Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 1.0e-203 713.4 410 100.0
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 9.5e-202 706.8 410 98.5
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 4.3e-138 495.4 408 69.4
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 5.5e-125 451.8 407 62.9
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 2.1e-124 449.9 408 63.7
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 9.7e-122 441.0 408 62.0
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 1.4e-120 437.2 436 59.6
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 5.5e-117 425.2 409 60.9
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 6.8e-115 418.3 364 65.9
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 4.8e-113 412.1 415 58.1
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 3.1e-112 409.5 406 60.6
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 1.0e-110 404.4 409 58.7
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 1.0e-110 404.4 406 59.4
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 3.8e-110 402.5 417 57.8
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 6.5e-110 401.7 416 58.2
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 3.2e-109 399.4 406 57.9
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 5.2e-107 392.1 407 57.5
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 1.5e-106 390.6 414 57.0
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 5.7e-106 388.7 412 57.0
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 9.8e-106 387.9 374 59.6
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 3.1e-104 382.9 412 55.8
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 2.7e-103 379.8 407 54.8
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 4.5e-103 379.0 417 55.2
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 7.7e-103 378.3 427 54.8
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 5.0e-102 375.6 416 54.6
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 8.6e-102 374.8 430 54.4
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 3.3e-101 372.9 308 67.2
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 1.2e-100 370.9 356 60.1
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 2.8e-100 369.8 409 54.0
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 1.0e-99 367.9 388 56.4
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.2e-98 364.4 429 53.6
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 2.6e-98 363.2 411 53.0
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 7.5e-98 361.7 415 54.0
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 1.3e-97 360.9 415 54.0
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.7e-97 360.5 417 52.8
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 4.9e-97 359.0 417 53.0
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 3.2e-96 356.3 421 52.5
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 5.4e-96 355.5 415 54.0
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 7.0e-96 355.1 412 53.9
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 2.0e-95 353.6 394 56.6
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 2.7e-95 353.2 435 53.8
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 3.5e-95 352.8 413 53.0
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 1.3e-94 350.9 405 52.3
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 2.9e-94 349.7 413 52.1
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 1.9e-93 347.1 425 50.4
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 3.3e-93 346.3 414 52.9
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 1.2e-92 344.4 220 84.1
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 1.2e-92 344.4 357 54.3
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 1.0e-91 341.3 409 51.6
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 1.4e-91 340.9 277 69.3
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 2.3e-91 340.1 424 49.8
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 6.8e-91 338.6 402 51.0
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 6.8e-91 338.6 403 53.1
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 6.8e-91 338.6 217 81.6
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 1.5e-90 337.4 390 53.6
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 4.4e-90 335.9 410 49.8
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 4.4e-90 335.9 414 50.2
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 5.8e-90 335.5 362 57.2
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 1.3e-89 334.3 260 67.7
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 4.9e-89 332.4 339 58.1
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 2.4e-88 330.1 403 51.4
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 9.2e-88 328.2 287 65.9
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 1.2e-87 327.8 359 56.5
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 3.0e-86 323.2 363 52.3
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 3.9e-86 322.8 427 48.2
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 6.6e-86 322.0 428 48.1
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 1.2e-84 317.8 429 46.4
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 6.2e-84 315.5 439 46.0
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 1.1e-83 314.7 414 49.8
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 3.1e-83 313.2 434 45.9
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 5.2e-83 312.4 254 64.6
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 5.2e-83 312.4 417 48.4
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 2.0e-82 310.5 414 47.8
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 1.7e-81 307.4 255 65.5
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 3.2e-80 303.1 360 53.1
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 4.1e-80 302.8 465 44.5
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 9.2e-80 301.6 408 46.3
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 3.9e-78 296.2 285 59.3
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 6.6e-78 295.4 407 46.7
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 2.1e-76 290.4 407 46.4
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 2.3e-75 287.0 294 55.4
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 5.2e-75 285.8 294 54.4
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 1.5e-74 284.3 442 44.8
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 7.6e-74 282.0 244 64.8
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 2.9e-73 280.0 246 61.8
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 3.2e-72 276.6 372 45.7
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 7.1e-72 275.4 444 41.0
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 6.0e-71 272.3 404 47.5
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 6.0e-71 272.3 252 59.9
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.0e-70 271.6 414 44.9
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 9.6e-69 265.0 403 43.9
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 3.4e-66 256.5 186 73.1
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 5.8e-66 255.8 284 52.1
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 5.8e-66 255.8 284 52.1
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 5.8e-66 255.8 284 52.1
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 7.6e-66 255.4 374 46.0
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 1.3e-65 254.6 427 41.7
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 1.7e-65 254.2 249 57.8
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 2.9e-65 253.4 485 42.3
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 7.1e-64 248.8 249 56.6
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 7.8e-63 245.4 249 55.0
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 2.3e-62 243.8 292 50.3
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 8.7e-62 241.9 254 54.7
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 4.3e-61 239.6 417 41.0
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 2.1e-60 237.3 260 55.0
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 5.3e-59 232.6 245 53.5
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 9.0e-59 231.9 183 67.8
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 3.4e-58 229.9 184 69.0
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 9.3e-56 221.9 412 39.8
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 3.5e-55 219.9 213 58.7
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 6.0e-55 219.2 261 51.0
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 1.3e-52 211.5 408 40.2
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 2.8e-52 210.3 291 45.4
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 3.6e-52 209.9 296 48.3
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 7.6e-50 202.2 192 59.9
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 4.9e-49 199.5 284 43.7
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 4.2e-48 196.4 215 52.1
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 9.3e-48 195.3 275 45.5
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 1.2e-47 194.9 183 60.1
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 2.7e-47 193.7 243 49.4
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 4.6e-47 193.0 306 46.4
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 5.6e-45 186.0 419 34.8
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 3.1e-43 180.3 223 51.6
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.0e-41 175.3 198 48.0
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 6.0e-39 166.0 207 48.3
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 1.0e-38 165.2 122 71.3
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 1.8e-38 164.5 137 67.9
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 1.1e-37 161.8 254 46.9
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 4.5e-34 149.8 147 57.8
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 2.9e-33 147.1 147 57.1
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 1.6e-31 141.4 183 46.4
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 3.3e-29 133.7 93 74.2
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 2.4e-27 127.5 114 60.5
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 4.1e-27 126.7 85 71.8
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 6.9e-27 125.9 84 76.2
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 7.7e-26 122.5 111 60.4
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 8.5e-25 119.0 128 53.1
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 8.5e-25 119.0 128 53.1
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 2.7e-23 114.0 81 66.7
EL10Ac9g22233 Beta vulgaris HOM05D004411 ORTHO05D005569 6.1e-23 112.8 257 34.6
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 7.9e-23 112.5 217 37.8
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 9.7e-21 105.5 86 62.8
Lalb_Chr15g0080381 Lupinus albus HOM05D004411 ORTHO05D005569 3.1e-19 100.5 121 46.3
Mapoly0160s0028 Marchantia polymorpha HOM05D004411 ORTHO05D005569 1.4e-16 91.7 215 31.2
Haze_07158 Corylus avellana HOM05D004411 ORTHO05D005569 1.9e-16 91.3 68 70.6
GSVIVG01036883001 Vitis vinifera HOM05D004411 ORTHO05D005569 1.2e-15 88.6 55 74.5
arahy.Tifrunner.gnm1.ann1.ZM7UYF Arachis hypogaea HOM05D004411 ORTHO05D005569 1.6e-15 88.2 81 59.3
SMO367G0149 Selaginella moellendorffii HOM05D004411 ORTHO05D005569 3.7e-12 77.0 195 29.7
arahy.Tifrunner.gnm1.ann1.H97TV8 Arachis hypogaea HOM05D004411 ORTHO05D005569 1.1e-11 75.5 83 49.4
Haze_07157 Corylus avellana HOM05D004411 ORTHO05D005569 1.2e-10 72.0 132 43.2
PGSC0003DMG400013925 Solanum tuberosum HOM05D004411 ORTHO05D005569 2.0e-10 71.2 49 69.4
AagrBONN_evm.TU.Sc2ySwM_344.3992 Anthoceros agrestis HOM05D004411 ORTHO05D005569 5.9e-10 69.7 113 41.6


User provided reference genes

Program Settings