Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p010925 Quercus lobata HOM05D003876 ORTHO05D004560 4.6e-141 504.6 265 100.0
QL08p010959 Quercus lobata HOM05D003876 ORTHO05D004560 2.8e-53 213.0 305 45.6
QL08p010874 Quercus lobata HOM05D003876 ORTHO05D004560 5.8e-51 205.3 111 92.8
QL08p010686 Quercus lobata HOM05D003876 ORTHO05D004560 2.8e-21 106.7 56 94.6
QL08p010640 Quercus lobata HOM05D003876 ORTHO05D004560 7.7e-19 98.6 59 79.7
QL10p036392 Quercus lobata HOM05D003876 ORTHO05D004560 1.0e-18 98.2 54 85.2
QL10p036338 Quercus lobata HOM05D003876 ORTHO05D004560 2.2e-18 97.1 66 71.2
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 8.5e-18 95.1 60 80.0
QL08p010650 Quercus lobata HOM05D003876 ORTHO05D004560 1.1e-17 94.7 54 81.5
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 2.5e-17 93.6 184 32.1
QL08p010601 Quercus lobata HOM05D003876 ORTHO05D004560 4.2e-17 92.8 55 80.0
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 3.9e-15 86.3 55 72.7
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 1.1e-14 84.7 51 76.5
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 6.3e-13 79.0 55 70.9
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 3.1e-12 76.6 55 69.1
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 2.6e-11 73.6 57 64.9
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 4.5e-11 72.8 55 65.5
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 5.9e-11 72.4 51 70.6
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 5.9e-11 72.4 139 36.0
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 1.3e-10 71.2 106 44.3
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 1.7e-10 70.9 95 46.3
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 2.9e-10 70.1 51 64.7
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 8.5e-10 68.6 106 43.4
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 1.1e-09 68.2 51 62.7
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 1.1e-09 68.2 96 42.7
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 1.4e-09 67.8 50 62.0
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 2.5e-09 67.0 90 48.9
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 2.5e-09 67.0 103 40.8
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 4.2e-09 66.2 74 52.7
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 5.5e-09 65.9 90 46.7
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 7.2e-09 65.5 106 43.4
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 7.2e-09 65.5 55 60.0
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 1.2e-08 64.7 51 58.8
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 2.1e-08 63.9 50 66.0
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 3.6e-08 63.2 54 55.6
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 4.7e-08 62.8 82 47.6
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 4.7e-08 62.8 92 42.4
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 1.0e-07 61.6 98 41.8
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.4e-07 61.2 52 57.7
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 2.3e-07 60.5 65 49.2
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 3.0e-07 60.1 55 56.4
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 3.0e-07 60.1 54 50.0
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 3.0e-07 60.1 79 41.8
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 3.9e-07 59.7 109 40.4
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 5.1e-07 59.3 52 55.8
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 5.1e-07 59.3 52 55.8
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 5.1e-07 59.3 55 54.5
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 5.1e-07 59.3 101 35.6
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 8.8e-07 58.5 55 52.7
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 8.8e-07 58.5 56 53.6
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 1.5e-06 57.8 56 50.0
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 2.0e-06 57.4 42 64.3
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 2.0e-06 57.4 55 54.5
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 2.0e-06 57.4 36 72.2
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 2.0e-06 57.4 58 51.7
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 2.0e-06 57.4 58 51.7
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 2.0e-06 57.4 58 51.7
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 2.0e-06 57.4 58 51.7
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 2.0e-06 57.4 58 51.7
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 2.6e-06 57.0 42 64.3
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 4.4e-06 56.2 42 57.1
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 7.4e-06 55.5 42 59.5
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 9.7e-06 55.1 36 77.8
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 9.7e-06 55.1 100 40.0
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 9.7e-06 55.1 100 40.0
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 9.7e-06 55.1 36 77.8


User provided reference genes

Program Settings