Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 7.2e-124 447.2 217 100.0
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 7.8e-62 241.1 217 59.4
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 8.6e-61 237.7 218 61.0
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 5.6e-60 235.0 217 58.5
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 5.6e-60 235.0 224 55.8
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 6.2e-59 231.5 217 61.3
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 4.0e-58 228.8 217 60.8
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 8.9e-58 227.6 217 60.8
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 8.9e-58 227.6 217 60.8
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 8.9e-58 227.6 226 54.9
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 5.8e-57 224.9 226 55.3
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 1.1e-55 220.7 214 59.3
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 4.2e-55 218.8 216 55.1
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 7.1e-55 218.0 215 55.3
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 9.3e-55 217.6 216 55.6
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 1.2e-54 217.2 211 54.5
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 1.0e-53 214.2 216 54.2
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 1.3e-53 213.8 216 53.7
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.7e-53 213.4 216 54.2
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.1e-53 211.8 212 52.8
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.1e-53 211.8 212 52.8
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 5.1e-53 211.8 216 55.1
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 8.7e-53 211.1 222 52.3
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 8.7e-53 211.1 216 55.1
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 1.5e-52 210.3 224 53.1
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 1.9e-52 209.9 225 53.3
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 1.9e-52 209.9 219 55.3
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 2.5e-52 209.5 222 53.2
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 2.5e-52 209.5 221 50.7
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 5.6e-52 208.4 217 50.2
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 1.3e-51 207.2 231 48.1
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.6e-51 206.8 217 49.8
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 2.1e-51 206.5 236 49.2
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 4.8e-51 205.3 217 49.3
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 8.1e-51 204.5 218 50.9
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 1.1e-50 204.1 223 53.4
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 1.8e-50 203.4 218 50.9
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 1.8e-50 203.4 219 50.2
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 3.1e-50 202.6 213 52.1
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.1e-50 202.6 212 51.4
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.1e-50 202.6 212 51.4
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 4.0e-50 202.2 216 49.5
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 5.3e-50 201.8 218 50.9
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 6.9e-50 201.4 231 49.8
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 2.6e-49 199.5 220 50.9
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 2.6e-49 199.5 217 52.1
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 2.6e-49 199.5 217 48.4
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 3.4e-49 199.1 219 50.7
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 3.4e-49 199.1 219 50.7
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 5.8e-49 198.4 217 51.6
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 7.6e-49 198.0 221 49.8
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 1.3e-48 197.2 219 50.2
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.3e-48 197.2 237 45.6
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.3e-48 197.2 237 45.6
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 1.7e-48 196.8 227 48.9
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 1.7e-48 196.8 226 46.5
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 1.7e-48 196.8 214 51.4
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 2.2e-48 196.4 220 51.4
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 2.9e-48 196.1 234 48.3
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 2.9e-48 196.1 234 49.1
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 3.8e-48 195.7 229 48.9
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 3.8e-48 195.7 231 48.1
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 3.8e-48 195.7 218 51.8
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 4.9e-48 195.3 233 48.9
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 6.4e-48 194.9 234 48.3
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 8.4e-48 194.5 232 46.1
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 1.1e-47 194.1 227 47.6
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 1.4e-47 193.7 236 47.5
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 1.4e-47 193.7 231 48.5
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 1.4e-47 193.7 229 50.2
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.9e-47 193.4 218 51.4
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 1.9e-47 193.4 228 45.6
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 2.4e-47 193.0 240 45.4
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 4.2e-47 192.2 237 48.1
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 4.2e-47 192.2 220 46.4
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 5.4e-47 191.8 231 47.2
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 7.1e-47 191.4 230 47.4
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.2e-46 190.7 218 50.5
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 2.1e-46 189.9 231 47.6
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.1e-46 189.9 211 48.3
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 2.1e-46 189.9 196 49.0
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 3.5e-46 189.1 226 47.3
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 6.0e-46 188.3 234 46.2
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 7.9e-46 188.0 228 44.7
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 2.3e-45 186.4 231 45.9
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 3.0e-45 186.0 217 48.4
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 3.9e-45 185.7 238 45.8
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 3.9e-45 185.7 157 58.6
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 5.1e-45 185.3 229 48.5
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 6.7e-45 184.9 167 54.5
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 1.1e-44 184.1 226 46.5
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 2.5e-44 183.0 217 46.5
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 3.3e-44 182.6 228 45.2
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 1.1e-42 177.6 243 44.0
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 6.9e-42 174.9 240 45.4
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 9.9e-41 171.0 216 47.2
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 1.3e-40 170.6 211 46.4
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 1.3e-40 170.6 213 46.9
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.3e-40 170.6 230 43.0
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 1.3e-40 170.6 234 43.6
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 2.2e-40 169.9 230 43.5
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 2.2e-40 169.9 198 48.5
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.1e-39 167.5 241 41.1
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 2.4e-39 166.4 208 43.8
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 1.6e-38 163.7 209 45.5
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 7.9e-38 161.4 217 43.3
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 6.2e-35 151.8 223 43.0
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 1.8e-34 150.2 153 50.3
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 2.4e-34 149.8 223 42.6
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 4.0e-34 149.1 178 47.8
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 5.3e-34 148.7 166 47.6
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 1.5e-33 147.1 221 41.6
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 1.3e-32 144.1 196 40.8
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 1.1e-31 141.0 153 47.1
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 2.1e-30 136.7 207 40.6
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 7.4e-28 128.3 173 42.2
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 2.4e-26 123.2 173 42.8
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 1.2e-25 120.9 124 48.4
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 2.0e-25 120.2 208 37.5
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 3.4e-25 119.4 217 35.9
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 5.9e-25 118.6 99 58.6
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 2.3e-21 106.7 109 49.5
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 8.7e-21 104.8 108 48.1
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 2.8e-19 99.8 88 62.5
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 7.7e-17 91.7 95 47.4
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 3.8e-16 89.4 273 27.8
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 1.5e-12 77.4 91 46.2
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 1.5e-12 77.4 81 49.4
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 4.4e-12 75.9 87 43.7
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 2.2e-11 73.6 196 30.6
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 3.7e-11 72.8 220 30.0
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 1.4e-10 70.9 214 32.2
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 3.1e-10 69.7 94 44.7
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 2.5e-07 60.1 85 35.3
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 6.1e-06 55.5 212 27.4


User provided reference genes

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