Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p006881 Quercus lobata HOM05D003691 ORTHO05D004288 0.0e+00 1299.6 661 100.0
Cfa020301 Carpinus fangiana HOM05D003691 ORTHO05D004288 1.0e-285 986.5 664 78.5
Haze_09719 Corylus avellana HOM05D003691 ORTHO05D004288 2.0e-262 909.1 731 68.1
Prupe.4G220400 Prunus persica HOM05D003691 ORTHO05D004288 3.1e-255 885.2 664 69.4
Thecc.07G031000 Theobroma cacao HOM05D003691 ORTHO05D004288 3.9e-245 851.7 662 68.4
TAR624G0007 Trochodendron aralioides HOM05D003691 ORTHO05D004288 8.6e-245 850.5 665 66.6
Atru.chr2.3500 Acer truncatum HOM05D003691 ORTHO05D004288 1.2e-243 846.7 676 67.3
Nn1g03443 Nelumbo nucifera HOM05D003691 ORTHO05D004288 3.4e-241 838.6 669 66.4
GSVIVG01030475001 Vitis vinifera HOM05D003691 ORTHO05D004288 5.6e-236 821.2 663 65.3
Hma1.2p1_0895F.1_g233770 Hydrangea macrophylla HOM05D003691 ORTHO05D004288 4.9e-232 808.1 663 64.0
Haze_12800 Corylus avellana HOM05D003691 ORTHO05D004288 9.2e-231 803.9 661 63.1
CiPaw.03G157800 Carya illinoinensis HOM05D003691 ORTHO05D004288 1.7e-229 799.7 664 63.1
Dinv08745 Davidia involucrata HOM05D003691 ORTHO05D004288 2.8e-227 792.3 661 64.1
Dinv39731 Davidia involucrata HOM05D003691 ORTHO05D004288 3.6e-227 792.0 663 63.0
QL08p031532 Quercus lobata HOM05D003691 ORTHO05D004288 4.0e-226 788.5 661 62.9
RcHm_v2.0_Chr5g0041001 Rosa chinensis HOM05D003691 ORTHO05D004288 4.4e-225 785.0 645 64.2
TWI75G0495 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 5.8e-225 784.6 665 63.3
FvH4_3g23280 Fragaria vesca HOM05D003691 ORTHO05D004288 1.3e-224 783.5 644 63.7
PSO210G5093 Papaver somniferum HOM05D003691 ORTHO05D004288 1.3e-224 783.5 661 62.6
Potri.014G155900 Populus trichocarpa HOM05D003691 ORTHO05D004288 2.2e-224 782.7 663 63.0
Sabra14G0117900 Salix brachista HOM05D003691 ORTHO05D004288 6.4e-224 781.2 662 63.0
MBI07_g01730_MAGBIO Magnolia biondii HOM05D003691 ORTHO05D004288 1.9e-223 779.6 645 62.0
Ciclev10007620m.g Citrus clementina HOM05D003691 ORTHO05D004288 3.2e-223 778.9 703 61.6
Thecc.01G178100 Theobroma cacao HOM05D003691 ORTHO05D004288 3.5e-222 775.4 662 62.5
TAR626G1388 Trochodendron aralioides HOM05D003691 ORTHO05D004288 6.0e-222 774.6 600 67.7
Manes.04G099700 Manihot esculenta HOM05D003691 ORTHO05D004288 1.0e-221 773.9 663 61.5
Prupe.3G213700 Prunus persica HOM05D003691 ORTHO05D004288 1.3e-221 773.5 662 62.4
CANSAT64G0165 Cannabis sativa HOM05D003691 ORTHO05D004288 3.9e-221 771.9 659 62.5
vmacro09345 Vaccinium macrocarpon HOM05D003691 ORTHO05D004288 6.6e-221 771.2 679 62.3
Aqoxy1G03453 Aquilegia oxysepala HOM05D003691 ORTHO05D004288 9.6e-220 767.3 669 61.7
MD09G1071300 Malus domestica HOM05D003691 ORTHO05D004288 2.1e-219 766.1 661 61.7
Atru.chr6.3228 Acer truncatum HOM05D003691 ORTHO05D004288 2.8e-219 765.8 664 59.6
Duzib138G0684 Durio zibethinus HOM05D003691 ORTHO05D004288 1.1e-218 763.8 661 61.6
TWI36G1355 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 1.4e-218 763.5 666 61.9
Duzib211G0477 Durio zibethinus HOM05D003691 ORTHO05D004288 3.4e-217 758.8 661 61.4
PGR042G1566 Punica granatum HOM05D003691 ORTHO05D004288 7.6e-217 757.7 661 61.4
MD11G1212100 Malus domestica HOM05D003691 ORTHO05D004288 2.2e-216 756.1 662 60.7
Gohir.D07G088400 Gossypium hirsutum HOM05D003691 ORTHO05D004288 1.9e-215 753.1 660 62.0
FAN14G5114 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.4e-215 752.7 667 61.2
Ciclev10014542m.g Citrus clementina HOM05D003691 ORTHO05D004288 4.2e-215 751.9 663 60.5
FAN05G1959 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.1e-214 749.6 667 61.0
RcHm_v2.0_Chr2g0158621 Rosa chinensis HOM05D003691 ORTHO05D004288 2.1e-214 749.6 664 60.8
Gorai.001G094600 Gossypium raimondii HOM05D003691 ORTHO05D004288 4.6e-214 748.4 670 61.2
Gohir.A07G081900 Gossypium hirsutum HOM05D003691 ORTHO05D004288 6.0e-214 748.0 670 61.5
THA.LOC104816038 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 1.5e-212 743.4 670 59.1
FAN09G0430 Fragaria x ananassa HOM05D003691 ORTHO05D004288 4.3e-212 741.9 667 60.6
Glyma.06G308100 Glycine max HOM05D003691 ORTHO05D004288 4.3e-212 741.9 661 59.9
FvH4_6g42730 Fragaria vesca HOM05D003691 ORTHO05D004288 1.3e-211 740.3 677 60.0
Lalb_Chr03g0028581 Lupinus albus HOM05D003691 ORTHO05D004288 1.3e-211 740.3 669 59.2
Rhsim04G0052200 Rhododendron simsii HOM05D003691 ORTHO05D004288 1.3e-211 740.3 677 60.7
FAN21G2044 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.1e-211 739.6 644 61.2
Medtr4g050060 Medicago truncatula HOM05D003691 ORTHO05D004288 2.1e-211 739.6 659 59.5
CiPaw.11G193000 Carya illinoinensis HOM05D003691 ORTHO05D004288 3.6e-211 738.8 508 75.8
Glyma.12G096700 Glycine max HOM05D003691 ORTHO05D004288 1.8e-210 736.5 661 59.8
Hund02023 Selenicereus undatus HOM05D003691 ORTHO05D004288 3.4e-209 732.3 712 56.2
Eucgr.A01107 Eucalyptus grandis HOM05D003691 ORTHO05D004288 5.8e-209 731.5 652 61.3
AL4G27990 Arabidopsis lyrata HOM05D003691 ORTHO05D004288 9.9e-209 730.7 669 58.0
Sed0022442 Sechium edule HOM05D003691 ORTHO05D004288 2.9e-208 729.2 663 60.2
Phvul.011G101300 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 3.8e-208 728.8 664 58.9
ClCG02G009060 Citrullus lanatus HOM05D003691 ORTHO05D004288 8.4e-208 727.6 663 60.2
arahy.Tifrunner.gnm1.ann1.AS5DTW Arachis hypogaea HOM05D003691 ORTHO05D004288 2.7e-206 722.6 673 58.5
Thhalv10016359m.g Eutrema salsugineum HOM05D003691 ORTHO05D004288 4.6e-206 721.8 669 57.2
Oeu027232.1 Olea europaea HOM05D003691 ORTHO05D004288 7.9e-206 721.1 659 59.3
arahy.Tifrunner.gnm1.ann1.4D79G7 Arachis hypogaea HOM05D003691 ORTHO05D004288 1.3e-205 720.3 673 58.4
CsaV3_2G034670 Cucumis sativus L. HOM05D003691 ORTHO05D004288 1.7e-205 719.9 663 59.4
Sc12g0002210 Simmondsia chinensis HOM05D003691 ORTHO05D004288 1.7e-205 719.9 676 58.0
EL10Ac4g07751 Beta vulgaris HOM05D003691 ORTHO05D004288 6.6e-205 718.0 684 58.3
TPR.G4630 Trifolium pratense HOM05D003691 ORTHO05D004288 8.7e-205 717.6 666 58.6
MSTRG.14857 Avicennia marina HOM05D003691 ORTHO05D004288 1.1e-204 717.2 644 60.1
Migut.M00432 Erythranthe guttata HOM05D003691 ORTHO05D004288 2.5e-204 716.1 664 59.5
Sp4g14920 Schrenkiella parvula HOM05D003691 ORTHO05D004288 4.3e-204 715.3 667 57.6
MELO3C019300.2 Cucumis melo HOM05D003691 ORTHO05D004288 1.3e-203 713.8 663 59.3
VMungo1127G0496 Vigna mungo HOM05D003691 ORTHO05D004288 6.2e-203 711.4 662 58.5
DCAR_019753 Daucus carota HOM05D003691 ORTHO05D004288 1.4e-202 710.3 661 61.0
A04p25040 Brassica napus HOM05D003691 ORTHO05D004288 1.8e-202 709.9 669 58.0
AT2G32590 Arabidopsis thaliana HOM05D003691 ORTHO05D004288 5.3e-202 708.4 671 56.9
Carub.0004s1392 Capsella rubella HOM05D003691 ORTHO05D004288 5.3e-202 708.4 667 57.3
CARHR126440 Cardamine hirsuta HOM05D003691 ORTHO05D004288 6.9e-202 708.0 678 57.1
FAN02G0990 Fragaria x ananassa HOM05D003691 ORTHO05D004288 6.9e-202 708.0 667 59.1
Lj3g0007999 Lotus japonicus HOM05D003691 ORTHO05D004288 6.9e-202 708.0 665 58.5
HanXRQChr04g0126971 Helianthus annuus HOM05D003691 ORTHO05D004288 1.5e-201 706.8 649 59.8
Psat7g203760 Pisum sativum HOM05D003691 ORTHO05D004288 1.7e-200 703.4 659 58.6
SalBow7G1078 Salvia bowleyana HOM05D003691 ORTHO05D004288 2.2e-200 703.0 665 58.5
FAN11G2344 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.9e-200 702.6 582 62.9
BraA04t18015Z Brassica rapa HOM05D003691 ORTHO05D004288 1.4e-199 700.3 670 57.3
ECA240G1119 Erigeron canadensis HOM05D003691 ORTHO05D004288 1.4e-199 700.3 666 56.8
AUR62015833 Chenopodium quinoa HOM05D003691 ORTHO05D004288 2.4e-199 699.5 696 56.0
A05p13290 Brassica napus HOM05D003691 ORTHO05D004288 4.6e-198 695.3 669 56.2
C04p17080 Brassica napus HOM05D003691 ORTHO05D004288 6.0e-198 694.9 670 56.6
THA.LOC104826143 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 1.8e-197 693.3 682 58.5
BolC4t23260H Brassica oleracea HOM05D003691 ORTHO05D004288 2.3e-197 693.0 683 55.6
BraA05t20270Z Brassica rapa HOM05D003691 ORTHO05D004288 1.1e-196 690.6 671 56.6
SGA_v2.0_scaffold70G23393 Striga asiatica HOM05D003691 ORTHO05D004288 1.9e-196 689.9 645 58.8
Lsat_1_v5_gn_7_93200 Lactuca sativa HOM05D003691 ORTHO05D004288 1.1e-194 684.1 670 57.8
Glyma.12G191300 Glycine max HOM05D003691 ORTHO05D004288 2.4e-194 682.9 671 54.5
CAN.G290.10 Capsicum annuum HOM05D003691 ORTHO05D004288 1.2e-193 680.6 654 58.3
Ca_19493_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 3.4e-193 679.1 672 56.1
Sopen07g025100 Solanum pennellii HOM05D003691 ORTHO05D004288 3.4e-193 679.1 662 56.9
Lj8A127T48 Lonicera japonica HOM05D003691 ORTHO05D004288 1.3e-192 677.2 583 60.7
ECA236G1051 Erigeron canadensis HOM05D003691 ORTHO05D004288 2.2e-192 676.4 667 56.2
Solyc07g049680.4 Solanum lycopersicum HOM05D003691 ORTHO05D004288 2.2e-192 676.4 642 57.8
Cc05_g03670 Coffea canephora HOM05D003691 ORTHO05D004288 4.9e-192 675.2 706 54.7
DCAR_021155 Daucus carota HOM05D003691 ORTHO05D004288 2.5e-191 672.9 657 55.7
ATR0317G123 Amborella trichopoda HOM05D003691 ORTHO05D004288 1.2e-190 670.6 659 56.3
PGSC0003DMG400001077 Solanum tuberosum HOM05D003691 ORTHO05D004288 1.2e-190 670.6 662 56.5
Phvul.005G116900 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 2.1e-190 669.8 665 54.6
GSVIVG01037701001 Vitis vinifera HOM05D003691 ORTHO05D004288 4.6e-190 668.7 648 57.4
Ah.06g182530 Amaranthus hybridus HOM05D003691 ORTHO05D004288 1.0e-189 667.5 682 54.5
Nitab4.5_0000130g0240 Nicotiana tabacum HOM05D003691 ORTHO05D004288 3.0e-189 666.0 666 56.2
Aa31LG5G4740 Aethionema arabicum HOM05D003691 ORTHO05D004288 1.1e-188 664.1 668 54.0
TPR.G4243 Trifolium pratense HOM05D003691 ORTHO05D004288 2.5e-188 662.9 684 54.1
Psat5g261240 Pisum sativum HOM05D003691 ORTHO05D004288 7.4e-188 661.4 661 55.1
Nitab4.5_0015742g0010 Nicotiana tabacum HOM05D003691 ORTHO05D004288 1.1e-186 657.5 665 54.9
Medtr2g087880 Medicago truncatula HOM05D003691 ORTHO05D004288 1.5e-185 653.7 665 54.3
Ca_01616_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 3.8e-184 649.0 698 52.9
VMungo1080G0849 Vigna mungo HOM05D003691 ORTHO05D004288 3.8e-184 649.0 663 53.8
Lsat_1_v5_gn_9_106740 Lactuca sativa HOM05D003691 ORTHO05D004288 1.5e-180 637.1 660 54.5
HPP92_023149 Vanilla planifolia HOM05D003691 ORTHO05D004288 8.2e-179 631.3 654 54.0
LjContig00274_ERROPOS1100000g0006521 Lotus japonicus HOM05D003691 ORTHO05D004288 4.1e-178 629.0 606 56.1
Zm00001eb162990 Zea mays HOM05D003691 ORTHO05D004288 1.0e-176 624.4 648 53.9
Dinv22243 Davidia involucrata HOM05D003691 ORTHO05D004288 5.3e-170 602.1 542 63.5
Peaxi162Scf00007g00129 Petunia axillaris HOM05D003691 ORTHO05D004288 7.7e-169 598.2 662 51.7
Hund02022 Selenicereus undatus HOM05D003691 ORTHO05D004288 3.2e-167 592.8 684 50.7
Cpa.g.sc87.104 Carica papaya HOM05D003691 ORTHO05D004288 4.7e-166 589.0 512 60.7
BcaB06g28606 Brassica carinata HOM05D003691 ORTHO05D004288 1.0e-165 587.8 673 51.4
AUR62020387 Chenopodium quinoa HOM05D003691 ORTHO05D004288 1.4e-162 577.4 679 50.1
BcaB06g28605 Brassica carinata HOM05D003691 ORTHO05D004288 3.1e-162 576.2 653 52.2
Hund02025 Selenicereus undatus HOM05D003691 ORTHO05D004288 3.1e-162 576.2 684 49.7
CSS0013476 Camellia sinensis var. sinensis HOM05D003691 ORTHO05D004288 4.5e-161 572.4 494 59.3
COL.COLO4_09704 Corchorus olitorius HOM05D003691 ORTHO05D004288 1.3e-160 570.9 500 62.6
BcaB02g10460 Brassica carinata HOM05D003691 ORTHO05D004288 1.2e-158 564.3 502 58.8
BolC4t27689H Brassica oleracea HOM05D003691 ORTHO05D004288 1.9e-143 513.8 528 54.7
Lj8A171G44 Lonicera japonica HOM05D003691 ORTHO05D004288 6.6e-136 488.8 489 55.8
AUR62015832 Chenopodium quinoa HOM05D003691 ORTHO05D004288 8.6e-136 488.4 593 49.7
unitig_60.g25819 Utricularia gibba HOM05D003691 ORTHO05D004288 6.1e-134 482.3 664 45.9
C04p62100 Brassica napus HOM05D003691 ORTHO05D004288 6.4e-131 472.2 454 57.5
MD03G1195700 Malus domestica HOM05D003691 ORTHO05D004288 7.0e-130 468.8 406 59.6
Gohir.A07G186000 Gossypium hirsutum HOM05D003691 ORTHO05D004288 9.8e-124 448.4 437 55.6
BcaC02g07908 Brassica carinata HOM05D003691 ORTHO05D004288 1.6e-121 441.0 647 43.4
Pp3c11_22430 Physcomitrium patens HOM05D003691 ORTHO05D004288 4.6e-121 439.5 690 41.3
Mapoly0002s0133 Marchantia polymorpha HOM05D003691 ORTHO05D004288 2.3e-117 427.2 709 41.0
Actinidia10811 Actinidia chinensis HOM05D003691 ORTHO05D004288 3.1e-117 426.8 445 58.9
SEGI_30766 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 3.4e-116 423.3 570 45.4
SEGI_37895 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 4.0e-109 399.8 572 45.1
AagrBONN_evm.TU.Sc2ySwM_228.2537 Anthoceros agrestis HOM05D003691 ORTHO05D004288 8.4e-107 392.1 699 39.2
FAN25G2879 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.9e-104 383.3 340 58.8
AUR62020385 Chenopodium quinoa HOM05D003691 ORTHO05D004288 4.3e-103 379.8 334 62.9
FAN25G2100 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.1e-101 373.6 293 67.9
Lalb_Chr19g0136071 Lupinus albus HOM05D003691 ORTHO05D004288 5.2e-101 372.9 368 62.5
Oeu036739.1 Olea europaea HOM05D003691 ORTHO05D004288 1.9e-95 354.4 267 71.5
CBR_g26183 Chara braunii HOM05D003691 ORTHO05D004288 9.0e-93 345.5 797 33.4
Pp3c7_4280 Physcomitrium patens HOM05D003691 ORTHO05D004288 4.5e-92 343.2 693 37.4
Lalb_Chr19g0136061 Lupinus albus HOM05D003691 ORTHO05D004288 9.3e-90 335.5 279 59.5
MCO04G245 Micromonas commoda HOM05D003691 ORTHO05D004288 4.6e-73 280.0 634 35.0
Os01g0532800 Oryza sativa ssp. japonica HOM05D003691 ORTHO05D004288 8.7e-72 275.8 306 47.1
PRCOL_00002032 Prasinoderma coloniale HOM05D003691 ORTHO05D004288 1.1e-69 268.9 618 34.5
SHI10368 Sapria himalayana HOM05D003691 ORTHO05D004288 3.0e-64 250.8 416 39.9
MD17G1101300 Malus domestica HOM05D003691 ORTHO05D004288 8.7e-64 249.2 257 58.0
Lj8A171G43 Lonicera japonica HOM05D003691 ORTHO05D004288 6.9e-53 213.0 147 66.7
Actinidia10812 Actinidia chinensis HOM05D003691 ORTHO05D004288 2.2e-51 208.0 212 53.3
Cfa026695 Carpinus fangiana HOM05D003691 ORTHO05D004288 3.5e-44 184.1 718 26.0
CDE09G1127 Ceratophyllum demersum HOM05D003691 ORTHO05D004288 1.0e-43 182.6 215 51.6
Sed0010458 Sechium edule HOM05D003691 ORTHO05D004288 3.0e-40 171.0 243 43.2
MD03G1195600 Malus domestica HOM05D003691 ORTHO05D004288 4.1e-29 134.0 164 54.3
Dinv22244 Davidia involucrata HOM05D007542 ORTHO05D009519 1.7e-27 128.6 81 72.8
SEGI_16706 Sequoiadendron giganteum HOM05D003691 ORTHO05D017750 6.5e-27 126.7 114 59.6
C04p62090 Brassica napus HOM05D003691 ORTHO05D004288 6.8e-24 116.7 135 51.9
SEGI_15855 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 6.3e-22 110.2 110 56.4
CAN.G574.39 Capsicum annuum HOM05D003691 ORTHO05D004288 1.0e-19 102.8 88 58.0
arahy.Tifrunner.gnm1.ann1.NAA2I0 Arachis hypogaea HOM05D003691 ORTHO05D004288 2.5e-18 98.2 61 80.3
EL10Ac4g08622 Beta vulgaris HOM05D003691 ORTHO05D019836 2.8e-17 94.7 73 60.3
CAN.G574.40 Capsicum annuum HOM05D003691 ORTHO05D004288 8.0e-17 93.2 68 63.2
ATR0772G025 Amborella trichopoda HOM05D003691 ORTHO05D004288 1.0e-16 92.8 114 44.7
TPR.G2961 Trifolium pratense HOM05D001978 ORTHO05D003036 2.3e-11 75.1 52 65.4
SHI10370 Sapria himalayana HOM05D000105 ORTHO05D000023 3.0e-11 74.7 63 65.1
Rhsim07G0255900 Rhododendron simsii HOM05D000234 ORTHO05D004288 6.6e-11 73.6 152 35.5
SHI10371 Sapria himalayana HOM05D003691 ORTHO05D004288 6.6e-11 73.6 82 52.4
Glyma.13G310451 Glycine max HOM05D003691 ORTHO05D004288 1.5e-10 72.4 49 67.3
Actinidia03601 Actinidia chinensis HOM05D003691 ORTHO05D004288 7.3e-10 70.1 49 69.4
TPR.G35222 Trifolium pratense HOM05D003691 ORTHO05D004288 9.5e-10 69.7 49 63.3
Dinv17119 Davidia involucrata HOM05D003691 ORTHO05D004288 6.2e-09 67.0 89 43.8
MD17G1101200 Malus domestica HOM05D003691 ORTHO05D004288 6.2e-09 67.0 87 42.5
MD17G1101000 Malus domestica HOM05D003691 ORTHO05D004288 1.4e-08 65.9 46 65.2
FAN16G1928 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.3e-08 65.1 93 43.0
Dinv18681 Davidia involucrata HOM05D003691 ORTHO05D004288 1.3e-06 59.3 45 60.0
Cre13.g589300 Chlamydomonas reinhardtii HOM05D003691 ORTHO05D004288 1.7e-06 58.9 205 22.4


User provided reference genes

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