Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p005959 Quercus lobata HOM05D000033 ORTHO05D010119 4.7e-105 384.8 231 100.0
Cfa020235 Carpinus fangiana HOM05D000033 ORTHO05D010119 1.4e-48 197.2 259 58.3
Haze_09781 Corylus avellana HOM05D000033 ORTHO05D010119 1.4e-45 187.2 265 56.2
Duzib213G0429 Durio zibethinus HOM05D000033 ORTHO05D010119 3.3e-42 176.0 214 61.2
Dinv40831 Davidia involucrata HOM05D000033 ORTHO05D010119 2.0e-39 166.8 130 65.4
Thecc.07G023200 Theobroma cacao HOM05D000033 ORTHO05D010119 1.3e-38 164.1 190 64.7
Prupe.4G232000 Prunus persica HOM05D000033 ORTHO05D010119 2.7e-36 156.4 270 41.1
Gohir.A13G135000 Gossypium hirsutum HOM05D000033 ORTHO05D010119 4.6e-36 155.6 187 63.1
Gohir.D13G139400 Gossypium hirsutum HOM05D000033 ORTHO05D010119 2.3e-35 153.3 127 60.6
Gorai.013G156100 Gossypium raimondii HOM05D000033 ORTHO05D010119 5.1e-35 152.1 128 60.2
COL.COLO4_09779 Corchorus olitorius HOM05D000033 ORTHO05D010119 1.9e-34 150.2 187 60.4
Glyma.02G297100 Glycine max HOM05D000033 ORTHO05D010119 2.5e-34 149.8 129 57.4
Ciclev10010218m.g Citrus clementina HOM05D000033 ORTHO05D010119 5.6e-34 148.7 119 61.3
MD11G1205400 Malus domestica HOM05D000033 ORTHO05D010119 3.6e-33 146.0 270 39.3
Manes.03G137400 Manihot esculenta HOM05D000033 ORTHO05D010119 4.8e-33 145.6 118 65.3
Gohir.D01G073000 Gossypium hirsutum HOM05D000033 ORTHO05D010119 6.2e-33 145.2 129 57.4
FAN25G2758 Fragaria x ananassa HOM05D000033 ORTHO05D010119 2.4e-32 143.3 211 43.6
Potri.011G088000 Populus trichocarpa HOM05D000033 ORTHO05D010119 2.4e-32 143.3 129 56.6
Gorai.002G096000 Gossypium raimondii HOM05D000033 ORTHO05D010119 3.1e-32 142.9 129 56.6
Gohir.A01G086800 Gossypium hirsutum HOM05D000033 ORTHO05D010119 4.0e-32 142.5 129 55.8
FAN25G0080 Fragaria x ananassa HOM05D000033 ORTHO05D010119 1.2e-31 141.0 211 42.7
RcHm_v2.0_Chr5g0042511 Rosa chinensis HOM05D000033 ORTHO05D010119 1.2e-31 141.0 210 43.3
FAN21G2377 Fragaria x ananassa HOM05D000033 ORTHO05D010119 5.8e-31 138.7 129 58.1
FAN16G1389 Fragaria x ananassa HOM05D000033 ORTHO05D010119 7.6e-31 138.3 211 41.7
Peaxi162Scf00285g00927 Petunia axillaris HOM05D000033 ORTHO05D010119 3.8e-30 136.0 123 55.3
FAN11G0982 Fragaria x ananassa HOM05D000033 ORTHO05D010119 6.4e-30 135.2 211 41.7
FvH4_3g23970 Fragaria vesca HOM05D000033 ORTHO05D010119 2.4e-29 133.3 211 41.2
LjContig00272g0022031 Lotus japonicus HOM05D000033 ORTHO05D010119 2.4e-29 133.3 130 53.1
Nitab4.5_0000461g0030 Nicotiana tabacum HOM05D000033 ORTHO05D010119 2.7e-28 129.8 124 54.0
Sopen07g033450 Solanum pennellii HOM05D000033 ORTHO05D010119 3.5e-28 129.4 123 52.0
Hma1.2p1_0036F.1_g022780 Hydrangea macrophylla HOM05D000033 ORTHO05D010119 4.6e-28 129.0 93 66.7
Actinidia39074 Actinidia chinensis HOM05D000033 ORTHO05D010119 7.9e-28 128.3 128 54.7
Phvul.008G275000 Phaseolus vulgaris HOM05D000033 ORTHO05D010119 7.9e-28 128.3 130 56.2
Solyc07g065240.3 Solanum lycopersicum HOM05D000033 ORTHO05D010119 7.9e-28 128.3 123 51.2
PGSC0003DMG400022189 Solanum tuberosum HOM05D000033 ORTHO05D010119 7.9e-28 128.3 123 52.0
TAR624G1216 Trochodendron aralioides HOM05D000033 ORTHO05D010119 1.0e-27 127.9 112 56.2
VMungo0647G0231 Vigna mungo HOM05D000033 ORTHO05D010119 1.0e-27 127.9 118 59.3
Nitab4.5_0008232g0010 Nicotiana tabacum HOM05D000033 ORTHO05D010119 3.9e-27 125.9 123 52.8
Lj8A176T67 Lonicera japonica HOM05D000033 ORTHO05D010119 6.7e-27 125.2 125 49.6
TWI39G0153 Tripterygium wilfordii HOM05D000033 ORTHO05D010119 8.7e-27 124.8 127 54.3
ClCG09G021140 Citrullus lanatus HOM05D000033 ORTHO05D010119 1.1e-26 124.4 128 53.9
CANSAT11G1838 Cannabis sativa HOM05D000033 ORTHO05D010119 1.9e-26 123.6 130 51.5
Actinidia35385 Actinidia chinensis HOM05D000033 ORTHO05D010119 5.6e-26 122.1 128 55.5
CAN.G337.32 Capsicum annuum HOM05D000033 ORTHO05D010119 1.3e-25 120.9 103 56.3
Sed0021336 Sechium edule HOM05D000033 ORTHO05D010119 1.5e-23 114.0 112 52.7
Medtr5g094380 Medicago truncatula HOM05D000033 ORTHO05D010119 8.4e-22 108.2 102 56.9
Cpa.g.sc12.199 Carica papaya HOM05D000033 ORTHO05D010119 1.1e-21 107.8 116 54.3
MBI16_g11550_MAGBIO Magnolia biondii HOM05D000033 ORTHO05D010119 1.4e-21 107.5 122 51.6
arahy.Tifrunner.gnm1.ann1.N3INHP Arachis hypogaea HOM05D000033 ORTHO05D010119 7.9e-20 101.7 107 50.5
Cc05_g14620 Coffea canephora HOM05D000033 ORTHO05D010119 3.9e-19 99.4 119 47.1
PGR083G0088 Punica granatum HOM05D000033 ORTHO05D010119 5.1e-19 99.0 131 41.2
TPR.G31725 Trifolium pratense HOM05D000033 ORTHO05D010119 8.7e-19 98.2 108 49.1
Psat0s2739g0080 Pisum sativum HOM05D000033 ORTHO05D010119 1.3e-17 94.4 99 52.5
ECA236G2717 Erigeron canadensis HOM05D000033 ORTHO05D010119 4.0e-16 89.4 84 48.8
MELO3C024912.2 Cucumis melo HOM05D000033 ORTHO05D010119 5.3e-16 89.0 79 60.8
Oeu005973.1 Olea europaea HOM05D000033 ORTHO05D010119 9.0e-16 88.2 69 60.9
MD03G1189100 Malus domestica HOM05D000033 ORTHO05D010119 4.5e-15 85.9 152 58.6
CsaV3_7G018430 Cucumis sativus L. HOM05D000033 ORTHO05D010119 5.8e-15 85.5 78 57.7
Oeu054325.1 Olea europaea HOM05D000033 ORTHO05D010119 7.1e-13 78.6 67 56.7
ATR1149G145 Amborella trichopoda HOM05D000033 ORTHO05D010119 1.2e-12 77.8 113 37.2
Gohir.D09G166300 Gossypium hirsutum HOM05D000033 ORTHO05D004097 1.6e-12 77.4 122 37.7
Gohir.A09G170600 Gossypium hirsutum HOM05D000033 ORTHO05D004097 4.6e-12 75.9 122 36.1
Gorai.006G188100 Gossypium raimondii HOM05D000033 ORTHO05D004097 7.9e-12 75.1 122 36.1
Eucgr.K02865 Eucalyptus grandis HOM05D000033 ORTHO05D004097 1.0e-11 74.7 87 46.0
Duzib205G1293 Durio zibethinus HOM05D000033 ORTHO05D004097 2.5e-10 70.1 122 36.1
PGR044G1648 Punica granatum HOM05D000033 ORTHO05D004097 5.7e-10 68.9 119 35.3
Peaxi162Scf00496g00815 Petunia axillaris HOM05D000033 ORTHO05D004097 7.4e-10 68.6 118 33.9
DCAR_016494 Daucus carota HOM05D000033 ORTHO05D004097 1.6e-09 67.4 145 33.1
COL.COLO4_34070 Corchorus olitorius HOM05D000033 ORTHO05D004097 2.2e-09 67.0 117 37.6
HanXRQChr09g0272331 Helianthus annuus HOM05D000033 ORTHO05D004097 2.2e-09 67.0 96 37.5
Hma1.2p1_2497F.1_g323350 Hydrangea macrophylla HOM05D000033 ORTHO05D004097 2.2e-09 67.0 120 35.0
Gohir.D07G066500 Gossypium hirsutum HOM05D000033 ORTHO05D004097 2.8e-09 66.6 122 34.4
Actinidia04978 Actinidia chinensis HOM05D000033 ORTHO05D004097 3.7e-09 66.2 75 45.3
Cc00_g22560 Coffea canephora HOM05D000033 ORTHO05D004097 3.7e-09 66.2 113 35.4
Duzib084G0673 Durio zibethinus HOM05D000033 ORTHO05D004097 3.7e-09 66.2 118 35.6
Lsat_1_v5_gn_1_26480 Lactuca sativa HOM05D000033 ORTHO05D004097 3.7e-09 66.2 95 41.1
Sabra12G0055900 Salix brachista HOM05D000033 ORTHO05D004097 4.8e-09 65.9 119 37.0
Dinv20680 Davidia involucrata HOM05D000033 ORTHO05D004097 6.3e-09 65.5 117 33.3
Aqoxy3G00952 Aquilegia oxysepala HOM05D000033 ORTHO05D004097 8.2e-09 65.1 75 42.7
Cpa.g.sc124.28 Carica papaya HOM05D000033 ORTHO05D004097 8.2e-09 65.1 117 35.9
Potri.012G078100 Populus trichocarpa HOM05D000033 ORTHO05D004097 8.2e-09 65.1 121 36.4
Solyc03g059020.3 Solanum lycopersicum HOM05D000570 ORTHO05D005344 8.2e-09 65.1 109 36.7
Sopen03g013070 Solanum pennellii HOM05D000570 ORTHO05D005344 8.2e-09 65.1 109 36.7
DCAR_031304 Daucus carota HOM05D000033 ORTHO05D004097 1.1e-08 64.7 124 33.9
Gohir.A07G015700 Gossypium hirsutum HOM05D000033 ORTHO05D002890 1.1e-08 64.7 105 36.2
HanXRQChr02g0037171 Helianthus annuus HOM05D000033 ORTHO05D004097 1.1e-08 64.7 75 45.3
Oeu014507.1 Olea europaea HOM05D000033 ORTHO05D004097 1.4e-08 64.3 75 38.7
Rhsim12G0162900 Rhododendron simsii HOM05D000033 ORTHO05D004097 1.8e-08 63.9 121 38.8
HanXRQChr16g0503641 Helianthus annuus HOM05D000033 ORTHO05D004097 2.4e-08 63.5 96 36.5
Psat5g113400 Pisum sativum HOM05D000033 ORTHO05D004097 2.4e-08 63.5 75 46.7
TPR.G12416 Trifolium pratense HOM05D000029 ORTHO05D002500 2.4e-08 63.5 122 32.0
Gorai.001G016300 Gossypium raimondii HOM05D000033 ORTHO05D002890 3.1e-08 63.2 102 37.3
GSVIVG01007793001 Vitis vinifera HOM05D000086 ORTHO05D004097 3.1e-08 63.2 75 45.3
CANSAT25G3834 Cannabis sativa HOM05D000029 ORTHO05D002500 5.3e-08 62.4 105 36.2
Lj1g0022926 Lotus japonicus HOM05D000033 ORTHO05D004097 6.9e-08 62.0 117 34.2
Peaxi162Scf00017g02331 Petunia axillaris HOM05D000033 ORTHO05D004097 6.9e-08 62.0 97 36.1
PGSC0003DMG400024485 Solanum tuberosum HOM05D000033 ORTHO05D004097 6.9e-08 62.0 92 38.0
TPR.G24017 Trifolium pratense HOM05D000033 ORTHO05D004097 6.9e-08 62.0 103 39.8
Cc02_g32410 Coffea canephora HOM05D000033 ORTHO05D004097 9.0e-08 61.6 96 38.5
Lj5A122T97 Lonicera japonica HOM05D000033 ORTHO05D004097 9.0e-08 61.6 120 34.2
arahy.Tifrunner.gnm1.ann1.TB9JY1 Arachis hypogaea HOM05D000033 ORTHO05D004097 1.2e-07 61.2 74 41.9
arahy.Tifrunner.gnm1.ann1.TU6B9Y Arachis hypogaea HOM05D000033 ORTHO05D004097 1.2e-07 61.2 74 41.9
Gohir.A07G061800 Gossypium hirsutum HOM05D000033 ORTHO05D004097 1.2e-07 61.2 75 42.7
Nitab4.5_0000499g0010 Nicotiana tabacum HOM05D000033 ORTHO05D004097 1.2e-07 61.2 107 35.5
Solyc03g114080.2 Solanum lycopersicum HOM05D000033 ORTHO05D004097 1.2e-07 61.2 121 32.2
Sopen03g033140 Solanum pennellii HOM05D000033 ORTHO05D004097 1.2e-07 61.2 92 38.0
Medtr3g110860 Medicago truncatula HOM05D000029 ORTHO05D002500 1.5e-07 60.8 121 32.2
CSS0006799 Camellia sinensis var. sinensis HOM05D000033 ORTHO05D004097 2.0e-07 60.5 75 42.7
Medtr3g078250 Medicago truncatula HOM05D000033 ORTHO05D004097 2.0e-07 60.5 103 39.8
Ca_16201_v3 Cicer arietinum L. HOM05D000033 ORTHO05D004097 3.4e-07 59.7 75 40.0
Ciclev10024093m.g Citrus clementina HOM05D000086 ORTHO05D004097 4.5e-07 59.3 75 44.0
FAN04G0901 Fragaria x ananassa HOM05D000033 ORTHO05D004097 4.5e-07 59.3 116 34.5
FAN18G4423 Fragaria x ananassa HOM05D000033 ORTHO05D004097 4.5e-07 59.3 116 34.5
Nitab4.5_0001422g0040 Nicotiana tabacum HOM05D000033 ORTHO05D004097 4.5e-07 59.3 92 38.0
Cpa.g.sc124.27 Carica papaya HOM05D000033 ORTHO05D004097 5.9e-07 58.9 67 44.8
FAN08G1315 Fragaria x ananassa HOM05D000033 ORTHO05D004097 5.9e-07 58.9 116 34.5
AUR62020651 Chenopodium quinoa HOM05D000033 ORTHO05D001317 7.7e-07 58.5 112 29.5
Gohir.A05G142300 Gossypium hirsutum HOM05D000570 ORTHO05D001174 7.7e-07 58.5 104 38.5
Gohir.D07G015400 Gossypium hirsutum HOM05D000033 ORTHO05D002890 7.7e-07 58.5 102 36.3
Gorai.001G070200 Gossypium raimondii HOM05D000033 ORTHO05D004097 7.7e-07 58.5 75 40.0
Lj1g0009505 Lotus japonicus HOM05D000029 ORTHO05D002500 7.7e-07 58.5 114 28.9
MD00G1171500 Malus domestica HOM05D000033 ORTHO05D004097 7.7e-07 58.5 118 34.7
MD06G1177700 Malus domestica HOM05D000033 ORTHO05D004097 7.7e-07 58.5 118 34.7
Rhsim08G0169800 Rhododendron simsii HOM05D000033 ORTHO05D004097 7.7e-07 58.5 119 28.6
CiPaw.15G156700 Carya illinoinensis HOM05D000033 ORTHO05D001317 1.0e-06 58.2 98 33.7
MD14G1184300 Malus domestica HOM05D000033 ORTHO05D004097 1.0e-06 58.2 97 35.1
MSTRG.10469 Avicennia marina HOM05D000033 ORTHO05D001317 1.3e-06 57.8 112 33.9
Eucgr.B00352 Eucalyptus grandis HOM05D000033 ORTHO05D004097 1.3e-06 57.8 75 42.7
Peaxi162Scf00258g00013 Petunia axillaris HOM05D000570 ORTHO05D005344 1.3e-06 57.8 87 37.9
Gohir.A06G142200 Gossypium hirsutum HOM05D000570 ORTHO05D001174 1.7e-06 57.4 106 36.8
Lsat_1_v5_gn_4_73000 Lactuca sativa HOM05D000033 ORTHO05D004097 1.7e-06 57.4 97 34.0
Manes.14G068200 Manihot esculenta HOM05D000033 ORTHO05D004097 1.7e-06 57.4 116 33.6
PSO017G0800 Papaver somniferum HOM05D000033 ORTHO05D004097 1.7e-06 57.4 67 47.8
Sed0027641 Sechium edule HOM05D000033 ORTHO05D002890 1.7e-06 57.4 90 37.8
Ah.11g044130 Amaranthus hybridus HOM05D000033 ORTHO05D001317 2.2e-06 57.0 110 31.8
Nitab4.5_0000016g0310 Nicotiana tabacum HOM05D000570 ORTHO05D005344 2.2e-06 57.0 61 47.5
Atru.chr9.2431 Acer truncatum HOM05D000033 ORTHO05D004097 2.9e-06 56.6 68 42.6
arahy.Tifrunner.gnm1.ann1.X13C0W Arachis hypogaea HOM05D000033 ORTHO05D004097 2.9e-06 56.6 125 36.0
CiPaw.15G152700 Carya illinoinensis HOM05D000029 ORTHO05D002500 2.9e-06 56.6 110 34.5
Nitab4.5_0008632g0010 Nicotiana tabacum HOM05D000033 ORTHO05D001317 2.9e-06 56.6 109 33.0
Oeu015174.2 Olea europaea HOM05D000033 ORTHO05D001614 2.9e-06 56.6 117 29.9
Prupe.5G176900 Prunus persica HOM05D000033 ORTHO05D004097 2.9e-06 56.6 91 37.4
AL7G20840 Arabidopsis lyrata HOM05D000033 ORTHO05D001317 3.8e-06 56.2 108 33.3
MBI15_g19750_MAGBIO Magnolia biondii HOM05D000033 ORTHO05D004097 3.8e-06 56.2 94 36.2
SalBow2G1168 Salvia bowleyana HOM05D000033 ORTHO05D004097 3.8e-06 56.2 88 35.2
C07p09250 Brassica napus HOM05D000033 ORTHO05D001317 5.0e-06 55.8 106 36.8
BolC7t41343H Brassica oleracea HOM05D000033 ORTHO05D001317 5.0e-06 55.8 106 36.8
CAN.G654.5 Capsicum annuum HOM05D000570 ORTHO05D005344 5.0e-06 55.8 61 45.9
COL.COLO4_35350 Corchorus olitorius HOM05D000029 ORTHO05D002500 5.0e-06 55.8 121 31.4
Duzib114G0025 Durio zibethinus HOM05D000033 ORTHO05D001317 5.0e-06 55.8 106 33.0
Nitab4.5_0003572g0030 Nicotiana tabacum HOM05D000570 ORTHO05D005344 5.0e-06 55.8 87 35.6
Aa31sc980G10 Aethionema arabicum HOM05D000033 ORTHO05D001317 6.5e-06 55.5 88 44.3
AT4G31250 Arabidopsis thaliana HOM05D000033 ORTHO05D001317 6.5e-06 55.5 55 47.3
A08p09700 Brassica napus HOM05D000033 ORTHO05D001317 6.5e-06 55.5 115 36.5
BraA08t32966Z Brassica rapa HOM05D000033 ORTHO05D001317 6.5e-06 55.5 115 36.5
QL10p013606 Quercus lobata HOM05D000033 ORTHO05D004097 6.5e-06 55.5 75 37.3
QL11p027050 Quercus lobata HOM05D000029 ORTHO05D002500 6.5e-06 55.5 118 33.1
Haze_03799 Corylus avellana HOM05D002919 ORTHO05D003327 8.5e-06 55.1 96 38.5
Thecc.09G073900 Theobroma cacao HOM05D000033 ORTHO05D002890 8.5e-06 55.1 103 35.0


User provided reference genes

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