 296 76.4
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 3.2e-122 442.2 297 77.4
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 4.1e-122 441.8 292 77.4
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 4.1e-122 441.8 297 77.4
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 5.4e-122 441.4 296 76.4
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 5.4e-122 441.4 298 75.8
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 1.6e-121 439.9 295 76.6
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 1.6e-121 439.9 296 75.7
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 1.6e-121 439.9 299 75.3
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 2.7e-121 439.1 296 76.4
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 2.7e-121 439.1 296 75.7
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 2.7e-121 439.1 296 75.7
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 2.7e-121 439.1 296 75.7
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 3.5e-121 438.7 295 76.3
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 5.9e-121 438.0 295 76.3
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 5.9e-121 438.0 297 76.4
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 7.8e-121 437.6 295 77.3
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 1.0e-120 437.2 295 75.9
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 1.3e-120 436.8 295 77.6
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 1.3e-120 436.8 296 77.0
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 1.7e-120 436.4 295 75.9
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 1.7e-120 436.4 298 76.2
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 3.9e-120 435.3 298 76.2
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 3.9e-120 435.3 297 75.4
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 5.0e-120 434.9 297 74.7
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 6.6e-120 434.5 297 75.8
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 8.6e-120 434.1 295 75.6
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 1.1e-119 433.7 297 75.1
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 1.9e-119 433.0 297 74.7
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 1.9e-119 433.0 297 74.7
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 3.3e-119 432.2 296 75.0
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 9.5e-119 430.6 289 77.5
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 1.2e-118 430.3 297 75.8
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 1.6e-118 429.9 297 74.7
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 2.8e-118 429.1 296 74.0
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 4.7e-118 428.3 290 76.6
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 8.0e-118 427.6 289 76.8
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 1.0e-117 427.2 284 79.2
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 4.0e-117 425.2 289 76.1
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 5.2e-117 424.9 296 75.3
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 5.2e-117 424.9 295 74.9
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 6.8e-117 424.5 296 74.0
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 8.9e-117 424.1 298 73.5
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 8.9e-117 424.1 297 73.7
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 7.5e-116 421.0 297 74.1
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 2.9e-115 419.1 296 73.6
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 2.9e-115 419.1 296 73.6
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 6.4e-115 417.9 296 75.7
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 6.4e-115 417.9 295 73.9
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 2.4e-114 416.0 295 73.9
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 5.4e-114 414.8 295 74.9
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 7.0e-114 414.5 289 74.4
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 3.5e-113 412.1 296 72.6
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 4.6e-113 411.8 300 73.7
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 1.0e-112 410.6 295 71.5
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 1.7e-112 409.8 295 73.6
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 1.7e-112 409.8 298 71.8
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 3.0e-112 409.1 298 73.2
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 5.0e-112 408.3 285 74.0
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 8.6e-112 407.5 298 71.5
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 1.1e-111 407.1 301 74.1
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 2.5e-111 406.0 296 71.6
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 4.3e-111 405.2 296 70.3
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 4.3e-111 405.2 296 70.3
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 4.3e-111 405.2 296 70.6
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 2.8e-110 402.5 300 70.7
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 3.6e-110 402.1 300 70.7
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 4.7e-110 401.7 290 73.4
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 1.8e-109 399.8 303 70.6
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 2.3e-109 399.4 295 70.5
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 8.9e-109 397.5 295 71.2
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 8.9e-109 397.5 291 68.7
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 2.6e-108 396.0 301 68.8
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 3.4e-108 395.6 302 70.2
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 7.5e-108 394.4 297 70.0
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 1.7e-107 393.3 301 69.4
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 1.1e-106 390.6 288 71.5
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 2.4e-106 389.4 296 72.6
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 1.6e-105 386.7 302 67.5
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 6.0e-105 384.8 295 69.2
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 1.0e-104 384.0 297 69.4
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 1.7e-104 383.3 277 72.6
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 6.6e-104 381.3 295 69.8
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 8.6e-104 380.9 308 67.5
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 1.9e-103 379.8 297 69.0
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 9.5e-103 377.5 302 68.2
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 1.2e-102 377.1 294 67.3
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 2.6e-100 369.4 297 67.0
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 9.9e-100 367.5 301 64.1
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 2.2e-99 366.3 297 67.7
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 8.4e-99 364.4 307 66.4
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 1.4e-98 363.6 307 65.8
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 7.1e-98 361.3 305 63.9
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 7.8e-97 357.8 294 63.6
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 6.9e-93 344.7 296 64.9
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 4.2e-90 335.5 267 65.2
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 2.8e-86 322.8 250 68.8
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 4.0e-85 318.9 295 60.3
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 3.0e-80 302.8 285 56.5
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 1.6e-78 297.0 220 72.7
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 5.1e-72 275.4 285 54.0
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 1.9e-71 273.5 273 55.7
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 1.9e-71 273.5 200 75.0
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 8.2e-62 241.5 143 83.9
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 4.5e-60 235.7 273 51.3
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 9.3e-58 228.0 290 48.6
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 8.7e-56 221.5 280 44.6
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 1.0e-51 208.0 152 71.1
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 9.4e-50 201.4 171 64.9
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 1.8e-48 197.2 126 74.6
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 2.7e-41 173.3 151 64.9
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 8.8e-40 168.3 90 95.6
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 3.3e-39 166.4 115 73.0
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 2.0e-36 157.1 113 71.7
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 2.0e-31 140.6 100 73.0
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 2.0e-28 130.6 108 63.9
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 1.3e-22 111.3 336 27.1
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 1.2e-20 104.8 91 67.0
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 4.2e-18 96.3 73 67.1
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 6.1e-17 92.4 72 62.5
PGSC0003DMG400020380 Solanum tuberosum HOM05D005748 ORTHO05D007123 3.7e-06 56.6 152 33.6
A08p28200 Brassica napus HOM05D005748 ORTHO05D007123 4.9e-06 56.2 133 34.6
BraA08t34751Z Brassica rapa HOM05D005748 ORTHO05D007123 4.9e-06 56.2 133 34.6


User provided reference genes

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