Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p007021 Quercus lobata HOM05D008051 ORTHO05D009905 1.4e-73 280.0 196 100.0
Cfa020295 Carpinus fangiana HOM05D008051 ORTHO05D009905 1.4e-30 137.1 159 71.1
Haze_09724 Corylus avellana HOM05D008051 ORTHO05D009905 4.2e-30 135.6 158 70.3
Haze_21342 Corylus avellana HOM05D008051 ORTHO05D009905 4.2e-30 135.6 159 71.1
Haze_21340 Corylus avellana HOM05D008051 ORTHO05D009905 3.5e-29 132.5 159 70.4
Cfa012978 Carpinus fangiana HOM05D008051 ORTHO05D009905 1.8e-28 130.2 159 68.6
Dinv40787 Davidia involucrata HOM05D002089 ORTHO05D002848 4.0e-25 119.0 172 66.3
Ciclev10010548m.g Citrus clementina HOM05D008051 ORTHO05D009905 5.8e-24 115.2 110 58.2
TWI39G0594 Tripterygium wilfordii HOM05D008051 ORTHO05D009905 7.6e-24 114.8 160 65.6
CAN.G407.107 Capsicum annuum HOM05D008051 ORTHO05D009905 2.9e-23 112.8 146 69.2
Potri.001G355700 Populus trichocarpa HOM05D008051 ORTHO05D009905 4.9e-23 112.1 145 66.2
Sabra11G0071300 Salix brachista HOM05D008051 ORTHO05D009905 2.5e-22 109.8 109 51.4
Solyc03g116450.1 Solanum lycopersicum HOM05D008051 ORTHO05D009905 7.1e-22 108.2 154 63.6
DCAR_009646 Daucus carota HOM05D008051 ORTHO05D009905 4.6e-21 105.5 161 62.1
CiPaw.11G193500 Carya illinoinensis HOM05D008051 ORTHO05D009905 6.0e-21 105.1 78 65.4
CSS0002609 Camellia sinensis var. sinensis HOM05D008051 ORTHO05D009905 7.9e-21 104.8 149 65.1
PGSC0003DMG401000629 Solanum tuberosum HOM05D008051 ORTHO05D009905 1.0e-20 104.4 155 63.2
Oeu021430.1 Olea europaea HOM05D008051 ORTHO05D009905 1.3e-20 104.0 148 64.9
Rhsim06G0068300 Rhododendron simsii HOM05D008051 ORTHO05D009905 2.3e-20 103.2 96 51.0
Ah.04g166050 Amaranthus hybridus HOM05D000120 ORTHO05D002159 6.7e-20 101.7 148 62.2
Glyma.18G093000 Glycine max HOM05D008051 ORTHO05D009905 8.7e-20 101.3 100 51.0
Eucgr.F00712 Eucalyptus grandis HOM05D008051 ORTHO05D009905 4.3e-19 99.0 150 62.7
EL10Ac4g07747 Beta vulgaris HOM05D008051 ORTHO05D009905 7.4e-19 98.2 124 68.5
vmacro21377 Vaccinium macrocarpon HOM05D008051 ORTHO05D009905 7.4e-19 98.2 107 43.9
CANSAT11G0109 Cannabis sativa HOM05D008051 ORTHO05D009905 1.3e-18 97.4 106 50.0
ATR0752G075 Amborella trichopoda HOM05D008051 ORTHO05D009905 2.8e-18 96.3 123 69.9
RcHm_v2.0_Chr5g0041151 Rosa chinensis HOM05D008051 ORTHO05D009905 3.7e-18 95.9 157 63.1
TPR.G33768 Trifolium pratense HOM05D008051 ORTHO05D009905 8.2e-18 94.7 94 50.0
Duzib213G0687 Durio zibethinus HOM05D008051 ORTHO05D009905 1.1e-17 94.4 159 62.3
MBI18_g27147_MAGBIO Magnolia biondii HOM05D008051 ORTHO05D009905 1.1e-17 94.4 130 66.9
SGA_v2.0_scaffold196G40891 Striga asiatica HOM05D008051 ORTHO05D009905 1.8e-17 93.6 117 72.6
Thecc.07G029800 Theobroma cacao HOM05D008051 ORTHO05D009905 1.8e-17 93.6 108 51.9
Phvul.006G046600 Phaseolus vulgaris HOM05D008051 ORTHO05D009905 2.4e-17 93.2 99 47.5
Cpa.g.sc12.286 Carica papaya HOM05D008051 ORTHO05D009905 4.1e-17 92.4 102 45.1
Gorai.002G092500 Gossypium raimondii HOM05D008051 ORTHO05D009905 4.1e-17 92.4 157 61.8
Gohir.D01G070000 Gossypium hirsutum HOM05D008051 ORTHO05D009905 1.2e-16 90.9 157 61.1
COL.COLO4_09713 Corchorus olitorius HOM05D008051 ORTHO05D009905 2.0e-16 90.1 108 49.1
SGA_v2.0_scaffold196G40892 Striga asiatica HOM05D008051 ORTHO05D009905 5.9e-16 88.6 116 71.6
Sabra11G0072200 Salix brachista HOM05D008051 ORTHO05D009905 1.3e-15 87.4 98 49.0
Gohir.A01G083500 Gossypium hirsutum HOM05D008051 ORTHO05D009905 1.7e-15 87.0 107 47.7
Manes.15G067600 Manihot esculenta HOM05D008051 ORTHO05D009905 1.7e-15 87.0 130 39.2
PGR083G0962 Punica granatum HOM05D008051 ORTHO05D009905 1.7e-15 87.0 89 48.3
MSTRG.4127 Avicennia marina HOM05D008051 ORTHO05D009905 2.2e-15 86.7 157 58.0
Migut.N00262 Erythranthe guttata HOM05D008051 ORTHO05D009905 3.8e-15 85.9 109 43.1
MD11G1211300 Malus domestica HOM05D008051 ORTHO05D009905 1.4e-14 84.0 114 43.9
VMungo0540G2374 Vigna mungo HOM05D008051 ORTHO05D009905 1.4e-14 84.0 81 45.7
Medtr5g063040 Medicago truncatula HOM05D008051 ORTHO05D009905 1.9e-14 83.6 100 44.0
Cpa.g.sc12.259 Carica papaya HOM05D008051 ORTHO05D009905 5.5e-14 82.0 93 49.5
THA.LOC104798770 Tarenaya hassleriana HOM05D012777 ORTHO05D009905 7.2e-14 81.6 145 53.1
arahy.Tifrunner.gnm1.ann1.QA2XZ5 Arachis hypogaea HOM05D008051 ORTHO05D009905 1.2e-13 80.9 94 45.7
Glyma.02G292700 Glycine max HOM05D008051 ORTHO05D009905 1.2e-13 80.9 103 43.7
Lsat_1_v5_gn_5_3180 Lactuca sativa HOM05D008051 ORTHO05D009905 1.6e-13 80.5 66 53.0
Prupe.4G221300 Prunus persica HOM05D008051 ORTHO05D009905 2.1e-13 80.1 107 42.1
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 2.7e-13 79.7 73 54.8
HanXRQChr08g0233561 Helianthus annuus HOM05D008051 ORTHO05D009905 2.7e-13 79.7 163 54.6
Medtr7g074360 Medicago truncatula HOM05D008051 ORTHO05D009905 6.1e-13 78.6 90 43.3
Lalb_Chr15g0081481 Lupinus albus HOM05D008051 ORTHO05D009905 7.9e-13 78.2 89 46.1
Medtr8g442670 Medicago truncatula HOM05D008051 ORTHO05D009905 1.0e-12 77.8 49 63.3
Medtr7g025060 Medicago truncatula HOM05D008051 ORTHO05D009905 1.8e-12 77.0 95 40.0
Medtr7g074340 Medicago truncatula HOM05D008051 ORTHO05D009905 1.8e-12 77.0 103 38.8
Medtr7g074350 Medicago truncatula HOM05D008051 ORTHO05D009905 1.8e-12 77.0 103 38.8
Glyma.14G021900 Glycine max HOM05D008051 ORTHO05D009905 2.3e-12 76.6 95 44.2
Psat2g012240 Pisum sativum HOM05D008051 ORTHO05D009905 2.0e-11 73.6 51 51.0
Medtr5g093370 Medicago truncatula HOM05D008051 ORTHO05D009905 1.3e-10 70.9 93 38.7
TPR.G24073 Trifolium pratense HOM05D008051 ORTHO05D009905 1.7e-10 70.5 102 39.2
Phvul.008G269500 Phaseolus vulgaris HOM05D008051 ORTHO05D009905 4.8e-10 68.9 95 38.9
Nn7g36860 Nelumbo nucifera HOM05D008051 ORTHO05D009905 6.3e-10 68.6 67 52.2
LjContig00272g0004425 Lotus japonicus HOM05D008051 ORTHO05D009905 8.2e-10 68.2 102 41.2
Lalb_Chr04g0248291 Lupinus albus HOM05D008051 ORTHO05D009905 4.1e-09 65.9 106 39.6
Medtr5g093340 Medicago truncatula HOM05D008051 ORTHO05D009905 4.1e-09 65.9 93 36.6
Nn1g07253 Nelumbo nucifera HOM05D008051 ORTHO05D009905 5.3e-09 65.5 95 42.1
TPR.G1175 Trifolium pratense HOM05D008051 ORTHO05D009905 5.3e-09 65.5 83 42.2
Lalb_Chr17g0348611 Lupinus albus HOM05D008051 ORTHO05D009905 9.1e-09 64.7 45 60.0
Gohir.A13G209200 Gossypium hirsutum HOM05D002014 ORTHO05D001958 5.0e-07 58.9 63 38.1
TPR.G1196 Trifolium pratense HOM05D008051 ORTHO05D009905 5.0e-07 58.9 93 38.7
Gohir.D13G213600 Gossypium hirsutum HOM05D002014 ORTHO05D001958 8.5e-07 58.2 107 30.8
AT1G50650 Arabidopsis thaliana HOM05D012777 ORTHO05D009905 1.1e-06 57.8 107 33.6
Medtr8g442580 Medicago truncatula HOM05D008051 ORTHO05D009905 1.1e-06 57.8 49 51.0
Gorai.013G243900 Gossypium raimondii HOM05D002014 ORTHO05D001958 1.9e-06 57.0 107 29.9
QL05p072342 Quercus lobata HOM05D002014 ORTHO05D001958 1.9e-06 57.0 57 40.4
AL1G58320 Arabidopsis lyrata HOM05D012777 ORTHO05D009905 4.2e-06 55.8 107 32.7
Haze_06834 Corylus avellana HOM05D002014 ORTHO05D001958 4.2e-06 55.8 59 40.7
PSO541G1695 Papaver somniferum HOM05D004357 ORTHO05D005064 4.2e-06 55.8 74 32.4
PSO541G4299 Papaver somniferum HOM05D004357 ORTHO05D005064 4.2e-06 55.8 85 31.8
CsaV3_7G021190 Cucumis sativus L. HOM05D027124 ORTHO05D029025 7.2e-06 55.1 116 31.0
Nn1g07229 Nelumbo nucifera HOM05D002014 ORTHO05D001958 7.2e-06 55.1 53 41.5


User provided reference genes

Program Settings