Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p011714 Quercus lobata HOM05D060419 ORTHO05D337834 1.0e-125 453.4 227 100.0
QL01p053718 Quercus lobata HOM05D060419 ORTHO05D337540 3.3e-18 96.3 58 82.8
Lj3C804T1 Lonicera japonica HOM05D000007 ORTHO05D000017 9.2e-13 78.2 157 33.8
Lj3A538T48 Lonicera japonica HOM05D000007 ORTHO05D000017 1.2e-12 77.8 190 31.1
RcHm_v2.0_Chr1g0372381 Rosa chinensis HOM05D000007 ORTHO05D000017 4.6e-12 75.9 195 28.7
Dinv23704 Davidia involucrata HOM05D000007 ORTHO05D000039 1.5e-10 70.9 196 26.5
TAR627G1140 Trochodendron aralioides HOM05D000007 ORTHO05D000017 1.9e-10 70.5 175 30.9
CANSAT56G3723 Cannabis sativa HOM05D000007 ORTHO05D000017 2.5e-10 70.1 192 27.6
Lj9P364T59 Lonicera japonica HOM05D000007 ORTHO05D000017 7.3e-10 68.6 200 33.5
Dinv15480 Davidia involucrata HOM05D000007 ORTHO05D000039 1.2e-09 67.8 197 27.9
PGSC0003DMG400013111 Solanum tuberosum HOM05D000007 ORTHO05D000017 2.1e-09 67.0 192 26.6
PSO079G0003 Papaver somniferum HOM05D000007 ORTHO05D000017 3.6e-09 66.2 225 24.9
Potri.001G318400 Populus trichocarpa HOM05D000007 ORTHO05D000017 3.6e-09 66.2 200 27.0
Sc05g0008360 Simmondsia chinensis HOM05D000007 ORTHO05D000017 3.6e-09 66.2 195 27.7
Nitab4.5_0010402g0020 Nicotiana tabacum HOM05D000007 ORTHO05D014560 4.7e-09 65.9 177 29.9
PSO210G5121 Papaver somniferum HOM05D000007 ORTHO05D000017 4.7e-09 65.9 220 25.9
Cfa003137 Carpinus fangiana HOM05D000007 ORTHO05D000017 6.2e-09 65.5 189 29.1
QL11p009377 Quercus lobata HOM05D000007 ORTHO05D000017 6.2e-09 65.5 184 27.2
Lj7C406T3 Lonicera japonica HOM05D000007 ORTHO05D000017 8.0e-09 65.1 200 26.0
Prupe.3G110400 Prunus persica HOM05D000007 ORTHO05D000039 8.0e-09 65.1 200 27.5
QL08p064911 Quercus lobata HOM05D000007 ORTHO05D000017 1.0e-08 64.7 200 26.0
Haze_25865 Corylus avellana HOM05D000007 ORTHO05D000017 1.4e-08 64.3 185 28.6
PSO478G2201 Papaver somniferum HOM05D000007 ORTHO05D000017 1.4e-08 64.3 213 23.9
Lalb_Chr15g0087251 Lupinus albus HOM05D000007 ORTHO05D000017 1.8e-08 63.9 199 27.1
Dinv21276 Davidia involucrata HOM05D000007 ORTHO05D000039 2.3e-08 63.5 197 27.9
Lj1P652T23 Lonicera japonica HOM05D000007 ORTHO05D000039 2.3e-08 63.5 199 25.6
Cc07_g15070 Coffea canephora HOM05D000007 ORTHO05D000017 3.1e-08 63.2 176 26.7
Medtr3g036430 Medicago truncatula HOM05D000007 ORTHO05D000017 3.1e-08 63.2 177 26.0
PSO478G3572 Papaver somniferum HOM05D000007 ORTHO05D000017 3.1e-08 63.2 192 27.1
Sopen09g028740 Solanum pennellii HOM05D000007 ORTHO05D000017 3.1e-08 63.2 194 27.3
vmacro12417 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 3.1e-08 63.2 195 24.1
Medtr3g030250 Medicago truncatula HOM05D000007 ORTHO05D000017 4.0e-08 62.8 191 25.7
PSO541G3012 Papaver somniferum HOM05D000007 ORTHO05D000017 4.0e-08 62.8 162 30.2
Solyc09g072930.1 Solanum lycopersicum HOM05D000007 ORTHO05D000017 4.0e-08 62.8 189 27.5
Lsat_1_v5_gn_0_29401 Lactuca sativa HOM05D000007 ORTHO05D000039 5.2e-08 62.4 198 25.8
Lj6C667T7 Lonicera japonica HOM05D000007 ORTHO05D000017 5.2e-08 62.4 194 28.4
PSO063G1871 Papaver somniferum HOM05D000007 ORTHO05D000017 6.8e-08 62.0 197 25.9
PSO536G0001 Papaver somniferum HOM05D000007 ORTHO05D000017 6.8e-08 62.0 199 25.6
PSO832G1012 Papaver somniferum HOM05D000007 ORTHO05D000017 6.8e-08 62.0 199 25.6
PSO832G3836 Papaver somniferum HOM05D000007 ORTHO05D000017 6.8e-08 62.0 199 25.6
Peaxi162Scf00421g00021 Petunia axillaris HOM05D000007 ORTHO05D000017 6.8e-08 62.0 257 24.9
Cfa007560 Carpinus fangiana HOM05D000007 ORTHO05D000039 8.9e-08 61.6 185 27.6
Ca_00600_v3 Cicer arietinum L. HOM05D000007 ORTHO05D000017 8.9e-08 61.6 205 25.4
Lsat_1_v5_gn_0_29421 Lactuca sativa HOM05D000007 ORTHO05D000039 8.9e-08 61.6 199 26.6
Nitab4.5_0003487g0060 Nicotiana tabacum HOM05D000007 ORTHO05D000022 1.2e-07 61.2 180 28.3
PSO079G0042 Papaver somniferum HOM05D000007 ORTHO05D000017 1.2e-07 61.2 215 26.5
PSO478G4100 Papaver somniferum HOM05D000007 ORTHO05D000017 1.2e-07 61.2 197 24.9
Sc05g0008330 Simmondsia chinensis HOM05D000007 ORTHO05D000017 1.2e-07 61.2 195 28.7
TAR626G0319 Trochodendron aralioides HOM05D000007 ORTHO05D000017 1.2e-07 61.2 179 25.1
TPR.G40220 Trifolium pratense HOM05D000007 ORTHO05D000017 1.5e-07 60.8 139 33.1
TAR624G0469 Trochodendron aralioides HOM05D000007 ORTHO05D000521 2.0e-07 60.5 180 27.2
PSO461G0001 Papaver somniferum HOM05D000007 ORTHO05D000017 2.6e-07 60.1 216 26.4
vmacro18930 Vaccinium macrocarpon HOM05D000007 ORTHO05D000017 2.6e-07 60.1 196 26.5
Cfa015552 Carpinus fangiana HOM05D000007 ORTHO05D000017 3.4e-07 59.7 190 26.3
AUR62018834 Chenopodium quinoa HOM05D000007 ORTHO05D024983 3.4e-07 59.7 185 28.6
Duzib268G0983 Durio zibethinus HOM05D000007 ORTHO05D000017 3.4e-07 59.7 194 27.3
Prupe.3G110600 Prunus persica HOM05D000007 ORTHO05D000039 3.4e-07 59.7 200 26.5
PGSC0003DMG400022664 Solanum tuberosum HOM05D000007 ORTHO05D000017 3.4e-07 59.7 207 26.6
PGSC0003DMG400029654 Solanum tuberosum HOM05D000007 ORTHO05D000017 3.4e-07 59.7 204 26.5
FvH4_3g18082 Fragaria vesca HOM05D000007 ORTHO05D000017 4.4e-07 59.3 176 26.7
FAN16G3618 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.4e-07 59.3 176 26.7
Medtr2g021150 Medicago truncatula HOM05D000007 ORTHO05D000017 4.4e-07 59.3 202 25.7
Nn6g34491 Nelumbo nucifera HOM05D000007 ORTHO05D000017 4.4e-07 59.3 151 27.2
PGR083G2034 Punica granatum HOM05D000007 ORTHO05D000017 4.4e-07 59.3 194 28.4
Thecc.04G201900 Theobroma cacao HOM05D000007 ORTHO05D025156 4.4e-07 59.3 184 27.7
CAN.G132.14 Capsicum annuum HOM05D000007 ORTHO05D000017 5.8e-07 58.9 197 25.9
Glyma.13G211000 Glycine max HOM05D000007 ORTHO05D000017 5.8e-07 58.9 195 27.7
Lj6g0019357 Lotus japonicus HOM05D000007 ORTHO05D000017 5.8e-07 58.9 175 26.3
PSO478G1212 Papaver somniferum HOM05D000007 ORTHO05D000017 5.8e-07 58.9 197 24.9
Aqoxy3G02635 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 7.5e-07 58.5 201 22.9
Lj1C663T2 Lonicera japonica HOM05D000007 ORTHO05D000039 7.5e-07 58.5 196 26.0
PSO541G0121 Papaver somniferum HOM05D000007 ORTHO05D000017 7.5e-07 58.5 200 24.5
PSO541G3853 Papaver somniferum HOM05D000007 ORTHO05D000017 7.5e-07 58.5 199 27.1
Potri.001G318300 Populus trichocarpa HOM05D000007 ORTHO05D000017 7.5e-07 58.5 193 27.5
RcHm_v2.0_Chr2g0154601 Rosa chinensis HOM05D000007 ORTHO05D000017 7.5e-07 58.5 201 24.4
DCAR_031132 Daucus carota HOM05D000007 ORTHO05D000039 9.8e-07 58.2 190 26.8
FAN09G2242 Fragaria x ananassa HOM05D000007 ORTHO05D000017 9.8e-07 58.2 193 25.9
PSO339G5648 Papaver somniferum HOM05D000007 ORTHO05D000017 9.8e-07 58.2 209 23.9
PSO384G0988 Papaver somniferum HOM05D000007 ORTHO05D000017 9.8e-07 58.2 193 24.9
Prupe.7G269000 Prunus persica HOM05D000007 ORTHO05D000017 9.8e-07 58.2 234 20.5
Haze_00995 Corylus avellana HOM05D000007 ORTHO05D000017 1.3e-06 57.8 196 27.6
DCAR_004119 Daucus carota HOM05D000007 ORTHO05D013591 1.3e-06 57.8 101 34.7
ECA233G3632 Erigeron canadensis HOM05D001714 ORTHO05D000017 1.3e-06 57.8 231 25.1
Lju1601C0T10 Lonicera japonica HOM05D000007 ORTHO05D000039 1.3e-06 57.8 211 26.1
Medtr3g007360 Medicago truncatula HOM05D000007 ORTHO05D000017 1.3e-06 57.8 196 26.0
Medtr3g011060 Medicago truncatula HOM05D000007 ORTHO05D000017 1.3e-06 57.8 202 24.8
PSO210G5368 Papaver somniferum HOM05D000007 ORTHO05D000017 1.3e-06 57.8 205 25.4
Peaxi162Scf00246g00811 Petunia axillaris HOM05D000007 ORTHO05D000017 1.3e-06 57.8 171 29.2
TAR624G0295 Trochodendron aralioides HOM05D000007 ORTHO05D000521 1.3e-06 57.8 194 25.8
Haze_14482 Corylus avellana HOM05D000007 ORTHO05D000039 1.7e-06 57.4 192 27.1
Medtr3g007330 Medicago truncatula HOM05D000007 ORTHO05D000017 1.7e-06 57.4 185 25.9
RcHm_v2.0_Chr5g0006271 Rosa chinensis HOM05D000007 ORTHO05D000017 1.7e-06 57.4 107 34.6
PGSC0003DMG400003797 Solanum tuberosum HOM05D000007 ORTHO05D000017 1.7e-06 57.4 187 24.6
Thecc.06G234200 Theobroma cacao HOM05D000007 ORTHO05D000017 1.7e-06 57.4 180 26.1
Dinv38256 Davidia involucrata HOM05D000007 ORTHO05D000017 2.2e-06 57.0 174 28.7
Lj3P654T36 Lonicera japonica HOM05D000007 ORTHO05D000017 2.2e-06 57.0 204 27.9
Lj6g0014323 Lotus japonicus HOM05D000007 ORTHO05D000017 2.2e-06 57.0 188 25.0
Psat1g185120 Pisum sativum HOM05D000007 ORTHO05D000017 2.2e-06 57.0 204 22.5
SGA_v2.0_scaffold104G30094 Striga asiatica HOM05D000007 ORTHO05D000017 2.2e-06 57.0 200 25.0
vmacro09289 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 2.2e-06 57.0 195 23.6
vmacro22920 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 2.2e-06 57.0 195 23.6
Actinidia11524 Actinidia chinensis HOM05D000007 ORTHO05D000017 2.9e-06 56.6 197 26.4
Ca_00604_v3 Cicer arietinum L. HOM05D000007 ORTHO05D000017 2.9e-06 56.6 202 23.8
Eucgr.H02923 Eucalyptus grandis HOM05D000007 ORTHO05D000017 2.9e-06 56.6 172 27.3
FvH4_6g40002 Fragaria vesca HOM05D000007 ORTHO05D000017 2.9e-06 56.6 194 24.7
Glyma.15G101600 Glycine max HOM05D000007 ORTHO05D000017 2.9e-06 56.6 194 25.8
Lj3P804T22 Lonicera japonica HOM05D000007 ORTHO05D000017 2.9e-06 56.6 187 27.3
Lj6g0009082 Lotus japonicus HOM05D000007 ORTHO05D000017 2.9e-06 56.6 200 26.0
Phvul.006G157000 Phaseolus vulgaris HOM05D000007 ORTHO05D000017 2.9e-06 56.6 206 25.7
QL02p063538 Quercus lobata HOM05D000007 ORTHO05D000017 2.9e-06 56.6 182 25.8
Dinv05849 Davidia involucrata HOM05D000007 ORTHO05D000521 3.7e-06 56.2 191 22.5
Lj6g0021912 Lotus japonicus HOM05D000007 ORTHO05D000017 3.7e-06 56.2 199 24.1
HanXRQChr08g0215021 Helianthus annuus HOM05D000007 ORTHO05D000017 4.9e-06 55.8 183 27.3
Medtr3g007410 Medicago truncatula HOM05D000007 ORTHO05D000017 4.9e-06 55.8 196 25.5
PSO384G1088 Papaver somniferum HOM05D000007 ORTHO05D000017 4.9e-06 55.8 193 23.3
RcHm_v2.0_Chr5g0030151 Rosa chinensis HOM05D000007 ORTHO05D000017 4.9e-06 55.8 192 25.5
Sed0003446 Sechium edule HOM05D000007 ORTHO05D000039 4.9e-06 55.8 196 25.5
TAR627G0357 Trochodendron aralioides HOM05D000007 ORTHO05D000521 4.9e-06 55.8 173 25.4
MSTRG.10148 Avicennia marina HOM05D000007 ORTHO05D000017 6.4e-06 55.5 192 26.6
Medtr3g007430 Medicago truncatula HOM05D000007 ORTHO05D000017 6.4e-06 55.5 194 26.8
Medtr4g055060 Medicago truncatula HOM05D000007 ORTHO05D000017 6.4e-06 55.5 181 27.6
Nn6g34495 Nelumbo nucifera HOM05D000007 ORTHO05D000017 6.4e-06 55.5 150 28.0
PGSC0003DMG400039953 Solanum tuberosum HOM05D000007 ORTHO05D000017 6.4e-06 55.5 199 26.1
Nn8g40113 Nelumbo nucifera HOM05D000007 ORTHO05D000017 8.3e-06 55.1 199 25.1
Nitab4.5_0002171g0100 Nicotiana tabacum HOM05D000007 ORTHO05D000017 8.3e-06 55.1 209 25.4
PSO079G0019 Papaver somniferum HOM05D000007 ORTHO05D000017 8.3e-06 55.1 219 25.1
Peaxi162Scf01604g00123 Petunia axillaris HOM05D000007 ORTHO05D000017 8.3e-06 55.1 191 24.6
QL06p042505 Quercus lobata HOM05D028104 ORTHO05D337229 8.3e-06 55.1 56 55.4
RcHm_v2.0_Chr2g0116421 Rosa chinensis HOM05D000007 ORTHO05D000039 8.3e-06 55.1 201 25.4
VMungo0540G1914 Vigna mungo HOM05D000007 ORTHO05D000017 8.3e-06 55.1 206 25.7


User provided reference genes

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