Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p013924 Quercus lobata HOM05D001850 ORTHO05D002241 8.0e-52 206.8 106 100.0
QL08p013989 Quercus lobata HOM05D001850 ORTHO05D002241 1.7e-30 136.0 73 91.8
Duzib268G0562 Durio zibethinus HOM05D001850 ORTHO05D002241 4.0e-11 71.6 64 50.0
Thecc.07G055800 Theobroma cacao HOM05D001850 ORTHO05D002241 4.0e-11 71.6 64 50.0
TAR629G1060 Trochodendron aralioides HOM05D001850 ORTHO05D002241 5.2e-11 71.2 61 52.5
Atru.chr2.3151 Acer truncatum HOM05D001850 ORTHO05D002241 1.5e-10 69.7 68 51.5
Atru.chr6.3120 Acer truncatum HOM05D001850 ORTHO05D002241 1.5e-10 69.7 54 57.4
Duzib268G0542 Durio zibethinus HOM05D001850 ORTHO05D002241 1.5e-10 69.7 64 50.0
Lj3g0026531 Lotus japonicus HOM05D001850 ORTHO05D002241 2.0e-10 69.3 54 55.6
VMungo1127G0002 Vigna mungo HOM05D001850 ORTHO05D002241 3.4e-10 68.6 69 49.3
Ca_01566_v3 Cicer arietinum L. HOM05D001850 ORTHO05D002241 5.8e-10 67.8 79 43.0
Glyma.12G102600 Glycine max HOM05D001850 ORTHO05D002241 5.8e-10 67.8 69 47.8
Gohir.D01G060100 Gossypium hirsutum HOM05D001850 ORTHO05D002241 7.6e-10 67.4 64 45.3
Gorai.002G081500 Gossypium raimondii HOM05D001850 ORTHO05D002241 7.6e-10 67.4 64 45.3
Gohir.A13G058500 Gossypium hirsutum HOM05D001850 ORTHO05D002241 9.9e-10 67.0 54 55.6
Gohir.D13G063500 Gossypium hirsutum HOM05D001850 ORTHO05D002241 9.9e-10 67.0 54 55.6
Gorai.013G071900 Gossypium raimondii HOM05D001850 ORTHO05D002241 9.9e-10 67.0 54 55.6
Psat5g265880 Pisum sativum HOM05D001850 ORTHO05D002241 9.9e-10 67.0 79 43.0
Manes.12G077300 Manihot esculenta HOM05D001850 ORTHO05D002241 1.3e-09 66.6 54 55.6
Haze_12962 Corylus avellana HOM05D001850 ORTHO05D002241 1.7e-09 66.2 54 51.9
Eucgr.A01737 Eucalyptus grandis HOM05D001850 ORTHO05D002241 1.7e-09 66.2 54 57.4
Eucgr.A01738 Eucalyptus grandis HOM05D001850 ORTHO05D002241 1.7e-09 66.2 54 55.6
Phvul.011G107400 Phaseolus vulgaris HOM05D001850 ORTHO05D002241 1.7e-09 66.2 69 46.4
TPR.G19050 Trifolium pratense HOM05D001850 ORTHO05D002241 1.7e-09 66.2 69 47.8
Atru.chr2.3155 Acer truncatum HOM05D001850 ORTHO05D002241 2.9e-09 65.5 67 49.3
CSS0026942 Camellia sinensis var. sinensis HOM05D001850 ORTHO05D002241 2.9e-09 65.5 59 52.5
MD09G1103300 Malus domestica HOM05D001850 ORTHO05D002241 2.9e-09 65.5 68 47.1
MD17G1091200 Malus domestica HOM05D001850 ORTHO05D002241 2.9e-09 65.5 54 53.7
Psat7g197960 Pisum sativum HOM05D001850 ORTHO05D002241 2.9e-09 65.5 69 44.9
Potri.017G040900 Populus trichocarpa HOM05D001850 ORTHO05D002241 2.9e-09 65.5 58 51.7
Eucgr.F01002 Eucalyptus grandis HOM05D001850 ORTHO05D002241 3.8e-09 65.1 73 43.8
Glyma.06G301800 Glycine max HOM05D001850 ORTHO05D002241 3.8e-09 65.1 69 46.4
Gohir.A01G073500 Gossypium hirsutum HOM05D001850 ORTHO05D002241 3.8e-09 65.1 64 43.8
Nn1g06941 Nelumbo nucifera HOM05D001850 ORTHO05D002241 3.8e-09 65.1 55 52.7
Thecc.02G164100 Theobroma cacao HOM05D001850 ORTHO05D002241 3.8e-09 65.1 54 53.7
Dinv03948 Davidia involucrata HOM05D001850 ORTHO05D002241 4.9e-09 64.7 74 43.2
Duzib248G0344 Durio zibethinus HOM05D001850 ORTHO05D002241 4.9e-09 64.7 54 55.6
TPR.G30804 Trifolium pratense HOM05D001850 ORTHO05D002241 6.4e-09 64.3 69 44.9
Dinv10902 Davidia involucrata HOM05D001850 ORTHO05D002241 8.4e-09 63.9 54 50.0
FvH4_6g43740 Fragaria vesca HOM05D001850 ORTHO05D002241 8.4e-09 63.9 54 50.0
FAN02G1812 Fragaria x ananassa HOM05D001850 ORTHO05D002241 8.4e-09 63.9 54 50.0
FAN05G5371 Fragaria x ananassa HOM05D001850 ORTHO05D002241 8.4e-09 63.9 54 50.0
FAN09G1434 Fragaria x ananassa HOM05D001850 ORTHO05D002241 8.4e-09 63.9 54 50.0
FAN14G2170 Fragaria x ananassa HOM05D001850 ORTHO05D002241 8.4e-09 63.9 54 50.0
Manes.13G074501 Manihot esculenta HOM05D001850 ORTHO05D002241 8.4e-09 63.9 54 53.7
Nn1g03731 Nelumbo nucifera HOM05D001850 ORTHO05D002241 8.4e-09 63.9 88 38.6
Aqoxy4G02134 Aquilegia oxysepala HOM05D001850 ORTHO05D002241 1.1e-08 63.5 79 41.8
Lj3g0023668 Lotus japonicus HOM05D001850 ORTHO05D002241 1.1e-08 63.5 69 44.9
PGR042G2347 Punica granatum HOM05D001850 ORTHO05D002241 1.1e-08 63.5 54 51.9
MELO3C019224.2 Cucumis melo HOM05D001850 ORTHO05D002241 1.4e-08 63.2 54 50.0
CsaV3_2G035290 Cucumis sativus L. HOM05D001850 ORTHO05D002241 1.4e-08 63.2 54 50.0
Duzib132G1271 Durio zibethinus HOM05D001850 ORTHO05D002241 1.4e-08 63.2 54 51.9
Medtr2g089050 Medicago truncatula HOM05D001850 ORTHO05D002241 1.4e-08 63.2 69 44.9
Prupe.3G222400 Prunus persica HOM05D001850 ORTHO05D002241 1.4e-08 63.2 54 51.9
TAR627G0815 Trochodendron aralioides HOM05D001850 ORTHO05D002241 1.4e-08 63.2 90 40.0
GSVIVG01030648001 Vitis vinifera HOM05D001850 ORTHO05D002241 1.4e-08 63.2 54 51.9
ATR1088G014 Amborella trichopoda HOM05D001850 ORTHO05D002241 1.9e-08 62.8 77 39.0
Gohir.D12G139400 Gossypium hirsutum HOM05D001850 ORTHO05D002241 1.9e-08 62.8 54 50.0
Gorai.008G150400 Gossypium raimondii HOM05D001850 ORTHO05D002241 1.9e-08 62.8 54 50.0
Hma1.2p1_2477F.1_g322890 Hydrangea macrophylla HOM05D001850 ORTHO05D002241 1.9e-08 62.8 53 47.2
QL08p034224 Quercus lobata HOM05D001850 ORTHO05D002241 1.9e-08 62.8 56 51.8
RcHm_v2.0_Chr2g0160471 Rosa chinensis HOM05D001850 ORTHO05D002241 1.9e-08 62.8 54 50.0
Sabra17G0027800 Salix brachista HOM05D001850 ORTHO05D002241 1.9e-08 62.8 54 51.9
Aa31LG5G4250 Aethionema arabicum HOM05D001850 ORTHO05D002241 2.4e-08 62.4 64 46.9
Ciclev10016802m.g Citrus clementina HOM05D001850 ORTHO05D002241 2.4e-08 62.4 79 38.0
Cpa.g.sc8.252 Carica papaya HOM05D001850 ORTHO05D002241 3.2e-08 62.0 54 51.9
Thhalv10017335m.g Eutrema salsugineum HOM05D001850 ORTHO05D002241 3.2e-08 62.0 64 45.3
Gohir.A12G135280 Gossypium hirsutum HOM05D001850 ORTHO05D002241 3.2e-08 62.0 54 50.0
AL4G27670 Arabidopsis lyrata HOM05D001850 ORTHO05D002241 4.1e-08 61.6 64 43.8
AT2G32280 Arabidopsis thaliana HOM05D001850 ORTHO05D002241 4.1e-08 61.6 64 43.8
BcaB02g10479 Brassica carinata HOM05D001850 ORTHO05D002241 4.1e-08 61.6 64 45.3
A05p13090 Brassica napus HOM05D001850 ORTHO05D002241 4.1e-08 61.6 64 45.3
C04p17340 Brassica napus HOM05D001850 ORTHO05D002241 4.1e-08 61.6 64 45.3
BolC4t23285H Brassica oleracea HOM05D001850 ORTHO05D002241 4.1e-08 61.6 64 45.3
BraA05t20248Z Brassica rapa HOM05D001850 ORTHO05D002241 4.1e-08 61.6 64 45.3
SalBow7G1123 Salvia bowleyana HOM05D001850 ORTHO05D002241 4.1e-08 61.6 56 48.2
arahy.Tifrunner.gnm1.ann1.GRPF7N Arachis hypogaea HOM05D001850 ORTHO05D002241 5.4e-08 61.2 54 48.1
arahy.Tifrunner.gnm1.ann1.NPPN3F Arachis hypogaea HOM05D001850 ORTHO05D002241 5.4e-08 61.2 54 48.1
BcaC02g11336 Brassica carinata HOM05D001850 ORTHO05D002241 5.4e-08 61.2 64 45.3
Cfa014459 Carpinus fangiana HOM05D001850 ORTHO05D002241 5.4e-08 61.2 54 50.0
arahy.Tifrunner.gnm1.ann1.3MI1ZW Arachis hypogaea HOM05D001850 ORTHO05D002241 7.1e-08 60.8 82 43.9
arahy.Tifrunner.gnm1.ann1.WRD1HJ Arachis hypogaea HOM05D001850 ORTHO05D002241 7.1e-08 60.8 82 43.9
Lalb_Chr03g0028961 Lupinus albus HOM05D001850 ORTHO05D002241 7.1e-08 60.8 54 48.1
Sabra07G0097100 Salix brachista HOM05D001850 ORTHO05D002241 7.1e-08 60.8 54 53.7
THA.LOC104800977 Tarenaya hassleriana HOM05D001850 ORTHO05D002241 7.1e-08 60.8 64 45.3
CARHR126090 Cardamine hirsuta HOM05D001850 ORTHO05D002241 9.2e-08 60.5 64 43.8
Lj8A121G26 Lonicera japonica HOM05D001850 ORTHO05D002241 9.2e-08 60.5 54 50.0
Sp4g14670 Schrenkiella parvula HOM05D001850 ORTHO05D002241 9.2e-08 60.5 64 43.8
TWI18G1331 Tripterygium wilfordii HOM05D001850 ORTHO05D002241 1.6e-07 59.7 69 40.6
TWI36G0213 Tripterygium wilfordii HOM05D001850 ORTHO05D002241 1.6e-07 59.7 69 40.6
Potri.007G119600 Populus trichocarpa HOM05D001850 ORTHO05D002241 2.1e-07 59.3 57 50.9
A03p18100 Brassica napus HOM05D001850 ORTHO05D002241 2.7e-07 58.9 64 42.2
C03p21130 Brassica napus HOM05D001850 ORTHO05D002241 2.7e-07 58.9 54 44.4
BraA03t11069Z Brassica rapa HOM05D001850 ORTHO05D002241 2.7e-07 58.9 64 42.2
CANSAT64G2082 Cannabis sativa HOM05D001850 ORTHO05D002241 2.7e-07 58.9 54 48.1
Carub.0004s1362 Capsella rubella HOM05D001850 ORTHO05D002241 2.7e-07 58.9 64 43.8
Lalb_Chr14g0375611 Lupinus albus HOM05D001850 ORTHO05D002241 2.7e-07 58.9 79 39.2
Sed0006474 Sechium edule HOM05D001850 ORTHO05D002241 2.7e-07 58.9 54 44.4
GSVIVG01014579001 Vitis vinifera HOM05D001850 ORTHO05D002241 2.7e-07 58.9 52 50.0
ClCG02G008330 Citrullus lanatus HOM05D001850 ORTHO05D002241 3.5e-07 58.5 52 46.2
Hma1.2p1_0731F.1_g209940 Hydrangea macrophylla HOM05D001850 ORTHO05D002241 3.5e-07 58.5 54 51.9
Medtr4g045673 Medicago truncatula HOM05D001850 ORTHO05D002241 3.5e-07 58.5 54 46.3
PSO675G8180 Papaver somniferum HOM05D001850 ORTHO05D002241 3.5e-07 58.5 78 38.5
Sc12g0002460 Simmondsia chinensis HOM05D001850 ORTHO05D002241 3.5e-07 58.5 69 40.6
HPP92_012333 Vanilla planifolia HOM05D001850 ORTHO05D002241 3.5e-07 58.5 68 38.2
HPP92_012379 Vanilla planifolia HOM05D001850 ORTHO05D002241 3.5e-07 58.5 68 38.2
BcaC01g05913 Brassica carinata HOM05D001850 ORTHO05D002241 4.6e-07 58.2 54 44.4
Potri.004G031200 Populus trichocarpa HOM05D001850 ORTHO05D002241 4.6e-07 58.2 54 51.9
CSS0043908 Camellia sinensis var. sinensis HOM05D001850 ORTHO05D002241 7.8e-07 57.4 76 42.1
Migut.M00385 Erythranthe guttata HOM05D001850 ORTHO05D002241 7.8e-07 57.4 54 42.6
HanXRQChr10g0295471 Helianthus annuus HOM05D001850 ORTHO05D002241 7.8e-07 57.4 69 43.5
Lj1A1222G63 Lonicera japonica HOM05D001850 ORTHO05D002241 7.8e-07 57.4 87 40.2
Sabra11G0019000 Salix brachista HOM05D001850 ORTHO05D002241 7.8e-07 57.4 87 43.7
Sabra11G0024800 Salix brachista HOM05D001850 ORTHO05D002241 7.8e-07 57.4 87 43.7
VMungo0540G1029 Vigna mungo HOM05D002251 ORTHO05D002383 7.8e-07 57.4 96 35.4
Cc05_g05300 Coffea canephora HOM05D001850 ORTHO05D002241 1.3e-06 56.6 54 46.3
Manes.16G016700 Manihot esculenta HOM05D001850 ORTHO05D002241 1.3e-06 56.6 86 40.7
PSO541G0036 Papaver somniferum HOM05D001850 ORTHO05D002241 1.3e-06 56.6 78 37.2
Solyc02g079940.3 Solanum lycopersicum HOM05D001850 ORTHO05D002241 1.3e-06 56.6 54 51.9
Sopen02g024690 Solanum pennellii HOM05D001850 ORTHO05D002241 1.3e-06 56.6 54 51.9
PGSC0003DMG400021715 Solanum tuberosum HOM05D001850 ORTHO05D002241 1.3e-06 56.6 54 51.9
Ciclev10018256m.g Citrus clementina HOM05D001850 ORTHO05D002241 1.7e-06 56.2 77 40.3
Hma1.2p1_1682F.1_g297270 Hydrangea macrophylla HOM05D001850 ORTHO05D002241 1.7e-06 56.2 81 39.5
Potri.011G031500 Populus trichocarpa HOM05D001850 ORTHO05D002241 1.7e-06 56.2 54 53.7
ECA246G1058 Erigeron canadensis HOM05D001850 ORTHO05D002241 2.3e-06 55.8 54 50.0
Glyma.13G305100 Glycine max HOM05D001850 ORTHO05D002241 2.3e-06 55.8 69 39.1
MBI02_g02474_MAGBIO Magnolia biondii HOM05D001850 ORTHO05D002241 2.3e-06 55.8 64 45.3
Thecc.06G208300 Theobroma cacao HOM05D001850 ORTHO05D002241 2.3e-06 55.8 54 50.0
VMungo1080G0062 Vigna mungo HOM05D001850 ORTHO05D002241 2.3e-06 55.8 54 46.3
Atru.chr10.2042 Acer truncatum HOM05D001850 ORTHO05D002241 3.0e-06 55.5 91 37.4
CSS0018308 Camellia sinensis var. sinensis HOM05D001850 ORTHO05D002241 3.0e-06 55.5 79 36.7
CiPaw.10G066500 Carya illinoinensis HOM05D001850 ORTHO05D002241 3.0e-06 55.5 53 49.1
Duzib192G0838 Durio zibethinus HOM05D001850 ORTHO05D002241 3.0e-06 55.5 54 48.1
Glyma.12G197000 Glycine max HOM05D001850 ORTHO05D002241 3.0e-06 55.5 69 40.6
Manes.15G077800 Manihot esculenta HOM05D001850 ORTHO05D002241 3.0e-06 55.5 61 47.5
Phvul.005G112300 Phaseolus vulgaris HOM05D001850 ORTHO05D002241 3.0e-06 55.5 70 40.0
Sed0024097 Sechium edule HOM05D001850 ORTHO05D002241 3.0e-06 55.5 70 40.0
Solyc07g052910.3 Solanum lycopersicum HOM05D001850 ORTHO05D002241 3.0e-06 55.5 54 48.1
Sopen07g025810 Solanum pennellii HOM05D001850 ORTHO05D002241 3.0e-06 55.5 54 48.1
Sopen07g026460 Solanum pennellii HOM05D001850 ORTHO05D002241 3.0e-06 55.5 54 48.1
PGSC0003DMG400026165 Solanum tuberosum HOM05D001850 ORTHO05D002241 3.0e-06 55.5 54 48.1
CSS0013632 Camellia sinensis var. sinensis HOM05D001850 ORTHO05D002241 3.9e-06 55.1 76 40.8
CAN.G424.101 Capsicum annuum HOM05D001850 ORTHO05D002241 3.9e-06 55.1 54 50.0
CAN.G86.23 Capsicum annuum HOM05D001850 ORTHO05D002241 3.9e-06 55.1 54 46.3
Cfa014458 Carpinus fangiana HOM05D001850 ORTHO05D002241 3.9e-06 55.1 48 52.1
Dinv17854 Davidia involucrata HOM05D001850 ORTHO05D002241 3.9e-06 55.1 53 50.9
Nitab4.5_0002345g0100 Nicotiana tabacum HOM05D001850 ORTHO05D002241 3.9e-06 55.1 54 50.0
Nitab4.5_0006475g0010 Nicotiana tabacum HOM05D001850 ORTHO05D002241 3.9e-06 55.1 54 50.0
Oeu052536.2 Olea europaea HOM05D001850 ORTHO05D002241 3.9e-06 55.1 85 31.8
Peaxi162Scf00082g01214 Petunia axillaris HOM05D001850 ORTHO05D002241 3.9e-06 55.1 54 48.1
QL05p077191 Quercus lobata HOM05D001850 ORTHO05D002241 3.9e-06 55.1 77 39.0
Solyc12g005700.2 Solanum lycopersicum HOM05D001850 ORTHO05D002241 3.9e-06 55.1 54 44.4
CARHR227880 Cardamine hirsuta HOM05D001850 ORTHO05D002241 5.1e-06 54.7 79 39.2
Cfa016406 Carpinus fangiana HOM05D001850 ORTHO05D002241 5.1e-06 54.7 77 37.7
ECA248G2681 Erigeron canadensis HOM05D001850 ORTHO05D002241 5.1e-06 54.7 86 33.7
Thhalv10026413m.g Eutrema salsugineum HOM05D001850 ORTHO05D002241 5.1e-06 54.7 54 50.0
Lsat_1_v5_gn_4_69180 Lactuca sativa HOM05D001850 ORTHO05D002241 5.1e-06 54.7 69 42.0
Lj1A753T61 Lonicera japonica HOM05D001850 ORTHO05D002241 5.1e-06 54.7 64 37.5
Oeu011068.1 Olea europaea HOM05D001850 ORTHO05D002241 5.1e-06 54.7 69 37.7
QL93p0073_1299 Quercus lobata HOM05D001850 ORTHO05D002241 5.1e-06 54.7 77 37.7
Sopen12g001630 Solanum pennellii HOM05D001850 ORTHO05D002241 5.1e-06 54.7 54 42.6
AL7G32810 Arabidopsis lyrata HOM05D001850 ORTHO05D002241 6.6e-06 54.3 54 50.0
Carub.0007s2013 Capsella rubella HOM05D001850 ORTHO05D002241 6.6e-06 54.3 54 50.0
AUR62014622 Chenopodium quinoa HOM05D001850 ORTHO05D002241 6.6e-06 54.3 54 46.3
Duzib160G0639 Durio zibethinus HOM05D001850 ORTHO05D002241 6.6e-06 54.3 54 46.3
PGR042G2293 Punica granatum HOM05D001850 ORTHO05D002241 6.6e-06 54.3 53 50.9
Sp7g19380 Schrenkiella parvula HOM05D001850 ORTHO05D002241 6.6e-06 54.3 54 50.0
GSVIVG01002747001 Vitis vinifera HOM05D001850 ORTHO05D002241 6.6e-06 54.3 76 36.8
AT4G21310 Arabidopsis thaliana HOM05D001850 ORTHO05D002241 8.6e-06 53.9 54 48.1
BcaC09g51236 Brassica carinata HOM05D001850 ORTHO05D002241 8.6e-06 53.9 54 50.0
BcaNung03827 Brassica carinata HOM05D001850 ORTHO05D002241 8.6e-06 53.9 54 50.0
A01p12650 Brassica napus HOM05D001850 ORTHO05D002241 8.6e-06 53.9 54 50.0
C01p15240 Brassica napus HOM05D001850 ORTHO05D002241 8.6e-06 53.9 54 50.0
BolC1t01475H Brassica oleracea HOM05D001850 ORTHO05D002241 8.6e-06 53.9 54 50.0
BraA01t01208Z Brassica rapa HOM05D001850 ORTHO05D002241 8.6e-06 53.9 54 50.0
CANSAT56G1357 Cannabis sativa HOM05D001850 ORTHO05D002241 8.6e-06 53.9 76 38.2
AUR62012579 Chenopodium quinoa HOM05D001850 ORTHO05D002241 8.6e-06 53.9 54 44.4
Gohir.A10G016900 Gossypium hirsutum HOM05D001850 ORTHO05D002241 8.6e-06 53.9 54 48.1
Gohir.D10G017000 Gossypium hirsutum HOM05D001850 ORTHO05D002241 8.6e-06 53.9 54 48.1
Gorai.011G018900 Gossypium raimondii HOM05D001850 ORTHO05D002241 8.6e-06 53.9 54 48.1
SGA_v2.0_scaffold159G37594 Striga asiatica HOM05D001850 ORTHO05D002241 8.6e-06 53.9 54 44.4
SGA_v2.0_scaffold34G13878 Striga asiatica HOM05D001850 ORTHO05D002241 8.6e-06 53.9 54 46.3


User provided reference genes

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