Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p010371 Quercus lobata HOM05D002079 ORTHO05D002437 4.7e-55 217.6 109 100.0
QL07p036689 Quercus lobata HOM05D002079 ORTHO05D002437 7.7e-42 173.7 134 71.6
QL03p035403 Quercus lobata HOM05D002079 ORTHO05D002437 1.2e-37 159.8 135 65.9
Haze_20183 Corylus avellana HOM05D002079 ORTHO05D002437 1.7e-33 146.0 136 57.4
Cfa020030 Carpinus fangiana HOM05D002079 ORTHO05D002437 5.0e-33 144.4 136 56.6
CANSAT64G0572 Cannabis sativa HOM05D002079 ORTHO05D002437 5.7e-29 131.0 128 56.2
Prupe.7G094500 Prunus persica HOM05D002079 ORTHO05D002437 7.5e-29 130.6 133 54.1
FvH4_6g20320 Fragaria vesca HOM05D002079 ORTHO05D002437 1.4e-27 126.3 129 51.9
FAN14G2006 Fragaria x ananassa HOM05D002079 ORTHO05D002437 1.4e-27 126.3 129 51.9
MD12G1040400 Malus domestica HOM05D002079 ORTHO05D002437 3.1e-27 125.2 130 51.5
FAN05G1251 Fragaria x ananassa HOM05D002079 ORTHO05D002437 7.0e-27 124.0 130 53.1
FAN05G5008 Fragaria x ananassa HOM05D002079 ORTHO05D002437 7.0e-27 124.0 130 53.1
FAN09G3835 Fragaria x ananassa HOM05D002079 ORTHO05D002437 1.6e-26 122.9 130 52.3
FAN02G2352 Fragaria x ananassa HOM05D002079 ORTHO05D002437 3.5e-26 121.7 130 52.3
RcHm_v2.0_Chr3g0475941 Rosa chinensis HOM05D002079 ORTHO05D002437 5.9e-26 120.9 133 49.6
Dinv31760 Davidia involucrata HOM05D002079 ORTHO05D002437 1.7e-25 119.4 97 64.9
Sed0003834 Sechium edule HOM05D002079 ORTHO05D002437 2.3e-25 119.0 90 68.9
ClCG01G015020 Citrullus lanatus HOM05D002079 ORTHO05D002437 1.9e-24 115.9 92 64.1
CsaV3_6G041120 Cucumis sativus L. HOM05D002079 ORTHO05D002437 1.9e-24 115.9 97 61.9
MD14G1039100 Malus domestica HOM05D002079 ORTHO05D002437 2.5e-24 115.5 138 48.6
Manes.09G045300 Manihot esculenta HOM05D002079 ORTHO05D002437 3.3e-24 115.2 96 61.5
Nn6g34687 Nelumbo nucifera HOM05D002079 ORTHO05D002437 3.3e-24 115.2 132 50.8
MELO3C024587.2 Cucumis melo HOM05D002079 ORTHO05D002437 5.5e-24 114.4 97 61.9
TWI77G0972 Tripterygium wilfordii HOM05D002079 ORTHO05D002437 1.2e-23 113.2 120 52.5
TAR623G1213 Trochodendron aralioides HOM05D002079 ORTHO05D002437 1.2e-23 113.2 129 51.2
arahy.Tifrunner.gnm1.ann1.6KTC2K Arachis hypogaea HOM05D002079 ORTHO05D002437 3.6e-23 111.7 137 48.2
Manes.08G033700 Manihot esculenta HOM05D002079 ORTHO05D002437 3.6e-23 111.7 94 61.7
arahy.Tifrunner.gnm1.ann1.BGF2TK Arachis hypogaea HOM05D002079 ORTHO05D002437 6.1e-23 110.9 137 48.2
PGR004G0448 Punica granatum HOM05D002079 ORTHO05D002437 6.1e-23 110.9 89 65.2
Hma1.2p1_0079F.1_g041820 Hydrangea macrophylla HOM05D002079 ORTHO05D002437 3.0e-22 108.6 132 48.5
CSS0050433 Camellia sinensis var. sinensis HOM05D002079 ORTHO05D002437 6.8e-22 107.5 101 54.5
Glyma.03G202100 Glycine max HOM05D002079 ORTHO05D002437 4.4e-21 104.8 129 46.5
Lalb_Chr20g0111361 Lupinus albus HOM05D002079 ORTHO05D002437 4.4e-21 104.8 107 54.2
Lj1g0024724 Lotus japonicus HOM05D002079 ORTHO05D002437 5.7e-21 104.4 132 48.5
Aqoxy1G00656 Aquilegia oxysepala HOM05D002079 ORTHO05D002437 7.5e-21 104.0 129 46.5
TWI74G0530 Tripterygium wilfordii HOM05D002079 ORTHO05D002437 9.8e-21 103.6 88 60.2
TPR.G35560 Trifolium pratense HOM05D002079 ORTHO05D002437 1.3e-20 103.2 129 48.8
PSO384G1841 Papaver somniferum HOM05D002079 ORTHO05D002437 1.7e-20 102.8 89 57.3
Phvul.001G195600 Phaseolus vulgaris HOM05D002079 ORTHO05D002437 1.7e-20 102.8 129 48.8
Ciclev10011110m.g Citrus clementina HOM05D002079 ORTHO05D002437 2.2e-20 102.4 120 49.2
Atru.chr8.1359 Acer truncatum HOM05D002079 ORTHO05D002437 3.7e-20 101.7 125 48.0
PSO339G0696 Papaver somniferum HOM05D002079 ORTHO05D002437 3.7e-20 101.7 89 57.3
Actinidia03888 Actinidia chinensis HOM05D002079 ORTHO05D002437 4.9e-20 101.3 125 48.8
Actinidia03998 Actinidia chinensis HOM05D002079 ORTHO05D002437 4.9e-20 101.3 125 48.8
Lalb_Chr25g0287991 Lupinus albus HOM05D002079 ORTHO05D002437 4.9e-20 101.3 143 44.8
Actinidia37747 Actinidia chinensis HOM05D002079 ORTHO05D002437 8.3e-20 100.5 125 48.8
Ca_09057_v3 Cicer arietinum L. HOM05D002079 ORTHO05D002437 1.8e-19 99.4 130 47.7
Glyma.19G200000 Glycine max HOM05D002079 ORTHO05D002437 1.8e-19 99.4 133 45.1
TAR636G1759 Trochodendron aralioides HOM05D002079 ORTHO05D002437 1.8e-19 99.4 126 48.4
Rhsim03G0064600 Rhododendron simsii HOM05D002079 ORTHO05D002437 2.4e-19 99.0 85 62.4
VMungo1383G0583 Vigna mungo HOM05D002079 ORTHO05D002437 2.4e-19 99.0 129 47.3
Sc22g0002880 Simmondsia chinensis HOM05D002079 ORTHO05D002437 9.2e-19 97.1 125 48.0
Potri.016G070200 Populus trichocarpa HOM05D002079 ORTHO05D002437 5.9e-18 94.4 89 60.7
HanXRQChr11g0347041 Helianthus annuus HOM05D002079 ORTHO05D002437 1.0e-17 93.6 94 59.6
Hund10873 Selenicereus undatus HOM05D002079 ORTHO05D002437 2.3e-17 92.4 127 47.2
Medtr7g106250 Medicago truncatula HOM05D002079 ORTHO05D002437 2.9e-17 92.0 125 47.2
Lsat_1_v5_gn_1_58180 Lactuca sativa HOM05D002079 ORTHO05D002437 5.0e-17 91.3 68 72.1
HPP92_027177 Vanilla planifolia HOM05D002079 ORTHO05D002437 6.6e-17 90.9 91 51.6
arahy.Tifrunner.gnm1.ann1.S3CVLX Arachis hypogaea HOM05D002079 ORTHO05D007614 8.6e-17 90.5 86 54.7
ECA248G3162 Erigeron canadensis HOM05D002079 ORTHO05D002437 8.6e-17 90.5 86 59.3
Lj1C1053G4 Lonicera japonica HOM05D002079 ORTHO05D002437 1.5e-16 89.7 92 54.3
Thecc.05G104500 Theobroma cacao HOM05D002079 ORTHO05D002437 1.9e-16 89.4 120 44.2
EL10Ac5g12969 Beta vulgaris HOM05D002079 ORTHO05D002437 3.3e-16 88.6 106 56.6
DCAR_020702 Daucus carota HOM05D002079 ORTHO05D002437 7.3e-16 87.4 88 54.5
Potri.006G203200 Populus trichocarpa HOM05D002079 ORTHO05D002437 7.3e-16 87.4 129 45.0
MBI17_g28778_MAGBIO Magnolia biondii HOM05D002079 ORTHO05D002437 9.5e-16 87.0 119 45.4
vmacro07477 Vaccinium macrocarpon HOM05D002079 ORTHO05D002437 9.5e-16 87.0 85 58.8
COL.COLO4_29572 Corchorus olitorius HOM05D002079 ORTHO05D002437 1.2e-15 86.7 120 43.3
Duzib093G1055 Durio zibethinus HOM05D002079 ORTHO05D002437 2.1e-15 85.9 120 43.3
Hund14952 Selenicereus undatus HOM05D002079 ORTHO05D002437 4.7e-15 84.7 91 53.8
Cpa.g.sc104.30 Carica papaya HOM05D002079 ORTHO05D002437 6.1e-15 84.3 115 48.7
Lalb_Chr02g0154461 Lupinus albus HOM05D002079 ORTHO05D002437 2.3e-14 82.4 97 51.5
CDE06G1521 Ceratophyllum demersum HOM05D002079 ORTHO05D002437 3.0e-14 82.0 67 56.7
AUR62030739 Chenopodium quinoa HOM05D002079 ORTHO05D002437 6.8e-14 80.9 137 42.3
AUR62036377 Chenopodium quinoa HOM05D002079 ORTHO05D002437 6.8e-14 80.9 137 42.3
TAR633G2613 Trochodendron aralioides HOM05D002079 ORTHO05D002437 8.9e-14 80.5 64 65.6
Ah.02g115430 Amaranthus hybridus HOM05D002079 ORTHO05D002437 1.2e-13 80.1 130 44.6
Gohir.A01G201300 Gossypium hirsutum HOM05D002079 ORTHO05D002437 1.2e-13 80.1 120 40.8
Gohir.D01G191200 Gossypium hirsutum HOM05D002079 ORTHO05D002437 1.2e-13 80.1 120 40.8
Gorai.002G235100 Gossypium raimondii HOM05D002079 ORTHO05D002437 1.2e-13 80.1 120 40.8
Sabra06G0156400 Salix brachista HOM05D002079 ORTHO05D002437 1.5e-13 79.7 125 47.2
Ah.12g059240 Amaranthus hybridus HOM05D002079 ORTHO05D002437 4.4e-13 78.2 90 54.4
THA.LOC104816623 Tarenaya hassleriana HOM05D002079 ORTHO05D002437 7.5e-13 77.4 96 47.9
Duzib106G1935 Durio zibethinus HOM05D002079 ORTHO05D002437 9.8e-13 77.0 97 45.4
Carub.0003s1099 Capsella rubella HOM05D002079 ORTHO05D002437 1.1e-11 73.6 95 45.3
Sp3g09900 Schrenkiella parvula HOM05D002079 ORTHO05D002437 1.1e-11 73.6 95 45.3
unitig_744.g24708 Utricularia gibba HOM05D002079 ORTHO05D002437 1.4e-11 73.2 90 52.2
Aa31LG3G5090 Aethionema arabicum HOM05D002079 ORTHO05D002437 1.9e-11 72.8 97 42.3
Thhalv10020090m.g Eutrema salsugineum HOM05D002079 ORTHO05D002437 4.1e-11 71.6 93 45.2
AL222U10020 Arabidopsis lyrata HOM05D002079 ORTHO05D002437 5.4e-11 71.2 95 43.2
AL3G23220 Arabidopsis lyrata HOM05D002079 ORTHO05D002437 5.4e-11 71.2 95 43.2
Gohir.A11G315800 Gossypium hirsutum HOM05D002079 ORTHO05D002437 5.4e-11 71.2 126 37.3
AT3G11670 Arabidopsis thaliana HOM05D002079 ORTHO05D002437 7.0e-11 70.9 102 43.1
CARHR086220 Cardamine hirsuta HOM05D002079 ORTHO05D002437 9.2e-11 70.5 95 43.2
Oeu028641.1 Olea europaea HOM05D002079 ORTHO05D002437 9.2e-11 70.5 109 47.7
MSTRG.19308 Avicennia marina HOM05D002079 ORTHO05D002437 1.2e-10 70.1 79 53.2
Gohir.D11G333000 Gossypium hirsutum HOM05D002079 ORTHO05D002437 1.6e-10 69.7 126 36.5
Gorai.007G364000 Gossypium raimondii HOM05D002079 ORTHO05D002437 1.6e-10 69.7 126 36.5
Ah.12g059220 Amaranthus hybridus HOM05D002079 ORTHO05D002437 4.6e-10 68.2 101 47.5
Cc06_g06570 Coffea canephora HOM05D002079 ORTHO05D002437 4.6e-10 68.2 89 44.9
BolC5t34288H Brassica oleracea HOM05D002079 ORTHO05D002437 1.0e-09 67.0 87 43.7
Sopen10g032410 Solanum pennellii HOM05D002079 ORTHO05D002437 1.0e-09 67.0 85 47.1
PGSC0003DMG400028233 Solanum tuberosum HOM05D002079 ORTHO05D002437 1.0e-09 67.0 85 47.1
Nitab4.5_0002844g0060 Nicotiana tabacum HOM05D002079 ORTHO05D002437 3.0e-09 65.5 56 62.5
Peaxi162Scf00086g01511 Petunia axillaris HOM05D002079 ORTHO05D002437 3.0e-09 65.5 84 50.0
SGA_v2.0_scaffold13G06640 Striga asiatica HOM05D002079 ORTHO05D002437 3.9e-09 65.1 95 46.3
Migut.J00701 Erythranthe guttata HOM05D002079 ORTHO05D002437 5.0e-09 64.7 99 43.4
Nitab4.5_0005037g0010 Nicotiana tabacum HOM05D002079 ORTHO05D002437 5.0e-09 64.7 104 40.4
BcaB06g25594 Brassica carinata HOM05D002079 ORTHO05D002437 6.6e-09 64.3 81 43.2
Nitab4.5_0004452g0030 Nicotiana tabacum HOM05D002079 ORTHO05D002437 3.3e-08 62.0 56 60.7
Nitab4.5_0005513g0050 Nicotiana tabacum HOM05D002079 ORTHO05D002437 5.6e-08 61.2 56 60.7
Solyc01g007100.3 Solanum lycopersicum HOM05D002079 ORTHO05D002437 7.3e-08 60.8 56 58.9
CDE08G1621 Ceratophyllum demersum HOM05D002079 ORTHO05D002437 9.5e-08 60.5 60 48.3
BcaC05g29343 Brassica carinata HOM05D002079 ORTHO05D002437 1.6e-07 59.7 68 45.6
C05p56250 Brassica napus HOM05D002079 ORTHO05D002437 1.6e-07 59.7 68 45.6
Ca_11697_v3 Cicer arietinum L. HOM05D002079 ORTHO05D002437 2.1e-07 59.3 98 45.9
Sopen01g003080 Solanum pennellii HOM05D002079 ORTHO05D002437 2.1e-07 59.3 56 57.1
Lj5g0023694 Lotus japonicus HOM05D002079 ORTHO05D002437 2.8e-07 58.9 113 42.5
PGSC0003DMG400021322 Solanum tuberosum HOM05D002079 ORTHO05D002437 2.8e-07 58.9 55 56.4
A05p37670 Brassica napus HOM05D002079 ORTHO05D002437 3.6e-07 58.5 68 44.1
BraA05t22563Z Brassica rapa HOM05D002079 ORTHO05D002437 3.6e-07 58.5 68 44.1
ATR0772G176 Amborella trichopoda HOM05D002079 ORTHO05D002437 3.1e-06 55.5 75 41.3


User provided reference genes

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