Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 7.5e-36 153.3 76 100.0
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 1.9e-18 95.5 47 95.7
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 2.4e-18 95.1 47 93.6
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 3.2e-18 94.7 47 93.6
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 4.1e-18 94.4 47 93.6
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 4.1e-18 94.4 47 93.6
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 4.1e-18 94.4 47 91.5
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 4.1e-18 94.4 47 93.6
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 4.1e-18 94.4 47 93.6
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 4.1e-18 94.4 47 93.6
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 4.1e-18 94.4 47 93.6
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 4.1e-18 94.4 47 93.6
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 4.1e-18 94.4 47 91.5
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 4.1e-18 94.4 47 93.6
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 5.4e-18 94.0 47 91.5
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 5.4e-18 94.0 47 91.5
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 7.1e-18 93.6 47 91.5
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 7.1e-18 93.6 47 91.5
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 9.2e-18 93.2 47 89.4
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 9.2e-18 93.2 47 91.5
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 9.2e-18 93.2 47 89.4
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 9.2e-18 93.2 47 89.4
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 9.2e-18 93.2 47 89.4
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 9.2e-18 93.2 47 89.4
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 9.2e-18 93.2 47 89.4
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 9.2e-18 93.2 47 89.4
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 9.2e-18 93.2 47 89.4
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 9.2e-18 93.2 47 89.4
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 9.2e-18 93.2 47 89.4
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 9.2e-18 93.2 47 89.4
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 9.2e-18 93.2 47 89.4
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 9.2e-18 93.2 47 91.5
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 9.2e-18 93.2 47 91.5
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 9.2e-18 93.2 47 89.4
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 9.2e-18 93.2 47 91.5
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 9.2e-18 93.2 47 89.4
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 9.2e-18 93.2 47 91.5
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 9.2e-18 93.2 47 91.5
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 9.2e-18 93.2 47 89.4
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 9.2e-18 93.2 47 91.5
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 9.2e-18 93.2 47 91.5
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 1.2e-17 92.8 47 91.5
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 1.2e-17 92.8 47 91.5
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.2e-17 92.8 47 91.5
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.2e-17 92.8 47 91.5
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.2e-17 92.8 47 91.5
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 1.2e-17 92.8 47 91.5
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 1.6e-17 92.4 47 91.5
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 1.6e-17 92.4 47 91.5
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 1.6e-17 92.4 47 91.5
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 1.6e-17 92.4 47 91.5
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.6e-17 92.4 47 89.4
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 2.7e-17 91.7 47 87.2
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 2.7e-17 91.7 47 87.2
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 2.7e-17 91.7 46 91.3
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 2.7e-17 91.7 47 89.4
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 2.7e-17 91.7 47 89.4
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 3.5e-17 91.3 47 89.4
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 3.5e-17 91.3 47 89.4
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 3.5e-17 91.3 46 89.1
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 3.5e-17 91.3 47 89.4
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 3.5e-17 91.3 47 91.5
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 3.5e-17 91.3 46 91.3
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 3.5e-17 91.3 46 91.3
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 3.5e-17 91.3 46 91.3
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 4.6e-17 90.9 47 89.4
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 4.6e-17 90.9 46 89.1
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 4.6e-17 90.9 47 89.4
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 4.6e-17 90.9 47 89.4
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 7.8e-17 90.1 50 84.0
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 7.8e-17 90.1 47 87.2
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 7.8e-17 90.1 47 89.4
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 7.8e-17 90.1 47 89.4
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 7.8e-17 90.1 47 89.4
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 7.8e-17 90.1 46 89.1
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 1.0e-16 89.7 47 85.1
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 1.0e-16 89.7 47 89.4
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 1.3e-16 89.4 47 85.1
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 1.3e-16 89.4 47 85.1
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 1.7e-16 89.0 47 87.2
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 1.7e-16 89.0 47 89.4
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 1.7e-16 89.0 46 89.1
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 1.7e-16 89.0 47 89.4
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 1.7e-16 89.0 46 87.0
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 1.7e-16 89.0 46 87.0
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 2.3e-16 88.6 47 89.4
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 2.3e-16 88.6 47 89.4
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 2.3e-16 88.6 47 87.2
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 2.3e-16 88.6 47 89.4
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 2.3e-16 88.6 46 84.8
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 2.3e-16 88.6 47 89.4
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 2.3e-16 88.6 57 77.2
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 3.0e-16 88.2 47 87.2
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 3.9e-16 87.8 46 87.0
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 3.9e-16 87.8 46 87.0
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 8.6e-16 86.7 47 87.2
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 8.6e-16 86.7 46 84.8
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 8.6e-16 86.7 46 84.8
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 8.6e-16 86.7 47 89.4
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 8.6e-16 86.7 47 89.4
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 1.1e-15 86.3 46 84.8
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 1.1e-15 86.3 46 84.8
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.1e-15 86.3 46 84.8
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 1.1e-15 86.3 47 85.1
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 1.5e-15 85.9 46 84.8
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 1.5e-15 85.9 46 84.8
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 1.2e-14 82.8 46 80.4
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 1.2e-14 82.8 46 80.4
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 1.2e-14 82.8 46 80.4
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 3.6e-14 81.3 46 78.3
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.8e-13 79.0 46 76.1
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 2.0e-12 75.5 47 70.2
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 2.0e-12 75.5 46 71.7
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 3.4e-12 74.7 47 72.3
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 4.4e-12 74.3 46 67.4
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 7.6e-12 73.6 47 72.3
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 1.3e-11 72.8 42 81.0
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 1.3e-11 72.8 36 91.7
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 1.7e-11 72.4 42 81.0
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 2.2e-11 72.0 47 68.1
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 2.9e-11 71.6 38 81.6
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.9e-11 71.6 41 80.5
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 2.9e-11 71.6 38 84.2
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 2.9e-11 71.6 41 78.0
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 2.9e-11 71.6 47 68.1
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 3.8e-11 71.2 36 86.1
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 3.8e-11 71.2 36 86.1
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 6.4e-11 70.5 43 72.1
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 6.4e-11 70.5 35 91.4
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 1.1e-10 69.7 43 74.4
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 1.1e-10 69.7 38 81.6
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 1.4e-10 69.3 36 83.3
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 1.9e-10 68.9 36 83.3
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 1.9e-10 68.9 41 80.5
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 2.4e-10 68.6 36 83.3
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 3.2e-10 68.2 57 63.2
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 4.1e-10 67.8 40 75.0
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 5.4e-10 67.4 37 83.8
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 2.7e-09 65.1 41 78.0
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 1.0e-08 63.2 49 67.3
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 3.9e-08 61.2 41 68.3
Cc05_g01000 Coffea canephora HOM05D004281 ORTHO05D004839 8.7e-08 60.1 32 87.5
Cc00_g07230 Coffea canephora HOM05D004281 ORTHO05D004839 7.3e-07 57.0 40 77.5
Cc00_g07240 Coffea canephora HOM05D004281 ORTHO05D004839 7.3e-07 57.0 40 77.5
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 2.8e-06 55.1 38 65.8
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 3.6e-06 54.7 41 63.4


User provided reference genes

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