Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 2.6e-219 765.0 368 100.0
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 1.2e-152 543.5 295 87.1
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 4.7e-152 541.6 295 87.5
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 2.9e-149 532.3 295 84.1
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 3.2e-148 528.9 291 84.9
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 7.8e-147 524.2 291 83.5
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 1.0e-146 523.9 295 83.1
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.3e-146 522.7 291 85.2
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.3e-146 522.7 291 85.2
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.1e-146 521.5 291 84.9
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.1e-146 521.5 291 84.9
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 2.5e-145 519.2 291 82.5
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 3.3e-145 518.8 291 83.8
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 3.3e-145 518.8 307 80.8
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 9.6e-145 517.3 291 83.2
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 9.6e-145 517.3 291 82.8
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 1.3e-144 516.9 306 79.7
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 2.1e-144 516.2 306 80.1
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 2.1e-144 516.2 306 79.1
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 2.1e-144 516.2 292 83.9
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.6e-144 515.4 307 80.1
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 3.6e-144 515.4 290 82.4
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 4.8e-144 515.0 291 81.1
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 4.8e-144 515.0 291 81.1
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 1.1e-143 513.8 296 80.4
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 1.4e-143 513.5 291 82.1
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 2.4e-143 512.7 294 80.6
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 3.1e-143 512.3 291 80.1
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 4.0e-143 511.9 297 81.8
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 9.0e-143 510.8 290 82.1
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 1.2e-142 510.4 290 82.1
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 1.5e-142 510.0 307 79.5
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 2.0e-142 509.6 290 81.4
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 4.5e-142 508.4 291 81.4
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 5.8e-142 508.1 325 73.2
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 7.6e-142 507.7 290 82.4
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 7.6e-142 507.7 290 82.1
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 1.3e-141 506.9 295 80.3
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 1.3e-141 506.9 291 80.1
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 2.2e-141 506.1 305 79.3
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 8.4e-141 504.2 291 80.1
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.9e-140 503.1 297 77.1
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.9e-140 503.1 291 79.7
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 2.4e-140 502.7 290 81.7
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 3.2e-140 502.3 291 79.7
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 5.4e-140 501.5 292 79.1
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 7.1e-140 501.1 291 80.1
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.6e-139 500.0 291 79.4
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 2.1e-139 499.6 291 81.1
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 2.7e-139 499.2 291 78.7
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 6.0e-139 498.0 290 81.0
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 6.0e-139 498.0 295 79.3
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 7.9e-139 497.7 291 78.0
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 7.9e-139 497.7 295 78.3
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 7.9e-139 497.7 295 78.3
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.8e-138 496.5 333 72.7
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 2.3e-138 496.1 307 78.2
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 2.3e-138 496.1 290 80.0
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 3.9e-138 495.4 304 77.0
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 3.9e-138 495.4 295 78.6
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 6.7e-138 494.6 326 73.0
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 8.7e-138 494.2 291 78.7
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.1e-137 493.8 297 76.8
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 1.1e-137 493.8 291 78.0
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 1.1e-137 493.8 291 78.0
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 1.9e-137 493.0 290 77.9
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 2.5e-137 492.7 291 78.0
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 4.3e-137 491.9 291 79.4
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 1.3e-136 490.3 290 78.3
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 1.3e-136 490.3 290 78.3
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 1.3e-136 490.3 290 78.3
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.6e-136 490.0 290 78.6
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 2.1e-136 489.6 290 78.3
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 1.8e-135 486.5 310 73.5
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 5.3e-135 485.0 308 73.7
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 9.0e-135 484.2 308 74.0
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.5e-134 483.4 290 80.0
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 2.6e-134 482.6 291 74.6
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 7.6e-134 481.1 295 76.9
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.3e-133 480.3 308 73.1
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 1.3e-133 480.3 293 75.4
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 1.1e-132 477.2 301 76.4
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 1.9e-132 476.5 291 75.3
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 2.1e-131 473.0 312 72.1
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 3.5e-131 472.2 301 75.4
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 7.9e-131 471.1 303 75.2
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 1.0e-130 470.7 301 74.8
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 1.0e-130 470.7 292 73.3
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 2.3e-130 469.5 302 74.5
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 3.9e-130 468.8 290 74.8
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 5.1e-130 468.4 302 74.5
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 8.7e-130 467.6 302 74.5
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 8.7e-130 467.6 302 74.5
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 1.1e-129 467.2 295 75.9
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 1.5e-129 466.8 302 73.8
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 7.4e-129 464.5 295 72.5
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.1e-128 463.0 322 68.9
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 2.1e-128 463.0 310 72.3
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 2.8e-128 462.6 290 74.1
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 2.8e-128 462.6 296 72.0
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 1.4e-127 460.3 299 72.9
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 5.3e-127 458.4 292 75.7
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 1.2e-126 457.2 268 78.7
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 1.2e-126 457.2 292 75.7
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 8.4e-125 451.1 301 71.4
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 5.5e-124 448.4 290 73.8
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 7.1e-124 448.0 295 70.2
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.8e-122 443.4 288 71.5
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 1.1e-121 440.7 291 70.1
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 4.3e-121 438.7 291 72.9
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 4.3e-121 438.7 294 71.8
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 4.3e-121 438.7 296 68.9
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 6.3e-120 434.9 238 88.2
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 3.1e-119 432.6 310 63.2
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 4.5e-118 428.7 290 66.9
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 5.0e-117 425.2 302 70.2
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 1.6e-115 420.2 315 66.0
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 2.3e-114 416.4 306 67.6
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 1.9e-113 413.3 292 67.1
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 7.4e-113 411.4 245 80.4
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 2.6e-110 402.9 246 76.4
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 1.1e-108 397.5 238 78.6
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 2.7e-99 366.3 305 60.3
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 1.7e-88 330.5 196 79.1
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 1.3e-85 320.9 296 51.7
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 1.2e-81 307.8 301 47.8
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 5.7e-81 305.4 292 49.7
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 1.1e-79 301.2 279 57.3
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 4.4e-73 279.3 174 73.0
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 1.2e-70 271.2 165 80.0
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 3.5e-54 216.5 175 64.0
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 1.1e-52 211.5 157 67.5
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 9.5e-52 208.4 124 75.0
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 1.6e-51 207.6 128 72.7
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 1.6e-51 207.6 128 72.7
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 1.6e-51 207.6 230 50.9
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 5.4e-47 192.6 102 83.3
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 2.7e-46 190.3 175 53.1
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.5e-44 184.5 108 80.6
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 2.9e-40 170.2 108 69.4
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 9.6e-36 155.2 165 49.7
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-35 154.8 328 31.1
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 3.2e-31 140.2 97 72.2
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 9.3e-31 138.7 78 78.2
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 9.3e-31 138.7 78 78.2
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 2.1e-27 127.5 98 65.3
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 3.6e-27 126.7 85 67.1
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 1.9e-20 104.4 55 78.2
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 3.1e-18 97.1 59 74.6
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 5.3e-18 96.3 72 68.1
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 2.1e-14 84.3 119 42.0
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 5.1e-13 79.7 51 64.7
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 1.8e-10 71.2 49 65.3
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 7.6e-09 65.9 35 94.3
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 1.9e-07 61.2 28 85.7
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 1.9e-07 61.2 28 85.7


User provided reference genes

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