Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 1.4e-206 722.6 355 100.0
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 1.2e-176 623.2 335 90.1
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 2.0e-176 622.5 335 90.4
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 1.3e-170 603.2 335 85.4
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 2.3e-167 592.4 335 86.0
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 6.6e-167 590.9 335 84.2
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 5.6e-166 587.8 335 85.1
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 8.0e-165 583.9 335 84.8
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 1.1e-164 583.6 331 83.7
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 2.0e-163 579.3 335 82.7
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 4.4e-163 578.2 335 82.7
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 4.4e-163 578.2 335 82.7
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 5.8e-163 577.8 335 83.9
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 5.8e-163 577.8 335 82.4
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 8.3e-162 573.9 344 82.8
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 8.3e-162 573.9 335 82.1
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 8.3e-162 573.9 335 81.8
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 1.9e-161 572.8 335 81.5
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 4.1e-161 571.6 336 80.4
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 7.0e-161 570.9 333 82.9
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 1.6e-160 569.7 328 82.3
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 2.1e-160 569.3 339 80.8
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 3.5e-160 568.5 335 81.5
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 1.3e-159 566.6 337 81.3
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 1.7e-159 566.2 335 81.5
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 2.3e-159 565.8 335 82.7
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 2.3e-159 565.8 335 80.3
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 3.0e-159 565.5 335 81.5
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 1.1e-158 563.5 328 82.0
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 1.5e-158 563.1 335 81.5
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.9e-158 562.8 335 81.2
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 2.5e-158 562.4 335 79.1
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 2.5e-158 562.4 335 78.5
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 2.1e-157 559.3 328 82.0
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 3.6e-157 558.5 335 80.9
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 6.2e-157 557.8 335 80.9
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 6.8e-156 554.3 328 81.1
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 1.2e-155 553.5 335 78.8
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 1.2e-155 553.5 335 79.7
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 1.5e-155 553.1 335 80.3
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 2.6e-155 552.4 333 79.9
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 5.8e-155 551.2 335 80.3
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 2.9e-154 548.9 328 79.9
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 3.7e-154 548.5 335 76.7
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 1.1e-153 547.0 335 79.4
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 1.4e-153 546.6 335 77.3
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 1.9e-153 546.2 335 76.7
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 1.6e-152 543.1 335 75.8
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 2.1e-152 542.7 328 79.3
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 6.0e-152 541.2 335 76.4
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 1.0e-151 540.4 335 75.2
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 3.0e-151 538.9 335 75.5
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 8.6e-151 537.3 336 77.7
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 1.1e-150 537.0 336 77.4
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 1.1e-150 537.0 335 75.8
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 4.3e-150 535.0 334 76.3
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 9.5e-150 533.9 334 76.9
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 9.5e-150 533.9 330 78.2
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 9.5e-150 533.9 335 75.5
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 3.6e-149 531.9 334 77.5
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 3.6e-149 531.9 335 75.8
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 3.6e-149 531.9 335 75.8
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 3.6e-149 531.9 335 75.8
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 4.7e-149 531.6 335 75.2
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 6.2e-149 531.2 336 77.1
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 9.9e-147 523.9 335 73.4
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 2.9e-146 522.3 334 76.3
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 4.9e-146 521.5 335 73.1
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 4.9e-146 521.5 339 74.3
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 6.4e-146 521.2 334 74.3
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 1.4e-145 520.0 335 74.9
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 4.2e-145 518.5 332 75.0
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 1.6e-144 516.5 333 73.0
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 1.3e-143 513.5 336 73.8
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 3.0e-143 512.3 335 71.9
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 3.0e-143 512.3 330 75.2
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 6.6e-143 511.1 337 71.2
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 8.7e-143 510.8 332 73.5
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 1.2e-141 506.9 331 72.5
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 3.6e-141 505.4 335 72.8
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 3.6e-141 505.4 330 71.8
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 3.6e-141 505.4 335 72.2
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.8e-140 503.1 335 72.5
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 2.4e-140 502.7 332 72.6
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 2.4e-140 502.7 343 71.1
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 5.3e-140 501.5 309 75.4
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 9.0e-140 500.7 334 73.1
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 2.0e-139 499.6 327 72.2
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 8.4e-138 494.2 333 73.0
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 9.3e-137 490.7 355 71.0
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 1.6e-136 490.0 335 72.8
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 6.6e-135 484.6 334 68.9
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 1.1e-134 483.8 335 73.7
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 9.6e-134 480.7 328 68.3
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 8.1e-133 477.6 336 69.6
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 3.1e-132 475.7 335 68.1
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 5.3e-132 474.9 334 68.9
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 2.6e-131 472.6 329 68.1
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 4.5e-131 471.9 334 67.1
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 5.8e-131 471.5 339 67.6
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 1.6e-128 463.4 289 78.2
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 1.8e-127 459.9 328 67.1
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 1.9e-126 456.4 328 66.2
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 2.5e-126 456.1 333 65.5
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 2.5e-126 456.1 328 65.9
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 1.6e-125 453.4 333 65.2
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 5.3e-124 448.4 334 64.7
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 4.5e-123 445.3 329 65.0
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 2.2e-122 443.0 377 59.2
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 3.8e-122 442.2 329 64.7
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 3.2e-121 439.1 329 64.7
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 5.5e-121 438.3 334 67.4
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 6.0e-120 434.9 289 71.3
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 2.3e-119 433.0 332 63.3
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 2.3e-119 433.0 326 66.9
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 1.3e-117 427.2 313 64.9
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 1.4e-116 423.7 344 61.0
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.8e-116 423.3 263 75.3
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 6.5e-114 414.8 261 77.4
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 3.0e-95 352.8 383 50.1
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 2.0e-94 350.1 217 81.6
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 7.4e-94 348.2 341 52.8
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 7.0e-92 341.7 209 80.9
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 2.2e-90 336.7 312 57.1
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 5.0e-90 335.5 277 60.3
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 1.8e-87 327.0 344 52.0
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 8.8e-87 324.7 356 51.7
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 3.3e-86 322.8 347 49.3
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 2.6e-83 313.2 250 66.4
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 2.1e-80 303.5 189 74.1
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 9.1e-76 288.1 407 42.5
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 4.5e-75 285.8 279 53.8
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 4.8e-69 265.8 218 63.3
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 5.4e-60 235.7 189 57.1
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 4.5e-59 232.6 153 70.6
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 7.8e-51 205.3 328 41.5
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 2.3e-50 203.8 378 34.7
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 2.3e-47 193.7 144 63.9
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 3.4e-46 189.9 249 44.2
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 5.8e-46 189.1 134 69.4
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 8.3e-45 185.3 160 58.1
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 5.6e-41 172.6 138 60.9
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 5.6e-41 172.6 138 60.9
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 5.1e-34 149.4 109 71.6
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 1.2e-32 144.8 93 67.7
Glyma.02G261300 Glycine max HOM05D004754 ORTHO05D005566 2.1e-32 144.1 89 79.8
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 9.9e-30 135.2 152 48.7
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 4.6e-19 99.8 405 24.4
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 1.0e-18 98.6 66 72.7
Lju897C0T7 Lonicera japonica HOM05D004754 ORTHO05D005566 2.1e-16 90.9 66 69.7
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 1.5e-14 84.7 77 57.1
Potri.017G049500 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.2e-11 75.1 39 87.2
Lju897C2T5 Lonicera japonica HOM05D004754 ORTHO05D005566 1.5e-09 68.2 58 63.8
HPP92_027352 Vanilla planifolia HOM05D004754 ORTHO05D005566 2.1e-08 64.3 73 46.6
Potri.006G050600 Populus trichocarpa HOM05D004754 ORTHO05D005566 4.8e-08 63.2 51 66.7
DCAR_004803 Daucus carota HOM05D019807 ORTHO05D005566 1.4e-07 61.6 34 79.4


User provided reference genes

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