Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p011145 Quercus lobata HOM05D007003 ORTHO05D008499 2.3e-279 964.9 496 100.0
QL03p009927 Quercus lobata HOM05D007003 ORTHO05D008499 1.6e-275 952.2 496 98.6
Haze_09661 Corylus avellana HOM05D007003 ORTHO05D008499 5.4e-159 565.1 465 66.9
Cfa020358 Carpinus fangiana HOM05D007003 ORTHO05D008499 7.3e-156 554.7 461 65.9
Cfa020360 Carpinus fangiana HOM05D007003 ORTHO05D008499 2.9e-136 489.6 463 62.0
CiPaw.12G128900 Carya illinoinensis HOM05D007003 ORTHO05D008499 2.0e-129 466.8 458 57.0
Prupe.4G211300 Prunus persica HOM05D007003 ORTHO05D008499 9.6e-124 448.0 461 55.3
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 6.7e-117 425.2 461 52.7
CANSAT21G1622 Cannabis sativa HOM05D007003 ORTHO05D008499 1.4e-114 417.5 453 52.8
Thecc.07G042400 Theobroma cacao HOM05D007003 ORTHO05D008499 5.5e-111 405.6 461 51.2
RcHm_v2.0_Chr5g0039141 Rosa chinensis HOM05D007003 ORTHO05D008499 2.7e-110 403.3 456 52.6
FvH4_3g22471 Fragaria vesca HOM05D007003 ORTHO05D008499 2.3e-109 400.2 455 51.0
FAN21G0080 Fragaria x ananassa HOM05D007003 ORTHO05D008499 4.8e-107 392.5 455 50.5
Cpa.g.sc97.17 Carica papaya HOM05D007003 ORTHO05D008499 2.0e-105 387.1 457 48.6
Atru.chr2.3373 Acer truncatum HOM05D007003 ORTHO05D008499 6.5e-104 382.1 457 50.1
Duzib213G0769 Durio zibethinus HOM05D007003 ORTHO05D008499 1.1e-103 381.3 499 47.5
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 2.5e-103 380.2 455 49.0
Ciclev10008359m.g Citrus clementina HOM05D007003 ORTHO05D008499 7.4e-100 368.6 458 48.9
Glyma.14G024800 Glycine max HOM05D007003 ORTHO05D008499 1.7e-99 367.5 462 48.9
TAR627G0793 Trochodendron aralioides HOM05D007003 ORTHO05D008499 1.1e-98 364.8 455 47.9
VMungo0647G1301 Vigna mungo HOM05D007003 ORTHO05D008499 4.1e-98 362.8 464 48.1
Lalb_Chr04g0248491 Lupinus albus HOM05D007003 ORTHO05D008499 8.5e-96 355.1 461 47.5
CSS0047719 Camellia sinensis var. sinensis HOM05D007003 ORTHO05D008499 1.4e-93 347.8 456 46.7
Phvul.008G266200 Phaseolus vulgaris HOM05D007003 ORTHO05D008499 1.4e-93 347.8 465 47.1
Nn1g03566 Nelumbo nucifera HOM05D007003 ORTHO05D008499 1.3e-91 341.3 455 45.1
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 4.1e-90 336.3 463 47.3
LjContig00272g0003747 Lotus japonicus HOM05D007003 ORTHO05D008499 4.1e-90 336.3 458 46.1
GSVIVG01037627001 Vitis vinifera HOM05D007003 ORTHO05D008499 1.6e-89 334.3 459 45.8
arahy.Tifrunner.gnm1.ann1.422Z41 Arachis hypogaea HOM05D007003 ORTHO05D008499 3.5e-89 333.2 464 48.1
Gohir.A04G018400 Gossypium hirsutum HOM05D007003 ORTHO05D008499 7.7e-89 332.0 461 44.5
Sabra16G0288900 Salix brachista HOM05D007003 ORTHO05D008499 2.9e-88 330.1 458 44.3
Medtr5g092280 Medicago truncatula HOM05D007003 ORTHO05D008499 8.5e-88 328.6 457 45.3
Gohir.D05G367600 Gossypium hirsutum HOM05D007003 ORTHO05D008499 1.5e-87 327.8 461 44.0
Gorai.009G435200 Gossypium raimondii HOM05D007003 ORTHO05D008499 1.2e-86 324.7 457 45.1
MELO3C018208.2 Cucumis melo HOM05D007003 ORTHO05D008499 4.7e-86 322.8 453 43.9
Potri.001G423900 Populus trichocarpa HOM05D007003 ORTHO05D008499 6.1e-86 322.4 458 43.0
Manes.03G124400 Manihot esculenta HOM05D007003 ORTHO05D008499 1.0e-85 321.6 459 44.4
CsaV3_3G044430 Cucumis sativus L. HOM05D007003 ORTHO05D008499 3.7e-83 313.2 454 44.5
Sed0008518 Sechium edule HOM05D007003 ORTHO05D008499 3.1e-82 310.1 460 42.6
Eucgr.F00779 Eucalyptus grandis HOM05D007003 ORTHO05D008499 5.3e-82 309.3 456 42.3
EL10Ac4g07838 Beta vulgaris HOM05D007003 ORTHO05D008499 7.0e-82 308.9 460 41.3
AUR62015746 Chenopodium quinoa HOM05D007003 ORTHO05D008499 4.5e-81 306.2 460 42.6
AUR62020466 Chenopodium quinoa HOM05D007003 ORTHO05D008499 1.7e-80 304.3 455 43.1
PGR119G0071 Punica granatum HOM05D007003 ORTHO05D008499 9.4e-79 298.5 465 41.9
Cc05_g13800 Coffea canephora HOM05D007003 ORTHO05D008499 2.3e-77 293.9 459 41.4
THA.LOC104817663 Tarenaya hassleriana HOM05D007003 ORTHO05D008499 4.8e-75 286.2 456 41.7
Ah.04g165820 Amaranthus hybridus HOM05D007003 ORTHO05D008499 6.3e-75 285.8 454 40.1
TPR.G22251 Trifolium pratense HOM05D007003 ORTHO05D008499 8.3e-75 285.4 455 40.4
vmacro11731 Vaccinium macrocarpon HOM05D007003 ORTHO05D008499 1.4e-74 284.6 448 40.0
Eucgr.F00955 Eucalyptus grandis HOM05D007003 ORTHO05D008499 4.1e-74 283.1 440 41.6
Thhalv10013739m.g Eutrema salsugineum HOM05D007003 ORTHO05D008499 4.5e-73 279.6 458 40.4
Sp6g16850 Schrenkiella parvula HOM05D007003 ORTHO05D008499 1.3e-72 278.1 456 41.7
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 5.5e-71 272.7 557 36.1
AT5G54880 Arabidopsis thaliana HOM05D007003 ORTHO05D008499 1.6e-70 271.2 454 40.1
Nitab4.5_0001913g0010 Nicotiana tabacum HOM05D007003 ORTHO05D008499 3.6e-70 270.0 456 38.6
CARHR268220 Cardamine hirsuta HOM05D007003 ORTHO05D008499 4.7e-70 269.6 458 40.0
Aa31LG3G10810 Aethionema arabicum HOM05D007003 ORTHO05D008499 1.8e-69 267.7 455 40.0
Oeu007586.1 Olea europaea HOM05D007003 ORTHO05D008499 3.0e-69 266.9 451 39.7
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 3.0e-69 266.9 449 40.3
Solyc07g064480.1 Solanum lycopersicum HOM05D007003 ORTHO05D008499 3.0e-69 266.9 454 40.1
AL8G30340 Arabidopsis lyrata HOM05D007003 ORTHO05D008499 4.0e-69 266.5 460 38.0
Peaxi162Scf00964g00113 Petunia axillaris HOM05D007003 ORTHO05D008499 2.6e-68 263.8 461 40.6
Sopen07g032680 Solanum pennellii HOM05D007003 ORTHO05D008499 3.4e-68 263.5 453 39.5
Eucgr.F00790 Eucalyptus grandis HOM05D007003 ORTHO05D008499 4.4e-68 263.1 456 40.6
PGSC0003DMG400042605 Solanum tuberosum HOM05D007003 ORTHO05D008499 1.7e-67 261.2 453 40.6
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 2.2e-67 260.8 455 38.2
ATR0752G213 Amborella trichopoda HOM05D007003 ORTHO05D008499 2.2e-67 260.8 463 38.7
Aqoxy7G03837 Aquilegia oxysepala HOM05D007003 ORTHO05D008499 2.8e-67 260.4 456 39.3
Nitab4.5_0003812g0060 Nicotiana tabacum HOM05D007003 ORTHO05D008499 7.0e-66 255.8 456 37.9
Migut.M01775 Erythranthe guttata HOM05D007003 ORTHO05D008499 9.2e-66 255.4 458 37.3
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 1.6e-65 254.6 453 38.4
Ca_26481_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 2.7e-65 253.8 281 49.1
BcaB05g22167 Brassica carinata HOM05D007003 ORTHO05D008499 4.5e-65 253.1 453 38.6
Eucgr.L01323 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.0e-64 251.9 436 39.4
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 1.3e-64 251.5 453 38.0
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 1.3e-64 251.5 453 38.4
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 1.3e-64 251.5 453 38.0
Zm00001eb219850 Zea mays HOM05D007003 ORTHO05D008499 1.3e-64 251.5 486 36.2
Lj1P870T43 Lonicera japonica HOM05D007003 ORTHO05D008499 7.3e-63 245.7 453 37.1
Psat2g013360 Pisum sativum HOM05D007003 ORTHO05D008499 2.1e-62 244.2 452 38.3
Os03g0568600 Oryza sativa ssp. japonica HOM05D007003 ORTHO05D008499 2.3e-61 240.7 503 34.0
PSO675G0160 Papaver somniferum HOM05D007003 ORTHO05D008499 2.3e-61 240.7 460 37.0
Eucgr.F00879 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.0e-61 240.4 456 38.2
Lsat_1_v5_gn_5_6061 Lactuca sativa HOM05D007003 ORTHO05D008499 3.0e-61 240.4 453 36.6
DCAR_022556 Daucus carota HOM05D007003 ORTHO05D008499 5.2e-61 239.6 453 39.1
HPP92_012320 Vanilla planifolia HOM05D007003 ORTHO05D008499 5.2e-61 239.6 460 36.7
HPP92_012396 Vanilla planifolia HOM05D007003 ORTHO05D008499 5.2e-61 239.6 460 36.7
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 6.8e-61 239.2 458 38.4
Sc16g0006140 Simmondsia chinensis HOM05D007003 ORTHO05D008499 1.3e-59 235.0 420 36.9
Eucgr.F00922 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.8e-58 231.1 456 35.3
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 2.0e-57 227.6 457 34.8
Eucgr.F00913 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.5e-55 221.5 443 36.3
TPR.G17434 Trifolium pratense HOM05D007003 ORTHO05D008499 1.5e-55 221.5 194 56.7
Eucgr.F00897 Eucalyptus grandis HOM05D007003 ORTHO05D008499 9.5e-55 218.8 398 36.9
Eucgr.F00928 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.4e-53 214.9 409 36.7
MBI02_g22102_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 1.2e-52 211.8 317 43.5
SalBow8G3099 Salvia bowleyana HOM05D007003 ORTHO05D008499 1.3e-51 208.4 201 56.2
unitig_578.g16000 Utricularia gibba HOM05D007003 ORTHO05D008499 1.7e-51 208.0 455 33.8
Carub.0008s1518 Capsella rubella HOM05D007003 ORTHO05D008499 3.2e-50 203.8 193 55.4
SGA_v2.0_scaffold424G51477 Striga asiatica HOM05D007003 ORTHO05D008499 4.6e-49 199.9 451 35.3
Actinidia05100 Actinidia chinensis HOM05D007003 ORTHO05D008499 8.6e-48 195.7 186 58.1
Zm00001eb026290 Zea mays HOM05D007003 ORTHO05D008499 4.7e-46 189.9 165 57.0
BcaC03g14277 Brassica carinata HOM05D007003 ORTHO05D008499 7.1e-42 176.0 152 61.2
MD03G1204100 Malus domestica HOM05D007003 ORTHO05D008499 8.1e-38 162.5 155 56.8
CDE11G0477 Ceratophyllum demersum HOM05D007003 ORTHO05D008499 4.0e-37 160.2 406 28.8
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 1.3e-32 145.2 119 61.3
Ca_03331_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 4.3e-31 140.2 145 53.1
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 5.6e-31 139.8 354 32.5
CAN.G337.122 Capsicum annuum HOM05D007003 ORTHO05D008499 9.9e-28 129.0 77 81.8
AagrBONN_evm.TU.Sc2ySwM_362.2079 Anthoceros agrestis HOM05D007003 ORTHO05D008499 5.4e-26 123.2 156 45.5
TPR.G1180 Trifolium pratense HOM05D007003 ORTHO05D008499 1.3e-24 118.6 104 57.7
TPR.G1231 Trifolium pratense HOM05D007003 ORTHO05D008499 3.0e-24 117.5 116 52.6
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 3.9e-24 117.1 120 52.5
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 2.8e-22 110.9 125 51.2
Mapoly0032s0131 Marchantia polymorpha HOM05D007003 ORTHO05D008499 3.6e-22 110.5 158 42.4
CAN.G337.121 Capsicum annuum HOM05D007003 ORTHO05D008499 1.2e-20 105.5 92 54.3
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 7.6e-20 102.8 136 41.2
Medtr0590s0020 Medicago truncatula HOM05D007003 ORTHO05D263438 1.0e-16 92.4 166 34.9
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 3.0e-16 90.9 79 48.1
ClCG05G014280 Citrullus lanatus HOM05D007003 ORTHO05D008499 4.3e-15 87.0 55 69.1
Actinidia05099 Actinidia chinensis HOM05D001273 ORTHO05D000023 1.5e-12 78.6 55 67.3
PSO384G4400 Papaver somniferum HOM05D007273 ORTHO05D009230 1.6e-06 58.5 152 30.3
Haze_06347 Corylus avellana HOM05D007003 ORTHO05D008499 6.2e-06 56.6 42 66.7


User provided reference genes

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