Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p014094 Quercus lobata HOM05D006009 ORTHO05D007389 6.5e-54 213.8 105 100.0
QL02p103325 Quercus lobata HOM05D006009 ORTHO05D007389 9.7e-42 173.3 105 85.7
Duzib160G0440 Durio zibethinus HOM05D006009 ORTHO05D007389 1.1e-26 123.2 106 64.2
Manes.10G106700 Manihot esculenta HOM05D006009 ORTHO05D007389 9.7e-26 120.2 97 66.0
Haze_09985 Corylus avellana HOM05D006009 ORTHO05D007389 1.7e-25 119.4 105 64.8
Gohir.A06G144400 Gossypium hirsutum HOM05D006009 ORTHO05D007389 2.2e-25 119.0 106 61.3
COL.COLO4_31132 Corchorus olitorius HOM05D006009 ORTHO05D007389 2.8e-25 118.6 106 63.2
Gohir.D06G150100 Gossypium hirsutum HOM05D006009 ORTHO05D007389 8.2e-25 117.1 106 60.4
Cfa004445 Carpinus fangiana HOM05D006009 ORTHO05D007389 1.4e-24 116.3 105 63.8
Ciclev10000419m.g Citrus clementina HOM05D006009 ORTHO05D007389 5.3e-24 114.4 107 60.7
Manes.10G107000 Manihot esculenta HOM05D006009 ORTHO05D007389 5.3e-24 114.4 97 63.9
Gorai.010G175200 Gossypium raimondii HOM05D006009 ORTHO05D007389 7.0e-24 114.0 107 60.7
Thecc.06G017900 Theobroma cacao HOM05D006009 ORTHO05D007389 2.7e-23 112.1 106 60.4
Thhalv10012797m.g Eutrema salsugineum HOM05D006009 ORTHO05D007389 5.5e-21 104.4 97 55.7
Cpa.g.sc173.20 Carica papaya HOM05D006009 ORTHO05D007389 9.4e-21 103.6 100 57.0
Dinv29632 Davidia involucrata HOM05D006009 ORTHO05D007389 1.2e-20 103.2 104 53.8
TAR628G0644 Trochodendron aralioides HOM05D006009 ORTHO05D007389 2.1e-20 102.4 104 57.7
CSS0016468 Camellia sinensis var. sinensis HOM05D006009 ORTHO05D007389 2.7e-20 102.1 95 54.7
Eucgr.I02796 Eucalyptus grandis HOM05D006009 ORTHO05D007389 8.0e-20 100.5 107 53.3
Hma1.2p1_0052F.1_g030000 Hydrangea macrophylla HOM05D006009 ORTHO05D007389 8.0e-20 100.5 104 54.8
GSVIVG01023148001 Vitis vinifera HOM05D006009 ORTHO05D007389 1.0e-19 100.1 95 55.8
CsaV3_5G037180 Cucumis sativus L. HOM05D006009 ORTHO05D007389 2.3e-19 99.0 110 51.8
Sp6g11340 Schrenkiella parvula HOM05D006009 ORTHO05D007389 2.3e-19 99.0 97 53.6
MBI03_g05191_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 3.0e-19 98.6 96 55.2
Atru.chr6.240 Acer truncatum HOM05D006009 ORTHO05D007389 6.8e-19 97.4 110 50.9
Actinidia00150 Actinidia chinensis HOM05D006009 ORTHO05D007389 6.8e-19 97.4 95 53.7
MELO3C022930.2 Cucumis melo HOM05D006009 ORTHO05D007389 6.8e-19 97.4 110 51.8
Lj5C283T7 Lonicera japonica HOM05D006009 ORTHO05D007389 6.8e-19 97.4 104 51.9
Sc03g0005770 Simmondsia chinensis HOM05D006009 ORTHO05D007389 8.8e-19 97.1 96 57.3
SGA_v2.0_scaffold131G34411 Striga asiatica HOM05D006009 ORTHO05D007389 1.2e-18 96.7 104 50.0
PGR142G3497 Punica granatum HOM05D006009 ORTHO05D007389 1.5e-18 96.3 95 56.8
ClCG11G000290 Citrullus lanatus HOM05D006009 ORTHO05D007389 3.4e-18 95.1 100 54.0
THA.LOC104806651 Tarenaya hassleriana HOM05D006009 ORTHO05D007389 3.4e-18 95.1 102 53.9
BcaB08g35360 Brassica carinata HOM05D006009 ORTHO05D007389 4.4e-18 94.7 95 49.5
BcaC04g20834 Brassica carinata HOM05D006009 ORTHO05D007389 9.8e-18 93.6 95 51.6
CiPaw.05G001600 Carya illinoinensis HOM05D006009 ORTHO05D007389 9.8e-18 93.6 95 55.8
Carub.0008s0974 Capsella rubella HOM05D006009 ORTHO05D007389 1.3e-17 93.2 99 54.5
Medtr4g134640 Medicago truncatula HOM05D006009 ORTHO05D007389 1.3e-17 93.2 96 56.2
AL8G23820 Arabidopsis lyrata HOM05D006009 ORTHO05D007389 2.8e-17 92.0 99 54.5
Aa31sc62G20 Aethionema arabicum HOM05D006009 ORTHO05D007389 3.7e-17 91.7 96 54.2
C09p38660 Brassica napus HOM05D006009 ORTHO05D007389 4.8e-17 91.3 96 52.1
BolC9t56722H Brassica oleracea HOM05D006009 ORTHO05D007389 4.8e-17 91.3 96 52.1
FvH4_5g27851 Fragaria vesca HOM05D006009 ORTHO05D007389 4.8e-17 91.3 106 51.9
Psat4g001000 Pisum sativum HOM05D006009 ORTHO05D007389 4.8e-17 91.3 106 50.9
RcHm_v2.0_Chr7g0219751 Rosa chinensis HOM05D006009 ORTHO05D007389 4.8e-17 91.3 106 52.8
A10p08680 Brassica napus HOM05D006009 ORTHO05D007389 1.1e-16 90.1 96 51.0
BraSC37t46134Z Brassica rapa HOM05D006009 ORTHO05D007389 1.1e-16 90.1 96 51.0
Nitab4.5_0002261g0040 Nicotiana tabacum HOM05D006009 ORTHO05D007389 1.1e-16 90.1 107 49.5
Ah.03g136790 Amaranthus hybridus HOM05D006009 ORTHO05D007389 1.4e-16 89.7 104 49.0
Cc02_g23590 Coffea canephora HOM05D006009 ORTHO05D007389 2.4e-16 89.0 103 47.6
Rhsim11G0117900 Rhododendron simsii HOM05D006009 ORTHO05D007389 2.4e-16 89.0 105 47.6
CARHR258850 Cardamine hirsuta HOM05D006009 ORTHO05D007389 3.1e-16 88.6 97 52.6
Solyc01g103040.4 Solanum lycopersicum HOM05D006009 ORTHO05D007389 7.0e-16 87.4 104 45.2
Sopen01g045450 Solanum pennellii HOM05D006009 ORTHO05D007389 7.0e-16 87.4 104 45.2
CANSAT01G0444 Cannabis sativa HOM05D006009 ORTHO05D007389 9.1e-16 87.0 113 46.9
DCAR_001725 Daucus carota HOM05D006009 ORTHO05D007389 1.2e-15 86.7 104 48.1
Ca_13530_v3 Cicer arietinum L. HOM05D006009 ORTHO05D007389 1.6e-15 86.3 105 48.6
FAN08G0569 Fragaria x ananassa HOM05D006009 ORTHO05D007389 1.6e-15 86.3 106 50.0
TPR.G5949 Trifolium pratense HOM05D006009 ORTHO05D007389 1.6e-15 86.3 105 50.5
AUR62042641 Chenopodium quinoa HOM05D006009 ORTHO05D007389 2.0e-15 85.9 90 53.3
Nn5g27199 Nelumbo nucifera HOM05D006009 ORTHO05D007389 2.0e-15 85.9 93 50.5
CAN.G855.51 Capsicum annuum HOM05D006009 ORTHO05D007389 3.5e-15 85.1 107 48.6
Lj4g0014586 Lotus japonicus HOM05D006009 ORTHO05D007389 4.5e-15 84.7 99 49.5
Oeu028483.1 Olea europaea HOM05D006009 ORTHO05D007389 5.9e-15 84.3 101 48.5
TWI59G1011 Tripterygium wilfordii HOM05D006009 ORTHO05D007389 7.7e-15 84.0 75 57.3
AT5G49880 Arabidopsis thaliana HOM05D006009 ORTHO05D007389 1.0e-14 83.6 99 51.5
AUR62032470 Chenopodium quinoa HOM05D006009 ORTHO05D007389 1.7e-14 82.8 90 53.3
Sabra03G0000300 Salix brachista HOM05D006009 ORTHO05D007389 3.8e-14 81.6 100 49.0
HanXRQChr10g0301411 Helianthus annuus HOM05D006009 ORTHO05D007389 5.0e-14 81.3 106 47.2
Lsat_1_v5_gn_5_104280 Lactuca sativa HOM05D006009 ORTHO05D007389 5.0e-14 81.3 107 48.6
Phvul.003G076200 Phaseolus vulgaris HOM05D006009 ORTHO05D007389 6.5e-14 80.9 105 45.7
EL10Ac6g13997 Beta vulgaris HOM05D006009 ORTHO05D007389 8.5e-14 80.5 94 48.9
Sed0013076 Sechium edule HOM05D006009 ORTHO05D007389 1.5e-13 79.7 95 46.3
Potri.003G000900 Populus trichocarpa HOM05D006009 ORTHO05D007389 1.9e-13 79.3 99 51.5
ECA234G2369 Erigeron canadensis HOM05D006009 ORTHO05D007389 3.2e-13 78.6 107 46.7
Potri.004G228900 Populus trichocarpa HOM05D006009 ORTHO05D007389 5.5e-13 77.8 99 50.5
Migut.B00722 Erythranthe guttata HOM05D006009 ORTHO05D007389 7.2e-13 77.4 103 44.7
Glyma.07G272700 Glycine max HOM05D006009 ORTHO05D007389 7.2e-13 77.4 105 46.7
Glyma.17G001700 Glycine max HOM05D006009 ORTHO05D007389 7.2e-13 77.4 104 45.2
MSTRG.16468 Avicennia marina HOM05D006009 ORTHO05D007389 9.5e-13 77.0 73 54.8
Nitab4.5_0005110g0010 Nicotiana tabacum HOM05D006009 ORTHO05D007389 9.5e-13 77.0 125 41.6
FAN18G4220 Fragaria x ananassa HOM05D006009 ORTHO05D007389 1.2e-12 76.6 104 47.1
Lalb_Chr12g0195841 Lupinus albus HOM05D006009 ORTHO05D007389 2.1e-12 75.9 96 43.8
MD15G1442900 Malus domestica HOM05D006009 ORTHO05D007389 2.7e-12 75.5 100 45.0
Os01g0877300 Oryza sativa ssp. japonica HOM05D006009 ORTHO05D007389 1.0e-11 73.6 99 42.4
PSO017G1873 Papaver somniferum HOM05D006009 ORTHO05D007389 1.0e-11 73.6 107 42.1
Aqoxy6G00035 Aquilegia oxysepala HOM05D006009 ORTHO05D007389 2.3e-11 72.4 118 43.2
PSO170G2218 Papaver somniferum HOM05D006009 ORTHO05D007389 2.3e-11 72.4 107 42.1
Zm00001eb145920 Zea mays HOM05D006009 ORTHO05D007389 2.3e-11 72.4 108 39.8
arahy.Tifrunner.gnm1.ann1.AUD1A6 Arachis hypogaea HOM05D006009 ORTHO05D007389 6.8e-11 70.9 106 42.5
arahy.Tifrunner.gnm1.ann1.WHZ4K1 Arachis hypogaea HOM05D006009 ORTHO05D007389 2.6e-10 68.9 106 42.5
unitig_8.g4550 Utricularia gibba HOM05D006009 ORTHO05D007389 2.6e-10 68.9 44 72.7
Peaxi162Scf00011g01924 Petunia axillaris HOM05D006009 ORTHO05D007389 4.4e-10 68.2 79 50.6
Prupe.1G585300 Prunus persica HOM05D006009 ORTHO05D007389 7.5e-10 67.4 44 70.5
MD08G1248100 Malus domestica HOM05D006009 ORTHO05D007389 2.2e-09 65.9 97 39.2
ATR1089G153 Amborella trichopoda HOM05D006009 ORTHO05D007389 1.7e-06 56.2 105 39.0
Sabra01G0173900 Salix brachista HOM05D006009 ORTHO05D007389 2.3e-06 55.8 112 39.3
vmacro01680 Vaccinium macrocarpon HOM05D006009 ORTHO05D007389 6.6e-06 54.3 70 47.1
HPP92_003614 Vanilla planifolia HOM05D006009 ORTHO05D007389 8.6e-06 53.9 93 35.5


User provided reference genes

Program Settings