Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 1.8e-139 499.2 248 100.0
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 5.3e-139 497.7 248 99.6
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 1.3e-137 493.0 248 98.4
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 1.1e-128 463.4 246 93.1
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 9.4e-128 460.3 248 92.3
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 1.2e-127 459.9 246 93.1
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 1.2e-127 459.9 246 93.1
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 2.1e-127 459.1 246 91.9
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 3.6e-127 458.4 244 93.4
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 1.8e-126 456.1 244 91.8
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 5.1e-126 454.5 246 90.7
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 8.8e-126 453.8 246 91.1
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 1.1e-125 453.4 244 93.0
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 1.5e-125 453.0 246 91.1
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 3.3e-125 451.8 250 90.8
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 3.3e-125 451.8 244 91.0
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 4.4e-125 451.4 250 90.0
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 5.7e-125 451.1 240 91.7
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 7.4e-125 450.7 244 92.6
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 7.4e-125 450.7 250 90.4
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.3e-124 449.9 250 89.6
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 1.3e-124 449.9 244 92.2
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 1.7e-124 449.5 247 90.7
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 1.7e-124 449.5 247 90.7
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 2.2e-124 449.1 246 90.7
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 2.2e-124 449.1 250 89.6
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 3.7e-124 448.4 244 89.8
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 4.8e-124 448.0 248 90.7
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 4.8e-124 448.0 248 90.7
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 4.8e-124 448.0 246 90.7
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 1.1e-123 446.8 246 90.2
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 1.4e-123 446.4 246 89.4
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 1.4e-123 446.4 248 90.3
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 1.4e-123 446.4 249 89.6
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 1.8e-123 446.0 244 89.3
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 4.1e-123 444.9 246 90.2
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 4.1e-123 444.9 247 89.1
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 5.3e-123 444.5 247 88.7
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 7.0e-123 444.1 258 87.2
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 1.5e-122 443.0 244 88.9
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 2.6e-122 442.2 244 90.2
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 2.6e-122 442.2 244 88.5
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 4.5e-122 441.4 246 88.6
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 4.5e-122 441.4 247 88.7
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 5.9e-122 441.0 247 88.7
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 1.0e-121 440.3 246 88.6
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 1.0e-121 440.3 244 90.6
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 1.7e-121 439.5 248 88.7
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 2.2e-121 439.1 250 87.2
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 3.8e-121 438.3 233 92.7
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 3.8e-121 438.3 248 88.7
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 5.0e-121 438.0 250 86.4
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 6.5e-121 437.6 244 87.3
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 6.5e-121 437.6 250 86.4
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 8.5e-121 437.2 244 88.5
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 1.1e-120 436.8 250 86.0
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 1.1e-120 436.8 241 88.4
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 1.9e-120 436.0 246 87.8
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 1.9e-120 436.0 246 86.2
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 4.2e-120 434.9 293 78.2
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 5.5e-120 434.5 246 88.2
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 1.2e-119 433.3 241 87.6
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 1.6e-119 433.0 244 87.7
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 1.6e-119 433.0 249 88.4
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 1.6e-119 433.0 247 86.2
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 1.6e-119 433.0 244 87.7
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 3.6e-119 431.8 240 87.9
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 6.1e-119 431.0 268 82.1
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 1.4e-118 429.9 241 86.7
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 1.4e-118 429.9 241 86.7
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 2.3e-118 429.1 249 88.0
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 3.0e-118 428.7 246 86.6
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 5.2e-118 427.9 241 86.7
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 8.8e-118 427.2 241 86.7
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 1.5e-117 426.4 241 86.7
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 1.5e-117 426.4 241 86.7
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 1.5e-117 426.4 243 86.8
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 2.6e-117 425.6 241 86.7
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 2.6e-117 425.6 241 86.7
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 2.6e-117 425.6 241 87.1
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 4.4e-117 424.9 241 86.3
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 9.7e-117 423.7 241 86.3
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 9.7e-117 423.7 241 86.3
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 1.3e-116 423.3 233 90.6
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.3e-116 423.3 248 82.3
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 7.0e-115 417.5 297 73.1
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 9.1e-115 417.2 241 85.5
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 1.6e-114 416.4 266 79.7
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 8.5e-113 410.6 230 87.0
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 2.7e-111 405.6 246 82.5
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 1.4e-110 403.3 244 79.1
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 1.2e-109 400.2 246 80.1
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 7.5e-109 397.5 250 79.6
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 3.1e-107 392.1 360 58.9
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 9.1e-107 390.6 252 81.0
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 2.9e-105 385.6 242 78.1
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 3.6e-103 378.6 212 88.7
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 1.5e-101 373.2 220 82.3
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 3.4e-101 372.1 249 70.3
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 5.7e-101 371.3 245 78.4
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 7.0e-99 364.4 238 75.6
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 5.5e-96 354.8 250 74.4
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 4.0e-94 348.6 228 78.1
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 9.8e-93 344.0 246 74.8
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 2.0e-90 336.3 206 81.1
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 2.7e-90 335.9 194 87.6
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 3.6e-87 325.5 238 66.4
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 2.0e-85 319.7 175 90.3
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 5.4e-83 311.6 324 56.8
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 4.6e-82 308.5 187 83.4
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 3.9e-73 278.9 151 90.7
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 2.8e-71 272.7 202 71.3
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 2.3e-70 269.6 240 54.6
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 2.0e-69 266.5 175 76.6
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 6.4e-68 261.5 211 69.2
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 5.1e-65 251.9 253 51.4
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 2.5e-64 249.6 152 78.3
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 2.2e-60 236.5 195 64.6
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 4.6e-58 228.8 248 54.4
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 5.8e-53 211.8 118 89.0
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 1.5e-48 197.2 120 83.3
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 5.6e-48 195.3 99 93.9
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 9.0e-46 188.0 249 45.4
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 1.6e-42 177.2 94 89.4
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 7.9e-42 174.9 96 86.5
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 9.6e-40 167.9 253 35.2
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 3.7e-39 166.0 158 63.9
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 1.5e-37 160.6 94 84.0
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 9.9e-37 157.9 90 83.3
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 3.4e-29 132.9 128 60.2
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 2.1e-18 97.1 65 66.2
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 1.1e-16 91.3 98 53.1
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 1.5e-16 90.9 136 45.6
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 1.1e-14 84.7 55 76.4
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 5.3e-14 82.4 44 81.8
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 1.0e-12 78.2 56 71.4
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 6.7e-09 65.5 30 93.3
Zm00001eb057030 Zea mays HOM05D000424 ORTHO05D000355 3.3e-08 63.2 55 63.6


User provided reference genes

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