Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p017718 Quercus lobata HOM05D007962 ORTHO05D009990 8.0e-248 860.1 488 100.0
Haze_09532 Corylus avellana HOM05D007962 ORTHO05D009990 5.5e-140 501.9 488 62.1
Cfa020503 Carpinus fangiana HOM05D007962 ORTHO05D009990 1.0e-138 497.7 481 62.0
CiPaw.11G176900 Carya illinoinensis HOM05D007962 ORTHO05D009990 2.9e-112 409.8 482 57.7
GSVIVG01014440001 Vitis vinifera HOM05D007962 ORTHO05D009990 1.6e-99 367.5 484 50.0
RcHm_v2.0_Chr5g0036061 Rosa chinensis HOM05D007962 ORTHO05D009990 2.7e-94 350.1 486 49.6
MD03G1218200 Malus domestica HOM05D007962 ORTHO05D009990 1.3e-93 347.8 469 50.1
Dinv22362 Davidia involucrata HOM05D007962 ORTHO05D009990 1.9e-87 327.4 477 47.6
Duzib213G0567 Durio zibethinus HOM05D007962 ORTHO05D009990 1.3e-85 321.2 515 44.9
CANSAT11G1510 Cannabis sativa HOM05D007962 ORTHO05D009990 9.6e-84 315.1 465 48.4
FAN11G3981 Fragaria x ananassa HOM05D007962 ORTHO05D009990 3.6e-83 313.2 481 47.2
Thecc.07G070800 Theobroma cacao HOM05D007962 ORTHO05D009990 8.1e-83 312.0 484 46.5
Potri.011G126600 Populus trichocarpa HOM05D007962 ORTHO05D009990 5.3e-82 309.3 441 47.6
Potri.001G407200 Populus trichocarpa HOM05D007962 ORTHO05D009990 2.0e-81 307.4 441 47.6
FAN16G1594 Fragaria x ananassa HOM05D007962 ORTHO05D009990 2.6e-81 307.0 473 47.6
FAN25G2958 Fragaria x ananassa HOM05D007962 ORTHO05D009990 2.6e-81 307.0 475 46.9
Sabra11G0110900 Salix brachista HOM05D007962 ORTHO05D009990 4.5e-81 306.2 441 47.6
Manes.15G083000 Manihot esculenta HOM05D007962 ORTHO05D009990 5.8e-81 305.8 486 47.3
COL.COLO4_09484 Corchorus olitorius HOM05D007962 ORTHO05D009990 1.7e-80 304.3 490 45.3
Gorai.013G165900 Gossypium raimondii HOM05D007962 ORTHO05D009990 8.4e-80 302.0 472 48.7
FAN21G0493 Fragaria x ananassa HOM05D007962 ORTHO05D009990 6.0e-78 295.8 475 46.9
Gohir.A13G143400 Gossypium hirsutum HOM05D007962 ORTHO05D009990 2.3e-77 293.9 456 46.3
Duzib170G0916 Durio zibethinus HOM05D007962 ORTHO05D009990 3.9e-77 293.1 484 44.6
TAR627G0526 Trochodendron aralioides HOM05D007962 ORTHO05D009990 1.7e-72 277.7 477 44.0
Dinv08346 Davidia involucrata HOM05D007962 ORTHO05D009990 5.5e-71 272.7 394 45.7
TWI39G0726 Tripterygium wilfordii HOM05D007962 ORTHO05D009990 1.0e-69 268.5 508 38.8
Cpa.g.sc80.118 Carica papaya HOM05D007962 ORTHO05D009990 1.1e-68 265.0 467 42.6
Lj1A853T83 Lonicera japonica HOM05D007962 ORTHO05D009990 2.5e-68 263.8 481 43.7
PGR031G2376 Punica granatum HOM05D007962 ORTHO05D009990 1.6e-67 261.2 463 42.8
Actinidia18741 Actinidia chinensis HOM05D007962 ORTHO05D009990 4.8e-67 259.6 478 45.8
Actinidia35282 Actinidia chinensis HOM05D007962 ORTHO05D009990 4.9e-64 249.6 477 41.3
Gohir.D13G148100 Gossypium hirsutum HOM05D007962 ORTHO05D009990 6.5e-64 249.2 372 49.5
vmacro09563 Vaccinium macrocarpon HOM05D007962 ORTHO05D009990 6.5e-64 249.2 476 41.4
Atru.chr2.2909 Acer truncatum HOM05D007962 ORTHO05D009990 1.9e-63 247.7 559 40.8
MD11G1236000 Malus domestica HOM05D007962 ORTHO05D009990 1.2e-62 245.0 395 46.8
Ciclev10010584m.g Citrus clementina HOM05D007962 ORTHO05D009990 3.8e-56 223.4 460 39.8
RhsimUnG0258400 Rhododendron simsii HOM05D007962 ORTHO05D009990 1.9e-55 221.1 475 40.2
Oeu006765.1 Olea europaea HOM05D007962 ORTHO05D009990 7.2e-55 219.2 455 42.2
Nitab4.5_0001320g0060 Nicotiana tabacum HOM05D007962 ORTHO05D009990 2.1e-54 217.6 453 39.3
CSS0037131 Camellia sinensis var. sinensis HOM05D007962 ORTHO05D009990 4.6e-54 216.5 476 41.2
Eucgr.F03357 Eucalyptus grandis HOM05D007962 ORTHO05D009990 6.1e-54 216.1 474 40.7
arahy.Tifrunner.gnm1.ann1.680K8M Arachis hypogaea HOM05D007962 ORTHO05D009990 1.8e-53 214.5 503 35.8
Lalb_Chr19g0134511 Lupinus albus HOM05D007962 ORTHO05D009990 3.4e-49 200.3 607 32.6
Nitab4.5_0000207g0280 Nicotiana tabacum HOM05D007962 ORTHO05D009990 2.2e-48 197.6 413 40.2
arahy.Tifrunner.gnm1.ann1.NS3ZH3 Arachis hypogaea HOM05D007962 ORTHO05D009990 1.1e-47 195.3 527 32.3
Phvul.011G137100 Phaseolus vulgaris HOM05D007962 ORTHO05D009990 4.6e-46 189.9 496 35.5
Glyma.06G271400 Glycine max HOM05D007962 ORTHO05D009990 6.3e-43 179.5 586 32.3
Lj3g0007855 Lotus japonicus HOM05D007962 ORTHO05D009990 1.8e-42 177.9 362 40.3
FvH4_3g21030 Fragaria vesca HOM05D007962 ORTHO05D009990 4.1e-42 176.8 359 42.1
VMungo1127G0274 Vigna mungo HOM05D007962 ORTHO05D009990 2.6e-41 174.1 438 35.2
Nn1g06763 Nelumbo nucifera HOM05D007962 ORTHO05D009990 6.5e-40 169.5 497 32.4
MELO3C016557.2 Cucumis melo HOM05D007962 ORTHO05D009990 8.5e-40 169.1 450 39.3
ClCG10G006460 Citrullus lanatus HOM05D007962 ORTHO05D009990 1.4e-39 168.3 464 35.6
CsaV3_3G005940 Cucumis sativus L. HOM05D007962 ORTHO05D009990 1.0e-37 162.2 436 36.2
HanXRQChr03g0077201 Helianthus annuus HOM05D007962 ORTHO05D009990 5.3e-34 149.8 478 32.8
Sabra16G0268600 Salix brachista HOM05D007962 ORTHO05D009990 2.2e-32 144.4 465 31.8
PSO210G4006 Papaver somniferum HOM05D007962 ORTHO05D009990 2.5e-31 141.0 420 36.4
Psat4g163880 Pisum sativum HOM05D007962 ORTHO05D009990 2.1e-30 137.9 500 31.8
PSO832G2030 Papaver somniferum HOM05D007962 ORTHO05D009990 2.7e-30 137.5 430 38.1
Sc16g0006740 Simmondsia chinensis HOM05D007962 ORTHO05D009990 6.1e-30 136.3 290 40.0
MBI02_g06003_MAGBIO Magnolia biondii HOM05D007962 ORTHO05D009990 5.2e-29 133.3 467 33.2
MSTRG.15202 Avicennia marina HOM05D007962 ORTHO05D009990 2.0e-28 131.3 441 30.4
Aqoxy1G03880 Aquilegia oxysepala HOM05D007962 ORTHO05D009990 9.7e-28 129.0 545 31.4
Hma1.2p1_1176F.1_g264250 Hydrangea macrophylla HOM05D007962 ORTHO05D009990 1.3e-27 128.6 366 36.6
Hma1.2p1_1176F.1_g264255 Hydrangea macrophylla HOM05D007962 ORTHO05D009990 1.3e-27 128.6 366 36.6
Medtr8g464490 Medicago truncatula HOM05D007962 ORTHO05D009990 1.3e-27 128.6 494 35.0
EL10Ac4g08053 Beta vulgaris HOM05D007962 ORTHO05D009990 2.8e-27 127.5 537 29.2
Sopen10g002730 Solanum pennellii HOM05D007962 ORTHO05D009990 3.7e-27 127.1 361 33.8
TPR.G34588 Trifolium pratense HOM05D007962 ORTHO05D009990 4.8e-27 126.7 500 32.0
Migut.M01857 Erythranthe guttata HOM05D007962 ORTHO05D009990 4.2e-23 113.6 491 29.9
Ah.06g183570 Amaranthus hybridus HOM05D007962 ORTHO05D009990 3.0e-21 107.5 283 37.5
AUR62015596 Chenopodium quinoa HOM05D007962 ORTHO05D009990 1.2e-20 105.5 492 29.1
AUR62029307 Chenopodium quinoa HOM05D007962 ORTHO05D009990 9.8e-20 102.4 508 28.1
ECA240G4716 Erigeron canadensis HOM05D000200 ORTHO05D001546 6.3e-19 99.8 450 31.6
Sed0012704 Sechium edule HOM05D007962 ORTHO05D009990 3.1e-18 97.4 429 32.9
Lsat_1_v5_gn_9_95621 Lactuca sativa HOM05D007962 ORTHO05D009990 9.1e-18 95.9 285 33.0
HanXRQChr13g0393921 Helianthus annuus HOM05D003190 ORTHO05D009990 1.5e-15 88.6 100 47.0
CDE11G0480 Ceratophyllum demersum HOM05D063389 ORTHO05D009990 2.3e-08 64.7 454 25.1
SEGI_13433 Sequoiadendron giganteum HOM05D007962 ORTHO05D009990 6.6e-08 63.2 92 43.5
AagrBONN_evm.TU.Sc2ySwM_228.932 Anthoceros agrestis HOM05D020562 ORTHO05D009990 7.3e-07 59.7 46 56.5


User provided reference genes

Program Settings