Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p008929 Quercus lobata HOM05D005599 ORTHO05D006921 5.8e-55 217.2 104 100.0
Cpa.g.sc65.146 Carica papaya HOM05D005599 ORTHO05D006921 7.9e-12 73.9 56 62.5
TWI79G1349 Tripterygium wilfordii HOM05D005599 ORTHO05D006921 1.4e-11 73.2 50 70.0
Prupe.1G325600 Prunus persica HOM05D005599 ORTHO05D006921 1.8e-11 72.8 50 70.0
Ciclev10017195m.g Citrus clementina HOM05D005599 ORTHO05D006921 2.3e-11 72.4 50 70.0
Duzib251G0393 Durio zibethinus HOM05D005599 ORTHO05D006921 2.3e-11 72.4 50 70.0
MD13G1024900 Malus domestica HOM05D005599 ORTHO05D006921 3.0e-11 72.0 50 70.0
MD16G1027400 Malus domestica HOM05D005599 ORTHO05D006921 3.0e-11 72.0 50 70.0
CiPaw.06G011400 Carya illinoinensis HOM05D005599 ORTHO05D006921 3.9e-11 71.6 50 68.0
Haze_10995 Corylus avellana HOM05D005599 ORTHO05D006921 3.9e-11 71.6 48 68.8
Gorai.005G161400 Gossypium raimondii HOM05D005599 ORTHO05D006921 3.9e-11 71.6 52 65.4
Manes.15G128100 Manihot esculenta HOM05D005599 ORTHO05D006921 3.9e-11 71.6 50 68.0
Atru.chr11.497 Acer truncatum HOM05D005599 ORTHO05D006921 6.7e-11 70.9 41 78.0
Aa31LG2G8490 Aethionema arabicum HOM05D005599 ORTHO05D006921 6.7e-11 70.9 52 65.4
CSS0001207 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 8.8e-11 70.5 44 72.7
AUR62014127 Chenopodium quinoa HOM05D005599 ORTHO05D006921 8.8e-11 70.5 50 68.0
Glyma.16G057902 Glycine max HOM05D005599 ORTHO05D006921 8.8e-11 70.5 50 66.0
Glyma.19G089600 Glycine max HOM05D005599 ORTHO05D006921 8.8e-11 70.5 50 66.0
Oeu045860.1 Olea europaea HOM05D005599 ORTHO05D006921 8.8e-11 70.5 43 76.7
EL10Ac9g21851 Beta vulgaris HOM05D005599 ORTHO05D006921 1.1e-10 70.1 50 68.0
CSS0007655 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 1.1e-10 70.1 42 78.6
CSS0037826 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 1.1e-10 70.1 42 78.6
AUR62032768 Chenopodium quinoa HOM05D005599 ORTHO05D006921 1.1e-10 70.1 50 68.0
Gohir.A03G120800 Gossypium hirsutum HOM05D005599 ORTHO05D006921 1.1e-10 70.1 50 66.0
Potri.010G112300 Populus trichocarpa HOM05D005599 ORTHO05D006921 1.1e-10 70.1 50 70.0
QL01p001565 Quercus lobata HOM05D005599 ORTHO05D006921 1.1e-10 70.1 41 80.5
Hund09673 Selenicereus undatus HOM05D005599 ORTHO05D006921 1.1e-10 70.1 50 68.0
arahy.Tifrunner.gnm1.ann1.UU8CC3 Arachis hypogaea HOM05D005599 ORTHO05D006921 1.5e-10 69.7 50 68.0
arahy.Tifrunner.gnm1.ann1.XM49AS Arachis hypogaea HOM05D005599 ORTHO05D006921 1.5e-10 69.7 50 68.0
Cfa008617 Carpinus fangiana HOM05D005599 ORTHO05D006921 1.5e-10 69.7 50 66.0
ClCG07G006660 Citrullus lanatus HOM05D005599 ORTHO05D006921 1.5e-10 69.7 50 68.0
COL.COLO4_20491 Corchorus olitorius HOM05D005599 ORTHO05D006921 1.5e-10 69.7 41 78.0
MELO3C018308.2 Cucumis melo HOM05D005599 ORTHO05D006921 1.5e-10 69.7 50 68.0
arahy.Tifrunner.gnm1.ann1.5G098T Arachis hypogaea HOM05D005599 ORTHO05D006921 2.0e-10 69.3 43 72.1
FvH4_4g19980 Fragaria vesca HOM05D005599 ORTHO05D006921 2.5e-10 68.9 41 78.0
FAN05G3069 Fragaria x ananassa HOM05D005599 ORTHO05D006921 2.5e-10 68.9 41 78.0
FAN12G4015 Fragaria x ananassa HOM05D005599 ORTHO05D006921 2.5e-10 68.9 41 78.0
FAN25G3147 Fragaria x ananassa HOM05D005599 ORTHO05D006921 2.5e-10 68.9 41 78.0
Medtr1g069405 Medicago truncatula HOM05D005599 ORTHO05D006921 2.5e-10 68.9 50 64.0
Psat6g049960 Pisum sativum HOM05D005599 ORTHO05D006921 2.5e-10 68.9 50 64.0
RcHm_v2.0_Chr4g0425701 Rosa chinensis HOM05D005599 ORTHO05D006921 2.5e-10 68.9 41 78.0
Sed0011013 Sechium edule HOM05D005599 ORTHO05D006921 2.5e-10 68.9 43 72.1
CsaV3_5G013870 Cucumis sativus L. HOM05D005599 ORTHO05D006921 3.3e-10 68.6 50 66.0
Potri.008G129900 Populus trichocarpa HOM05D005599 ORTHO05D006921 3.3e-10 68.6 50 68.0
Sed0017153 Sechium edule HOM05D005599 ORTHO05D006921 3.3e-10 68.6 41 75.6
Ca_21512_v3 Cicer arietinum L. HOM05D005599 ORTHO05D006921 4.3e-10 68.2 50 62.0
Sabra10G0082600 Salix brachista HOM05D005599 ORTHO05D006921 4.3e-10 68.2 43 76.7
Thecc.02G282300 Theobroma cacao HOM05D005599 ORTHO05D006921 4.3e-10 68.2 41 75.6
arahy.Tifrunner.gnm1.ann1.5FG4B2 Arachis hypogaea HOM05D005599 ORTHO05D006921 5.7e-10 67.8 42 71.4
BraA09t41538Z Brassica rapa HOM05D005599 ORTHO05D006921 5.7e-10 67.8 55 60.0
AUR62042684 Chenopodium quinoa HOM05D005599 ORTHO05D006921 5.7e-10 67.8 45 71.1
Eucgr.B01298 Eucalyptus grandis HOM05D005599 ORTHO05D006921 5.7e-10 67.8 41 73.2
FAN07G1516 Fragaria x ananassa HOM05D005599 ORTHO05D006921 5.7e-10 67.8 41 78.0
Gohir.D02G144100 Gossypium hirsutum HOM05D005599 ORTHO05D006921 5.7e-10 67.8 50 64.0
Sabra08G0098500 Salix brachista HOM05D005599 ORTHO05D006921 5.7e-10 67.8 43 76.7
TPR.G19139 Trifolium pratense HOM05D005599 ORTHO05D006921 5.7e-10 67.8 50 62.0
BolC8t52072H Brassica oleracea HOM05D005599 ORTHO05D006921 7.4e-10 67.4 43 67.4
TAR622G1178 Trochodendron aralioides HOM05D005599 ORTHO05D006921 7.4e-10 67.4 50 64.0
GSVIVG01011752001 Vitis vinifera HOM05D005599 ORTHO05D006921 7.4e-10 67.4 41 75.6
Ah.04g163140 Amaranthus hybridus HOM05D005599 ORTHO05D006921 1.7e-09 66.2 41 73.2
Oeu003383.1 Olea europaea HOM05D005599 ORTHO05D006921 1.7e-09 66.2 43 72.1
Dinv07654 Davidia involucrata HOM05D005599 ORTHO05D006921 2.2e-09 65.9 50 64.0
Dinv14427 Davidia involucrata HOM05D005599 ORTHO05D006921 2.2e-09 65.9 50 64.0
Phvul.001G094900 Phaseolus vulgaris HOM05D005599 ORTHO05D006921 2.2e-09 65.9 41 70.7
RcHm_v2.0_Chr4g0441361 Rosa chinensis HOM05D005599 ORTHO05D006921 2.8e-09 65.5 41 75.6
Sc14g0007100 Simmondsia chinensis HOM05D005599 ORTHO05D006921 2.8e-09 65.5 41 73.2
THA.LOC104823847 Tarenaya hassleriana HOM05D005599 ORTHO05D006921 2.8e-09 65.5 41 75.6
vmacro14440 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 2.8e-09 65.5 50 66.0
Rhsim09G0066400 Rhododendron simsii HOM05D005599 ORTHO05D006921 3.7e-09 65.1 50 64.0
vmacro00414 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 3.7e-09 65.1 50 66.0
AL1G27050 Arabidopsis lyrata HOM05D005599 ORTHO05D006921 6.3e-09 64.3 41 65.9
A09p61660 Brassica napus HOM05D005599 ORTHO05D006921 6.3e-09 64.3 41 65.9
Carub.0001s1476 Capsella rubella HOM05D005599 ORTHO05D006921 6.3e-09 64.3 41 65.9
CARHR015530 Cardamine hirsuta HOM05D005599 ORTHO05D006921 6.3e-09 64.3 41 65.9
Thhalv10009435m.g Eutrema salsugineum HOM05D005599 ORTHO05D006921 6.3e-09 64.3 41 65.9
MBI16_g23758_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 6.3e-09 64.3 50 64.0
Cc11_g08600 Coffea canephora HOM05D005599 ORTHO05D006921 8.2e-09 63.9 50 62.0
HanXRQChr08g0212121 Helianthus annuus HOM05D005599 ORTHO05D006921 8.2e-09 63.9 52 61.5
Hma1.2p1_0096F.1_g047800 Hydrangea macrophylla HOM05D005599 ORTHO05D006921 8.2e-09 63.9 50 62.0
Lj6g0000510 Lotus japonicus HOM05D005599 ORTHO05D006921 8.2e-09 63.9 50 62.0
HanXRQChr12g0364441 Helianthus annuus HOM05D005599 ORTHO05D006921 1.1e-08 63.5 52 61.5
Nitab4.5_0000426g0280 Nicotiana tabacum HOM05D005599 ORTHO05D006921 1.1e-08 63.5 50 60.0
Nitab4.5_0004230g0050 Nicotiana tabacum HOM05D005599 ORTHO05D006921 1.1e-08 63.5 50 60.0
HPP92_003868 Vanilla planifolia HOM05D005599 ORTHO05D006921 1.1e-08 63.5 50 64.0
HPP92_003899 Vanilla planifolia HOM05D005599 ORTHO05D006921 1.1e-08 63.5 50 64.0
Zm00001eb161570 Zea mays HOM05D005599 ORTHO05D006921 1.1e-08 63.5 50 64.0
AT1G14990 Arabidopsis thaliana HOM05D005599 ORTHO05D006921 1.4e-08 63.2 41 63.4
Lsat_1_v5_gn_9_79661 Lactuca sativa HOM05D005599 ORTHO05D006921 1.4e-08 63.2 41 70.7
Peaxi162Scf00253g01125 Petunia axillaris HOM05D005599 ORTHO05D006921 1.4e-08 63.2 50 62.0
PGR004G1422 Punica granatum HOM05D005599 ORTHO05D006921 1.4e-08 63.2 41 68.3
C08p45240 Brassica napus HOM05D005599 ORTHO05D006921 1.8e-08 62.8 42 64.3
Lalb_Chr08g0237401 Lupinus albus HOM05D005599 ORTHO05D006921 1.8e-08 62.8 41 70.7
ATR0796G095 Amborella trichopoda HOM05D005599 ORTHO05D006921 2.4e-08 62.4 50 64.0
CAN.G1244.3 Capsicum annuum HOM05D005599 ORTHO05D006921 2.4e-08 62.4 41 70.7
DCAR_023596 Daucus carota HOM05D005599 ORTHO05D006921 2.4e-08 62.4 50 60.0
Aqoxy1G03319 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 3.1e-08 62.0 44 65.9
ECA236G1659 Erigeron canadensis HOM05D005599 ORTHO05D006921 3.1e-08 62.0 41 70.7
Os01g0606050 Oryza sativa ssp. japonica HOM05D005599 ORTHO05D006921 3.1e-08 62.0 50 62.0
Sp1g13380 Schrenkiella parvula HOM05D005599 ORTHO05D006921 3.1e-08 62.0 41 63.4
SGA_v2.0_scaffold154G37132 Striga asiatica HOM05D005599 ORTHO05D006921 3.1e-08 62.0 41 70.7
SGA_v2.0_scaffold181G39695 Striga asiatica HOM05D005599 ORTHO05D006921 3.1e-08 62.0 41 70.7
Aqoxy3G01068 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 5.3e-08 61.2 50 60.0
BraA06t24281Z Brassica rapa HOM05D005599 ORTHO05D006921 5.3e-08 61.2 42 64.3
Migut.M00054 Erythranthe guttata HOM05D005599 ORTHO05D006921 5.3e-08 61.2 40 72.5
SGA_v2.0_scaffold2G00929 Striga asiatica HOM05D005599 ORTHO05D006921 5.3e-08 61.2 42 69.0
unitig_899.g15269 Utricularia gibba HOM05D005599 ORTHO05D006921 5.3e-08 61.2 42 66.7
BcaC07g38244 Brassica carinata HOM05D005599 ORTHO05D006921 6.9e-08 60.8 42 61.9
C08p09930 Brassica napus HOM05D005599 ORTHO05D006921 6.9e-08 60.8 42 61.9
BolC8t48670H Brassica oleracea HOM05D005599 ORTHO05D006921 6.9e-08 60.8 42 61.9
Eucgr.E01608 Eucalyptus grandis HOM05D005599 ORTHO05D006921 6.9e-08 60.8 41 65.9
BcaB02g06563 Brassica carinata HOM05D005599 ORTHO05D006921 9.1e-08 60.5 41 63.4
PSO170G3715 Papaver somniferum HOM05D005599 ORTHO05D006921 9.1e-08 60.5 41 68.3
PSO782G0484 Papaver somniferum HOM05D005599 ORTHO05D006921 9.1e-08 60.5 41 68.3
Solyc04g007700.3 Solanum lycopersicum HOM05D005599 ORTHO05D006921 9.1e-08 60.5 50 58.0
Sopen04g002790 Solanum pennellii HOM05D005599 ORTHO05D006921 9.1e-08 60.5 50 58.0
SGA_v2.0_scaffold6G03128 Striga asiatica HOM05D005599 ORTHO05D006921 1.2e-07 60.1 41 68.3
A06p11010 Brassica napus HOM05D005599 ORTHO05D006921 1.5e-07 59.7 41 63.4
C05p13060 Brassica napus HOM05D005599 ORTHO05D006921 1.5e-07 59.7 41 63.4
SGA_v2.0_scaffold135G34854 Striga asiatica HOM05D005599 ORTHO05D006921 1.5e-07 59.7 41 68.3
VMungo0464G0261 Vigna mungo HOM05D005599 ORTHO05D006921 2.0e-07 59.3 41 65.9
CDE07G0704 Ceratophyllum demersum HOM05D005599 ORTHO05D006921 2.6e-07 58.9 50 60.0
PGSC0003DMG400005984 Solanum tuberosum HOM05D005599 ORTHO05D006921 2.6e-07 58.9 50 58.0
MSTRG.6631 Avicennia marina HOM05D005599 ORTHO05D006921 3.4e-07 58.5 44 65.9
DCAR_026778 Daucus carota HOM05D005599 ORTHO05D006921 5.9e-07 57.8 50 54.0
BcaC05g25431 Brassica carinata HOM05D005599 ORTHO05D006921 7.7e-07 57.4 41 61.0
BolC5t30050H Brassica oleracea HOM05D005599 ORTHO05D006921 1.7e-06 56.2 39 64.1
CANSAT11G1373 Cannabis sativa HOM05D005599 ORTHO05D006921 2.2e-06 55.8 41 65.9
DCAR_032107 Daucus carota HOM05D005599 ORTHO05D006921 2.2e-06 55.8 49 49.0
SEGI_33740 Sequoiadendron giganteum HOM05D005599 ORTHO05D006921 2.9e-06 55.5 41 63.4


User provided reference genes

Program Settings