Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p008692 Quercus lobata HOM05D001235 ORTHO05D338142 1.0e-37 159.5 73 100.0
QL06p027955 Quercus lobata HOM05D001235 ORTHO05D005684 7.5e-09 63.5 41 75.6
Cfa008685 Carpinus fangiana HOM05D001235 ORTHO05D005684 2.2e-08 62.0 41 73.2
Haze_11704 Corylus avellana HOM05D001235 ORTHO05D005684 2.2e-08 62.0 41 73.2
CANSAT78G1591 Cannabis sativa HOM05D001235 ORTHO05D005684 2.9e-08 61.6 40 75.0
Cpa.g.sc502.2 Carica papaya HOM05D001235 ORTHO05D005684 6.4e-08 60.5 40 72.5
PGR142G1880 Punica granatum HOM05D001235 ORTHO05D005684 8.3e-08 60.1 41 68.3
Atru.chr3.1828 Acer truncatum HOM05D001235 ORTHO05D005684 1.1e-07 59.7 40 75.0
CSS0015752 Camellia sinensis var. sinensis HOM05D001235 ORTHO05D005684 1.1e-07 59.7 41 70.7
CSS0039330 Camellia sinensis var. sinensis HOM05D001235 ORTHO05D005684 1.1e-07 59.7 41 70.7
TWI73G0237 Tripterygium wilfordii HOM05D001235 ORTHO05D005684 1.1e-07 59.7 41 68.3
MD04G1025900 Malus domestica HOM05D001235 ORTHO05D005684 1.4e-07 59.3 40 70.0
Oeu001997.1 Olea europaea HOM05D001235 ORTHO05D005684 1.9e-07 58.9 40 70.0
Sabra14G0111700 Salix brachista HOM05D001235 ORTHO05D005684 1.9e-07 58.9 41 68.3
TAR362G0786 Trochodendron aralioides HOM05D001235 ORTHO05D005684 1.9e-07 58.9 40 72.5
Duzib151G0601 Durio zibethinus HOM05D001235 ORTHO05D005684 2.4e-07 58.5 40 72.5
Duzib212G0549 Durio zibethinus HOM05D001235 ORTHO05D005684 2.4e-07 58.5 40 72.5
Thecc.04G188100 Theobroma cacao HOM05D001235 ORTHO05D005684 2.4e-07 58.5 40 72.5
Potri.002G234500 Populus trichocarpa HOM05D001235 ORTHO05D005684 3.2e-07 58.2 41 68.3
Sabra02G0178900 Salix brachista HOM05D001235 ORTHO05D005684 3.2e-07 58.2 41 68.3
DCAR_027478 Daucus carota HOM05D001235 ORTHO05D005684 4.1e-07 57.8 40 70.0
Gohir.A10G133100 Gossypium hirsutum HOM05D001235 ORTHO05D005684 4.1e-07 57.8 40 70.0
Gohir.D10G133800 Gossypium hirsutum HOM05D001235 ORTHO05D005684 4.1e-07 57.8 40 70.0
Gorai.011G147600 Gossypium raimondii HOM05D001235 ORTHO05D005684 4.1e-07 57.8 40 70.0
Manes.05G194300 Manihot esculenta HOM05D001235 ORTHO05D005684 4.1e-07 57.8 41 70.7
Nn1g08260 Nelumbo nucifera HOM05D001235 ORTHO05D005684 4.1e-07 57.8 36 77.8
CDE04G0849 Ceratophyllum demersum HOM05D001235 ORTHO05D005684 5.4e-07 57.4 40 70.0
COL.COLO4_08688 Corchorus olitorius HOM05D001235 ORTHO05D005684 5.4e-07 57.4 40 70.0
MELO3C017735.2 Cucumis melo HOM05D001235 ORTHO05D005684 5.4e-07 57.4 40 67.5
CsaV3_4G003110 Cucumis sativus L. HOM05D001235 ORTHO05D005684 5.4e-07 57.4 40 67.5
Eucgr.H00494 Eucalyptus grandis HOM05D001235 ORTHO05D005684 5.4e-07 57.4 41 65.9
Sed0023516 Sechium edule HOM05D001235 ORTHO05D005684 5.4e-07 57.4 40 67.5
Lj6C311G3 Lonicera japonica HOM05D001235 ORTHO05D005684 7.0e-07 57.0 40 67.5
Sc19g0007540 Simmondsia chinensis HOM05D001235 ORTHO05D005684 7.0e-07 57.0 40 70.0
AUR62020915 Chenopodium quinoa HOM05D001235 ORTHO05D005684 9.2e-07 56.6 40 67.5
Nitab4.5_0001693g0060 Nicotiana tabacum HOM05D001235 ORTHO05D005684 9.2e-07 56.6 35 77.1
Nitab4.5_0012294g0010 Nicotiana tabacum HOM05D001235 ORTHO05D005684 9.2e-07 56.6 35 77.1
Peaxi162Scf00286g00547 Petunia axillaris HOM05D001235 ORTHO05D005684 9.2e-07 56.6 35 77.1
Sopen09g035960 Solanum pennellii HOM05D001235 ORTHO05D005684 9.2e-07 56.6 35 77.1
PGSC0003DMG400016613 Solanum tuberosum HOM05D001235 ORTHO05D005684 9.2e-07 56.6 35 77.1
vmacro20797 Vaccinium macrocarpon HOM05D001235 ORTHO05D005684 9.2e-07 56.6 40 65.0
EL10Ac3g07409 Beta vulgaris HOM05D001235 ORTHO05D005684 1.2e-06 56.2 40 67.5
CiPaw.01G110000 Carya illinoinensis HOM05D001235 ORTHO05D005684 1.2e-06 56.2 40 65.0
AUR62018504 Chenopodium quinoa HOM05D001235 ORTHO05D005684 1.2e-06 56.2 40 67.5
Gohir.A09G209000 Gossypium hirsutum HOM05D001235 ORTHO05D005684 1.2e-06 56.2 40 67.5
Sed0003584 Sechium edule HOM05D001235 ORTHO05D005684 1.2e-06 56.2 40 65.0
GSVIVG01031639001 Vitis vinifera HOM05D001235 ORTHO05D005684 1.2e-06 56.2 40 67.5
CAN.G681.26 Capsicum annuum HOM05D001235 ORTHO05D005684 1.6e-06 55.8 35 74.3
FAN07G2568 Fragaria x ananassa HOM05D001235 ORTHO05D005684 1.6e-06 55.8 41 65.9
Gohir.D09G202400 Gossypium hirsutum HOM05D001235 ORTHO05D005684 1.6e-06 55.8 35 77.1
Gorai.006G226300 Gossypium raimondii HOM05D001235 ORTHO05D005684 1.6e-06 55.8 40 67.5
Lj5g0010068 Lotus japonicus HOM05D001235 ORTHO05D005684 1.6e-06 55.8 41 63.4
Prupe.1G175200 Prunus persica HOM05D001235 ORTHO05D005684 1.6e-06 55.8 41 65.9
Solyc09g098040.3 Solanum lycopersicum HOM05D001235 ORTHO05D005684 1.6e-06 55.8 35 74.3
SGA_v2.0_scaffold28G12047 Striga asiatica HOM05D001235 ORTHO05D005684 1.6e-06 55.8 40 65.0
Migut.N03329 Erythranthe guttata HOM05D001235 ORTHO05D005684 2.0e-06 55.5 40 67.5
FvH4_4g12510 Fragaria vesca HOM05D001235 ORTHO05D005684 2.0e-06 55.5 40 67.5
FAN12G0235 Fragaria x ananassa HOM05D001235 ORTHO05D005684 2.0e-06 55.5 40 67.5
FAN17G0427 Fragaria x ananassa HOM05D001235 ORTHO05D005684 2.0e-06 55.5 40 67.5
FAN22G1075 Fragaria x ananassa HOM05D001235 ORTHO05D005684 2.0e-06 55.5 40 67.5
RcHm_v2.0_Chr4g0411331 Rosa chinensis HOM05D001235 ORTHO05D005684 2.0e-06 55.5 40 67.5
Actinidia35919 Actinidia chinensis HOM05D001235 ORTHO05D005684 2.7e-06 55.1 41 61.0
Ah.04g149690 Amaranthus hybridus HOM05D001235 ORTHO05D005684 2.7e-06 55.1 40 65.0
SalBow6G1240 Salvia bowleyana HOM05D001235 ORTHO05D005684 2.7e-06 55.1 40 60.0
Lalb_Chr02g0144531 Lupinus albus HOM05D001235 ORTHO05D005684 3.5e-06 54.7 40 65.0
Potri.014G147900 Populus trichocarpa HOM05D001235 ORTHO05D005684 3.5e-06 54.7 41 63.4
Rhsim01G0114000 Rhododendron simsii HOM05D001235 ORTHO05D005684 3.5e-06 54.7 40 62.5
ClCG07G015490 Citrullus lanatus HOM05D001235 ORTHO05D005684 4.6e-06 54.3 40 65.0
Cc03_g10000 Coffea canephora HOM05D001235 ORTHO05D005684 4.6e-06 54.3 40 65.0
PSO357G0146 Papaver somniferum HOM05D001235 ORTHO05D005684 4.6e-06 54.3 40 65.0
Dinv13678 Davidia involucrata HOM05D001235 ORTHO05D005684 6.0e-06 53.9 40 65.0
Medtr6g093240 Medicago truncatula HOM05D001235 ORTHO05D005684 6.0e-06 53.9 40 62.5
Ca_11427_v3 Cicer arietinum L. HOM05D001235 ORTHO05D005684 7.8e-06 53.5 40 62.5
Ca_29863_v3 Cicer arietinum L. HOM05D001235 ORTHO05D005684 7.8e-06 53.5 40 62.5


User provided reference genes

Program Settings