Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p006267 Quercus lobata HOM05D003834 ORTHO05D004483 4.0e-96 354.8 180 100.0
QL08p005445 Quercus lobata HOM05D003834 ORTHO05D004483 3.7e-73 278.5 156 89.1
CiPaw.12G136300 Carya illinoinensis HOM05D003834 ORTHO05D004483 6.1e-68 261.2 156 84.0
Cfa020225 Carpinus fangiana HOM05D003834 ORTHO05D004483 7.9e-68 260.8 156 84.0
Haze_09794 Corylus avellana HOM05D003834 ORTHO05D004483 3.9e-67 258.5 156 84.0
TWI38G0150 Tripterygium wilfordii HOM05D003834 ORTHO05D004483 1.1e-66 256.9 159 80.5
Manes.03G138400 Manihot esculenta HOM05D003834 ORTHO05D004483 7.4e-66 254.2 159 79.2
CANSAT11G2090 Cannabis sativa HOM05D003834 ORTHO05D004483 9.7e-66 253.8 157 83.4
TWI39G0575 Tripterygium wilfordii HOM05D003834 ORTHO05D004483 9.7e-66 253.8 159 80.5
TAR627G0963 Trochodendron aralioides HOM05D003834 ORTHO05D004483 1.3e-65 253.4 159 81.8
Lj8A176T68 Lonicera japonica HOM05D003834 ORTHO05D004483 2.8e-65 252.3 159 80.5
MD03G1188400 Malus domestica HOM05D003834 ORTHO05D004483 2.8e-65 252.3 156 81.4
CSS0019206 Camellia sinensis var. sinensis HOM05D003834 ORTHO05D004483 6.3e-65 251.1 159 79.9
TAR629G2412 Trochodendron aralioides HOM05D003834 ORTHO05D004483 6.3e-65 251.1 159 81.1
VMungo0647G1153 Vigna mungo HOM05D003834 ORTHO05D004483 6.3e-65 251.1 156 78.2
CSS0039625 Camellia sinensis var. sinensis HOM05D003834 ORTHO05D004483 8.2e-65 250.8 159 79.9
Ciclev10007688m.g Citrus clementina HOM05D003834 ORTHO05D004483 8.2e-65 250.8 159 79.2
GSVIVG01037786001 Vitis vinifera HOM05D003834 ORTHO05D004483 8.2e-65 250.8 159 80.5
Atru.chr2.3629 Acer truncatum HOM05D003834 ORTHO05D004483 1.8e-64 249.6 159 79.9
Dinv40838 Davidia involucrata HOM05D003834 ORTHO05D004483 1.8e-64 249.6 159 78.6
Lalb_Chr17g0348801 Lupinus albus HOM05D003834 ORTHO05D004483 2.4e-64 249.2 157 79.6
Thecc.07G019500 Theobroma cacao HOM05D003834 ORTHO05D004483 2.4e-64 249.2 159 79.9
COL.COLO4_09798 Corchorus olitorius HOM05D003834 ORTHO05D004483 3.1e-64 248.8 159 79.9
Oeu057086.1 Olea europaea HOM05D003834 ORTHO05D004483 3.1e-64 248.8 159 79.2
Nn1g03233 Nelumbo nucifera HOM05D003834 ORTHO05D004483 4.1e-64 248.4 157 80.3
Cpa.g.sc12.186 Carica papaya HOM05D003834 ORTHO05D004483 5.3e-64 248.1 159 78.6
Nn1g07452 Nelumbo nucifera HOM05D003834 ORTHO05D004483 5.3e-64 248.1 159 79.2
Gohir.D01G073900 Gossypium hirsutum HOM05D003834 ORTHO05D004483 6.9e-64 247.7 159 78.6
Cc05_g14750 Coffea canephora HOM05D003834 ORTHO05D004483 9.1e-64 247.3 159 77.4
SalBow8G1137 Salvia bowleyana HOM05D003834 ORTHO05D004483 9.1e-64 247.3 159 77.4
Sc16g0007940 Simmondsia chinensis HOM05D003834 ORTHO05D004483 9.1e-64 247.3 163 79.1
Gohir.A01G087800 Gossypium hirsutum HOM05D003834 ORTHO05D004483 1.2e-63 246.9 159 78.6
Gohir.D11G287600 Gossypium hirsutum HOM05D003834 ORTHO05D004483 1.2e-63 246.9 159 78.6
Gorai.007G310900 Gossypium raimondii HOM05D003834 ORTHO05D004483 1.2e-63 246.9 159 78.6
Gorai.002G097000 Gossypium raimondii HOM05D003834 ORTHO05D004483 1.5e-63 246.5 159 78.0
MBI16_g26376_MAGBIO Magnolia biondii HOM05D003834 ORTHO05D004483 1.5e-63 246.5 160 78.1
Glyma.14G015600 Glycine max HOM05D003834 ORTHO05D004483 2.0e-63 246.1 156 78.8
Hma1.2p1_0036F.1_g022680 Hydrangea macrophylla HOM05D003834 ORTHO05D004483 2.0e-63 246.1 159 77.4
Medtr5g094740 Medicago truncatula HOM05D003834 ORTHO05D004483 2.0e-63 246.1 156 78.2
Potri.001G362100 Populus trichocarpa HOM05D003834 ORTHO05D004483 2.0e-63 246.1 159 79.2
Peaxi162Scf00285g00817 Petunia axillaris HOM05D003834 ORTHO05D004483 2.6e-63 245.7 173 72.8
Phvul.008G276000 Phaseolus vulgaris HOM05D003834 ORTHO05D004483 2.6e-63 245.7 156 76.9
SGA_v2.0_scaffold168G38536 Striga asiatica HOM05D003834 ORTHO05D004483 2.6e-63 245.7 159 77.4
Ca_06377_v3 Cicer arietinum L. HOM05D003834 ORTHO05D004483 3.4e-63 245.4 156 77.6
Lalb_Chr04g0247941 Lupinus albus HOM05D003834 ORTHO05D004483 3.4e-63 245.4 156 78.2
Sabra16G0238600 Salix brachista HOM05D003834 ORTHO05D004483 4.5e-63 245.0 161 77.6
CAN.G337.23 Capsicum annuum HOM05D003834 ORTHO05D004483 5.9e-63 244.6 159 76.1
Gohir.A11G277200 Gossypium hirsutum HOM05D003834 ORTHO05D004483 5.9e-63 244.6 159 78.0
Duzib170G1101 Durio zibethinus HOM05D003834 ORTHO05D004483 7.7e-63 244.2 159 78.0
arahy.Tifrunner.gnm1.ann1.08QZGW Arachis hypogaea HOM05D003834 ORTHO05D004483 1.0e-62 243.8 157 78.3
arahy.Tifrunner.gnm1.ann1.BBM6FL Arachis hypogaea HOM05D003834 ORTHO05D004483 1.0e-62 243.8 157 78.3
arahy.Tifrunner.gnm1.ann1.C43X3W Arachis hypogaea HOM05D003834 ORTHO05D004483 1.0e-62 243.8 157 78.3
Psat2g008920 Pisum sativum HOM05D003834 ORTHO05D004483 1.0e-62 243.8 156 78.2
Nitab4.5_0000461g0120 Nicotiana tabacum HOM05D003834 ORTHO05D004483 1.3e-62 243.4 159 76.1
Nitab4.5_0003612g0010 Nicotiana tabacum HOM05D003834 ORTHO05D004483 1.3e-62 243.4 159 76.1
Solyc07g065310.3 Solanum lycopersicum HOM05D003834 ORTHO05D004483 1.7e-62 243.0 159 75.5
Sopen07g033510 Solanum pennellii HOM05D003834 ORTHO05D004483 1.7e-62 243.0 159 75.5
Dinv05352 Davidia involucrata HOM05D003834 ORTHO05D004483 2.2e-62 242.7 151 82.8
Thhalv10011303m.g Eutrema salsugineum HOM05D003834 ORTHO05D004483 2.2e-62 242.7 159 76.7
TPR.G14161 Trifolium pratense HOM05D003834 ORTHO05D004483 2.2e-62 242.7 156 77.6
AT1G55930 Arabidopsis thaliana HOM05D003834 ORTHO05D004483 2.9e-62 242.3 159 76.7
PSO210G2219 Papaver somniferum HOM05D003834 ORTHO05D004483 2.9e-62 242.3 159 78.6
Actinidia05029 Actinidia chinensis HOM05D003834 ORTHO05D004483 5.0e-62 241.5 163 76.7
Aqoxy4G02225 Aquilegia oxysepala HOM05D003834 ORTHO05D004483 5.0e-62 241.5 159 76.1
PGSC0003DMG400022184 Solanum tuberosum HOM05D003834 ORTHO05D004483 6.5e-62 241.1 159 74.8
MD11G1204000 Malus domestica HOM05D003834 ORTHO05D004483 8.5e-62 240.7 156 78.8
SGA_v2.0_scaffold171G38885 Striga asiatica HOM05D003834 ORTHO05D004483 1.1e-61 240.4 159 75.5
FAN11G3562 Fragaria x ananassa HOM05D003834 ORTHO05D004483 1.4e-61 240.0 156 79.5
FAN16G1958 Fragaria x ananassa HOM05D003834 ORTHO05D004483 1.4e-61 240.0 156 79.5
FAN21G0517 Fragaria x ananassa HOM05D003834 ORTHO05D004483 1.4e-61 240.0 156 79.5
FAN25G0041 Fragaria x ananassa HOM05D003834 ORTHO05D004483 1.4e-61 240.0 156 79.5
PSO302G0051 Papaver somniferum HOM05D003834 ORTHO05D004483 1.4e-61 240.0 159 78.0
Sp1g41540 Schrenkiella parvula HOM05D003834 ORTHO05D004483 1.9e-61 239.6 159 75.5
Prupe.4G235000 Prunus persica HOM05D003834 ORTHO05D004483 2.5e-61 239.2 162 77.8
FvH4_3g24130 Fragaria vesca HOM05D003834 ORTHO05D004483 3.2e-61 238.8 148 83.8
CDE10G0297 Ceratophyllum demersum HOM05D003834 ORTHO05D004483 4.2e-61 238.4 159 76.7
CDE10G0308 Ceratophyllum demersum HOM05D003834 ORTHO05D004483 4.2e-61 238.4 159 76.7
RcHm_v2.0_Chr5g0042791 Rosa chinensis HOM05D003834 ORTHO05D004483 4.2e-61 238.4 156 78.8
FAN25G1232 Fragaria x ananassa HOM05D003834 ORTHO05D004483 5.5e-61 238.0 156 78.8
MELO3C024905.2 Cucumis melo HOM05D003834 ORTHO05D004483 7.2e-61 237.7 156 76.3
CsaV3_7G018550 Cucumis sativus L. HOM05D003834 ORTHO05D004483 7.2e-61 237.7 156 76.3
Aa31LG8G300 Aethionema arabicum HOM05D003834 ORTHO05D004483 1.2e-60 236.9 176 70.5
ECA236G2134 Erigeron canadensis HOM05D003834 ORTHO05D004483 1.2e-60 236.9 159 75.5
LjContig00272g0006391 Lotus japonicus HOM05D003834 ORTHO05D004483 1.6e-60 236.5 156 75.6
Migut.M01671 Erythranthe guttata HOM05D003834 ORTHO05D004483 2.7e-60 235.7 159 74.8
HanXRQChr11g0333951 Helianthus annuus HOM05D003834 ORTHO05D004483 2.7e-60 235.7 159 74.8
ClCG09G021080 Citrullus lanatus HOM05D003834 ORTHO05D004483 3.6e-60 235.3 156 75.0
Lj1A793T50 Lonicera japonica HOM05D003834 ORTHO05D004483 3.6e-60 235.3 163 74.8
Ah.04g166460 Amaranthus hybridus HOM05D003834 ORTHO05D004483 1.0e-59 233.8 159 74.2
Carub.0001s4454 Capsella rubella HOM05D003834 ORTHO05D004483 1.0e-59 233.8 159 73.6
Glyma.02G298200 Glycine max HOM05D003834 ORTHO05D004483 1.0e-59 233.8 179 68.2
AL3G24810 Arabidopsis lyrata HOM05D003834 ORTHO05D004483 1.8e-59 233.0 159 73.6
AT3G13070 Arabidopsis thaliana HOM05D003834 ORTHO05D004483 1.8e-59 233.0 159 73.6
PSO541G6272 Papaver somniferum HOM05D003834 ORTHO05D004483 1.8e-59 233.0 159 74.2
PSO675G1367 Papaver somniferum HOM05D003834 ORTHO05D004483 1.8e-59 233.0 159 74.2
ATR0712G125 Amborella trichopoda HOM05D003834 ORTHO05D004483 2.3e-59 232.6 159 73.6
DCAR_012909 Daucus carota HOM05D003834 ORTHO05D004483 2.3e-59 232.6 159 74.2
PGR031G3702 Punica granatum HOM05D003834 ORTHO05D004483 2.3e-59 232.6 162 74.7
THA.LOC104822741 Tarenaya hassleriana HOM05D003834 ORTHO05D004483 2.3e-59 232.6 160 75.6
MSTRG.6988 Avicennia marina HOM05D003834 ORTHO05D004483 3.0e-59 232.3 159 74.2
Carub.0003s1241 Capsella rubella HOM05D003834 ORTHO05D004483 3.0e-59 232.3 159 73.6
AL1G64090 Arabidopsis lyrata HOM05D003834 ORTHO05D004483 3.9e-59 231.9 159 74.8
MSTRG.15783 Avicennia marina HOM05D003834 ORTHO05D004483 6.7e-59 231.1 159 72.3
Eucgr.F03700 Eucalyptus grandis HOM05D003834 ORTHO05D004483 1.1e-58 230.3 164 73.2
Gohir.A13G134601 Gossypium hirsutum HOM05D003834 ORTHO05D004483 2.0e-58 229.6 158 74.1
EL10Ac4g07610 Beta vulgaris HOM05D003834 ORTHO05D004483 2.6e-58 229.2 151 74.8
AUR62017064 Chenopodium quinoa HOM05D003834 ORTHO05D004483 4.4e-58 228.4 159 73.0
AUR62040651 Chenopodium quinoa HOM05D003834 ORTHO05D004483 4.4e-58 228.4 159 73.0
Lsat_1_v5_gn_7_113161 Lactuca sativa HOM05D003834 ORTHO05D004483 5.7e-58 228.0 133 82.0
HanXRQChr04g0126521 Helianthus annuus HOM05D003834 ORTHO05D004483 9.7e-58 227.3 159 73.6
Lsat_1_v5_gn_7_95440 Lactuca sativa HOM05D003834 ORTHO05D004483 9.7e-58 227.3 158 73.4
Sed0024668 Sechium edule HOM05D003834 ORTHO05D004483 1.7e-57 226.5 156 74.4
DCAR_019235 Daucus carota HOM05D003834 ORTHO05D004483 1.1e-56 223.8 169 68.0
BcaB06g25489 Brassica carinata HOM05D003834 ORTHO05D004483 1.4e-56 223.4 127 86.6
BcaC05g29213 Brassica carinata HOM05D003834 ORTHO05D004483 1.4e-56 223.4 127 86.6
A05p36450 Brassica napus HOM05D003834 ORTHO05D004483 1.4e-56 223.4 127 86.6
C05p54850 Brassica napus HOM05D003834 ORTHO05D004483 1.4e-56 223.4 127 86.6
BolC5t34156H Brassica oleracea HOM05D003834 ORTHO05D004483 1.4e-56 223.4 127 86.6
BraA05t22447Z Brassica rapa HOM05D003834 ORTHO05D004483 1.4e-56 223.4 127 86.6
Sed0001420 Sechium edule HOM05D003834 ORTHO05D004483 1.4e-56 223.4 156 73.1
BcaC01g04008 Brassica carinata HOM05D003834 ORTHO05D004483 3.1e-56 222.2 126 87.3
A03p38030 Brassica napus HOM05D000121 ORTHO05D004483 3.1e-56 222.2 126 87.3
C03p46120 Brassica napus HOM05D003834 ORTHO05D004483 3.1e-56 222.2 126 87.3
BolC3t16884H Brassica oleracea HOM05D003834 ORTHO05D004483 3.1e-56 222.2 126 87.3
BraA03t12955Z Brassica rapa HOM05D003834 ORTHO05D004483 3.1e-56 222.2 126 87.3
SMO367G1292 Selaginella moellendorffii HOM05D003834 ORTHO05D004483 4.1e-56 221.9 157 71.3
CARHR087650 Cardamine hirsuta HOM05D003834 ORTHO05D004483 1.2e-55 220.3 127 85.0
AL1G64150 Arabidopsis lyrata HOM05D003834 ORTHO05D004483 2.0e-55 219.5 159 71.1
Sp3g11240 Schrenkiella parvula HOM05D003834 ORTHO05D004483 3.4e-55 218.8 159 72.3
Os03g0593200 Oryza sativa ssp. japonica HOM05D003834 ORTHO05D004483 5.9e-55 218.0 159 69.8
vmacro11558 Vaccinium macrocarpon HOM05D003834 ORTHO05D004483 1.3e-54 216.9 185 63.2
Thhalv10020238m.g Eutrema salsugineum HOM05D003834 ORTHO05D004483 2.2e-54 216.1 159 70.4
unitig_85.g27343 Utricularia gibba HOM05D003834 ORTHO05D004483 4.2e-53 211.8 159 69.2
Zm00001eb049810 Zea mays HOM05D003834 ORTHO05D004483 5.5e-53 211.5 159 67.3
ECA236G2833 Erigeron canadensis HOM05D003834 ORTHO05D004483 2.7e-52 209.1 160 68.1
HPP92_024890 Vanilla planifolia HOM05D003834 ORTHO05D004483 1.8e-51 206.5 150 69.3
Mapoly0112s0016 Marchantia polymorpha HOM05D003834 ORTHO05D004483 5.2e-51 204.9 127 78.7
Pp3c1_38160 Physcomitrium patens HOM05D003834 ORTHO05D004483 5.2e-51 204.9 167 61.7
Pp3c2_3830 Physcomitrium patens HOM05D003834 ORTHO05D004483 1.1e-50 203.8 168 61.3
Pp3c10_7850 Physcomitrium patens HOM05D003834 ORTHO05D004483 9.7e-50 200.7 136 70.6
SEGI_18466 Sequoiadendron giganteum HOM05D003834 ORTHO05D004483 1.7e-49 199.9 161 65.8
AagrBONN_evm.TU.Sc2ySwM_344.3938 Anthoceros agrestis HOM05D003834 ORTHO05D004483 1.9e-45 186.4 152 63.2
CBR_g22294 Chara braunii HOM05D003834 ORTHO05D004483 2.3e-43 179.5 140 62.1
Lj6g0012228 Lotus japonicus HOM05D003834 ORTHO05D004483 1.1e-40 170.6 121 71.1
Oeu044499.1 Olea europaea HOM05D003834 ORTHO05D004483 4.5e-39 165.2 168 57.7
CiPaw.11G201400 Carya illinoinensis HOM05D003834 ORTHO05D004483 1.0e-38 164.1 102 81.4
RcHm_v2.0_Chr5g0043091 Rosa chinensis HOM05D003834 ORTHO05D004483 4.4e-34 148.7 90 84.4
SGA_v2.0_scaffold456G51916 Striga asiatica HOM05D003834 ORTHO05D004483 1.7e-33 146.7 105 66.7
SGA_v2.0_scaffold456G51921 Striga asiatica HOM05D003834 ORTHO05D004483 3.7e-33 145.6 108 64.8
Oeu019606.1 Olea europaea HOM05D003834 ORTHO05D004483 1.0e-30 137.5 89 77.5
Lj6g0000188 Lotus japonicus HOM05D000121 ORTHO05D000102 4.2e-29 132.1 146 50.7
SGA_v2.0_scaffold304G47939 Striga asiatica HOM05D003834 ORTHO05D004483 4.2e-29 132.1 97 66.0
Lj6g0018963 Lotus japonicus HOM05D003834 ORTHO05D004483 1.6e-28 130.2 87 72.4
DCAR_012924 Daucus carota HOM05D003834 ORTHO05D004483 1.5e-26 123.6 97 63.9
MCO02G018 Micromonas commoda HOM05D003834 ORTHO05D004483 7.0e-24 114.8 136 44.1
Actinidia00091 Actinidia chinensis HOM05D003834 ORTHO05D004483 3.7e-17 92.4 72 65.3
HanXRQChr11g0326201 Helianthus annuus HOM05D003834 ORTHO05D004483 3.5e-15 85.9 50 84.0
COL.COLO4_02610 Corchorus olitorius HOM05D003834 ORTHO05D044391 1.3e-14 84.0 112 37.5
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 1.2e-12 77.4 112 35.7
SEGI_20343 Sequoiadendron giganteum HOM05D003834 ORTHO05D004483 6.2e-12 75.1 52 73.1
PRCOL_00003811 Prasinoderma coloniale HOM05D003834 ORTHO05D004483 3.7e-09 65.9 130 39.2
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 5.4e-08 62.0 101 33.7
BcaNung05266 Brassica carinata HOM05D003834 ORTHO05D004483 3.0e-06 56.2 29 89.7


User provided reference genes

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