Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p005504 Quercus lobata HOM05D006454 ORTHO05D008024 3.0e-205 718.8 503 100.0
Haze_09788 Corylus avellana HOM05D006454 ORTHO05D008024 8.0e-134 481.5 531 76.1
Cfa020229 Carpinus fangiana HOM05D006454 ORTHO05D008024 6.3e-131 471.9 536 74.4
FAN21G2064 Fragaria x ananassa HOM05D006454 ORTHO05D008024 2.3e-120 436.8 507 71.8
MD11G1204700 Malus domestica HOM05D006454 ORTHO05D008024 2.3e-120 436.8 508 72.6
FAN25G3289 Fragaria x ananassa HOM05D006454 ORTHO05D008024 5.5e-119 432.2 507 71.6
FAN25G1123 Fragaria x ananassa HOM05D006454 ORTHO05D008024 7.2e-119 431.8 507 71.6
FvH4_3g24060 Fragaria vesca HOM05D006454 ORTHO05D008024 1.6e-118 430.6 507 71.4
FAN11G0689 Fragaria x ananassa HOM05D006454 ORTHO05D008024 1.6e-118 430.6 507 71.4
RcHm_v2.0_Chr5g0042641 Rosa chinensis HOM05D006454 ORTHO05D008024 9.8e-116 421.4 507 71.6
Prupe.4G234400 Prunus persica HOM05D006454 ORTHO05D008024 7.3e-111 405.2 491 70.9
Thecc.07G022300 Theobroma cacao HOM05D006454 ORTHO05D008024 1.0e-109 401.4 528 67.8
Gohir.D13G138500 Gossypium hirsutum HOM05D006454 ORTHO05D008024 4.9e-107 392.5 484 71.7
Gohir.A13G134866 Gossypium hirsutum HOM05D006454 ORTHO05D008024 6.4e-107 392.1 482 71.4
MELO3C024909.2 Cucumis melo HOM05D006454 ORTHO05D008024 1.4e-106 391.0 534 64.6
Gorai.013G155100 Gossypium raimondii HOM05D006454 ORTHO05D008024 7.0e-106 388.7 528 67.2
CiPaw.12G136000 Carya illinoinensis HOM05D006454 ORTHO05D008024 1.3e-104 384.4 534 62.7
TAR626G0559 Trochodendron aralioides HOM05D006454 ORTHO05D008024 3.9e-104 382.9 509 68.2
Aa31LG3G11530 Aethionema arabicum HOM05D006454 ORTHO05D008024 6.6e-104 382.1 493 67.3
Atru.chr2.3605 Acer truncatum HOM05D006454 ORTHO05D008024 7.3e-103 378.6 494 70.6
MD03G1188700 Malus domestica HOM05D006454 ORTHO05D008024 2.1e-102 377.1 502 67.1
C03p16380 Brassica napus HOM05D006454 ORTHO05D008024 2.3e-101 373.6 469 69.9
BcaC01g06383 Brassica carinata HOM05D006454 ORTHO05D008024 3.1e-101 373.2 469 69.9
Phvul.008G275700 Phaseolus vulgaris HOM05D006454 ORTHO05D008024 4.0e-101 372.9 460 74.1
Lalb_Chr04g0247971 Lupinus albus HOM05D006454 ORTHO05D008024 5.2e-101 372.5 462 70.1
Sp6g17500 Schrenkiella parvula HOM05D006454 ORTHO05D008024 3.4e-100 369.8 504 65.7
AL8G31150 Arabidopsis lyrata HOM05D006454 ORTHO05D008024 4.4e-100 369.4 474 68.8
BolC3t14060H Brassica oleracea HOM05D006454 ORTHO05D008024 4.4e-100 369.4 470 69.6
A03p13940 Brassica napus HOM05D006454 ORTHO05D008024 7.5e-100 368.6 474 70.3
BraA03t10695Z Brassica rapa HOM05D006454 ORTHO05D008024 7.5e-100 368.6 474 70.3
CANSAT11G2145 Cannabis sativa HOM05D006454 ORTHO05D008024 1.3e-99 367.9 533 64.0
BcaB01g04358 Brassica carinata HOM05D006454 ORTHO05D008024 2.9e-99 366.7 478 69.9
Carub.0008s1595 Capsella rubella HOM05D006454 ORTHO05D008024 6.4e-99 365.5 506 65.8
THA.LOC104813444 Tarenaya hassleriana HOM05D006454 ORTHO05D008024 1.6e-97 360.9 485 68.0
Ciclev10008511m.g Citrus clementina HOM05D006454 ORTHO05D008024 1.7e-96 357.5 536 64.2
MBI16_g11566_MAGBIO Magnolia biondii HOM05D006454 ORTHO05D008024 2.3e-96 357.1 499 67.1
DCAR_013215 Daucus carota HOM05D006454 ORTHO05D008024 1.1e-95 354.8 466 71.0
ECA246G2030 Erigeron canadensis HOM05D006454 ORTHO05D008024 1.9e-95 354.0 506 62.1
Thhalv10013311m.g Eutrema salsugineum HOM05D006454 ORTHO05D008024 3.6e-94 349.7 501 55.9
Medtr5g094610 Medicago truncatula HOM05D006454 ORTHO05D008024 4.7e-94 349.4 522 64.8
TPR.G14154 Trifolium pratense HOM05D006454 ORTHO05D008024 6.2e-94 349.0 454 71.6
Manes.15G063200 Manihot esculenta HOM05D006454 ORTHO05D008024 1.1e-93 348.2 469 68.0
AT5G55580 Arabidopsis thaliana HOM05D006454 ORTHO05D008024 1.2e-92 344.7 515 64.1
Nitab4.5_0000163g0310 Nicotiana tabacum HOM05D006454 ORTHO05D008024 7.5e-92 342.0 481 64.9
LjContig00272g0005215 Lotus japonicus HOM05D006454 ORTHO05D008024 9.9e-92 341.7 455 71.0
Ca_06374_v3 Cicer arietinum L. HOM05D006454 ORTHO05D000136 1.7e-91 340.9 402 73.9
Glyma.14G015800 Glycine max HOM05D006454 ORTHO05D008024 3.7e-91 339.7 477 67.3
CiPaw.11G201000 Carya illinoinensis HOM05D006454 ORTHO05D008024 4.9e-91 339.3 384 77.6
Potri.001G361800 Populus trichocarpa HOM05D006454 ORTHO05D008024 8.3e-91 338.6 480 64.0
HanXRQChr08g0235811 Helianthus annuus HOM05D006454 ORTHO05D008024 1.9e-90 337.4 467 65.3
Sabra11G0073300 Salix brachista HOM05D006454 ORTHO05D008024 2.4e-90 337.0 520 63.3
TWI39G0040 Tripterygium wilfordii HOM05D006454 ORTHO05D008024 3.2e-90 336.7 477 66.9
ClCG09G021120 Citrullus lanatus HOM05D006454 ORTHO05D008024 7.1e-90 335.5 536 61.9
Sed0021870 Sechium edule HOM05D006454 ORTHO05D008024 9.2e-90 335.1 547 62.2
SalBow8G0989 Salvia bowleyana HOM05D006454 ORTHO05D008024 2.1e-89 334.0 533 59.7
CsaV3_7G018450 Cucumis sativus L. HOM05D006454 ORTHO05D008024 2.7e-89 333.6 533 61.4
Migut.M01675 Erythranthe guttata HOM05D006454 ORTHO05D008024 3.5e-89 333.2 495 60.4
arahy.Tifrunner.gnm1.ann1.AYWF3K Arachis hypogaea HOM05D006454 ORTHO05D008024 6.0e-89 332.4 451 68.1
CARHR268890 Cardamine hirsuta HOM05D006454 ORTHO05D008024 1.0e-88 331.6 326 86.5
Sabra11G0078800 Salix brachista HOM05D006454 ORTHO05D008024 2.3e-88 330.5 516 63.6
CSS0002313 Camellia sinensis var. sinensis HOM05D006454 ORTHO05D000036 1.9e-87 327.4 395 72.7
arahy.Tifrunner.gnm1.ann1.IBL7LR Arachis hypogaea HOM05D006454 ORTHO05D008024 5.6e-87 325.9 449 67.7
Solyc12g015640.2 Solanum lycopersicum HOM05D006454 ORTHO05D008024 5.6e-87 325.9 453 66.9
VMungo0647G1066 Vigna mungo HOM05D006454 ORTHO05D008024 1.2e-86 324.7 469 67.4
Glyma.02G297900 Glycine max HOM05D006454 ORTHO05D008024 8.1e-86 322.0 472 66.1
Aqoxy4G02215 Aquilegia oxysepala HOM05D006454 ORTHO05D008024 8.9e-85 318.5 508 62.8
Lsat_1_v5_gn_5_8060 Lactuca sativa HOM05D006454 ORTHO05D008024 1.2e-84 318.2 501 60.5
Actinidia05032 Actinidia chinensis HOM05D006454 ORTHO05D008024 3.4e-84 316.6 531 60.8
Eucgr.F03524 Eucalyptus grandis HOM05D006454 ORTHO05D008024 3.4e-84 316.6 469 67.2
Oeu054328.1 Olea europaea HOM05D006454 ORTHO05D008024 5.8e-84 315.8 532 58.5
Sopen12g007540 Solanum pennellii HOM05D006454 ORTHO05D008024 9.9e-84 315.1 450 67.3
CAN.G1239.14 Capsicum annuum HOM05D006454 ORTHO05D008024 1.1e-82 311.6 460 66.3
Nitab4.5_0002517g0040 Nicotiana tabacum HOM05D006454 ORTHO05D008024 1.9e-82 310.8 473 64.5
CDE12G0728 Ceratophyllum demersum HOM05D006454 ORTHO05D008024 5.4e-82 309.3 476 66.4
Cc05_g14700 Coffea canephora HOM05D006454 ORTHO05D008024 2.3e-80 303.9 535 57.2
Lj1A885G30 Lonicera japonica HOM05D006454 ORTHO05D008024 6.6e-80 302.4 408 69.4
Peaxi162Scf00955g00214 Petunia axillaris HOM05D006454 ORTHO05D008024 1.1e-79 301.6 471 63.3
vmacro11560 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 1.1e-79 301.6 405 70.9
GSVIVG01037780001 Vitis vinifera HOM05D006454 ORTHO05D008024 9.6e-79 298.5 459 60.6
ATR1149G086 Amborella trichopoda HOM05D006454 ORTHO05D008024 1.2e-78 298.1 510 60.4
AUR62017060 Chenopodium quinoa HOM05D006454 ORTHO05D008024 2.8e-78 297.0 444 63.7
AUR62040658 Chenopodium quinoa HOM05D006454 ORTHO05D008024 6.2e-78 295.8 454 60.4
PSO541G2941 Papaver somniferum HOM05D006454 ORTHO05D008024 2.4e-77 293.9 542 57.2
PSO675G2716 Papaver somniferum HOM05D006454 ORTHO05D008024 2.4e-77 293.9 542 56.3
MSTRG.6985 Avicennia marina HOM05D006454 ORTHO05D008024 1.2e-76 291.6 483 60.5
Psat2g008800 Pisum sativum HOM05D006454 ORTHO05D008024 2.0e-76 290.8 452 63.3
Rhsim06G0226800 Rhododendron simsii HOM05D006454 ORTHO05D008024 4.9e-75 286.2 540 55.6
EL10Ac4g07613 Beta vulgaris HOM05D006454 ORTHO05D008024 3.2e-74 283.5 455 64.4
COL.COLO4_09787 Corchorus olitorius HOM05D006454 ORTHO05D008024 7.1e-74 282.3 451 63.9
Ah.04g166440 Amaranthus hybridus HOM05D006454 ORTHO05D008024 1.7e-72 277.7 450 64.2
Dinv40835 Davidia involucrata HOM05D006454 ORTHO05D008024 3.3e-71 273.5 292 85.6
PGR031G1939 Punica granatum HOM05D006454 ORTHO05D008024 1.6e-70 271.2 531 53.3
SGA_v2.0_scaffold171G38887 Striga asiatica HOM05D006454 ORTHO05D008024 9.3e-66 255.4 519 53.6
PGSC0003DMG401029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 1.2e-60 238.4 292 82.5
Sc16g0003560 Simmondsia chinensis HOM05D006454 ORTHO05D008024 4.5e-60 236.5 350 65.4
Hund01917 Selenicereus undatus HOM05D006454 ORTHO05D008024 6.0e-57 226.1 385 63.1
HPP92_007883 Vanilla planifolia HOM05D006454 ORTHO05D008024 1.8e-56 224.6 475 54.9
Actinidia00093 Actinidia chinensis HOM05D006454 ORTHO05D008024 3.0e-56 223.8 464 56.9
Cpa.g.sc12.193 Carica papaya HOM05D006454 ORTHO05D008024 5.6e-55 219.5 274 54.4
CAN.G489.2 Capsicum annuum HOM05D006454 ORTHO05D008024 3.1e-53 213.8 295 60.3
Oeu031063.1 Olea europaea HOM05D006454 ORTHO05D008024 6.0e-49 199.5 292 74.0
Hund01916 Selenicereus undatus HOM05D006454 ORTHO05D008024 7.7e-44 182.6 451 32.2
Prupe.4G234100 Prunus persica HOM05D006454 ORTHO05D008024 2.9e-43 180.6 234 82.1
BcaNung06723 Brassica carinata HOM05D000081 ORTHO05D008024 7.2e-42 176.0 321 49.5
Cpa.g.sc12.192 Carica papaya HOM05D006454 ORTHO05D008024 1.6e-41 174.9 119 89.1
Os07g0583200 Oryza sativa ssp. japonica HOM05D006454 ORTHO05D008024 2.7e-41 174.1 378 56.6
HPP92_007898 Vanilla planifolia HOM05D006454 ORTHO05D008024 3.6e-41 173.7 290 70.3
Zm00001eb107900 Zea mays HOM05D006454 ORTHO05D008024 3.0e-40 170.6 461 52.9
Nn1g07440 Nelumbo nucifera HOM05D006454 ORTHO05D008024 2.3e-32 144.4 481 33.9
unitig_899.g15274 Utricularia gibba HOM05D006454 ORTHO05D008024 1.7e-30 138.3 146 54.8
BolC2t07758H Brassica oleracea HOM05D006454 ORTHO05D008024 3.9e-24 117.1 147 49.7
vmacro10144 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 6.3e-22 109.8 329 31.6
Pp3c7_3780 Physcomitrium patens HOM05D006454 ORTHO05D008024 2.4e-21 107.8 323 53.9
Mapoly0042s0040 Marchantia polymorpha HOM05D006454 ORTHO05D008024 4.5e-20 103.6 383 46.0
BcaNung06724 Brassica carinata HOM05D006454 ORTHO05D008024 8.5e-19 99.4 103 52.4
SEGI_11937 Sequoiadendron giganteum HOM05D047912 ORTHO05D008024 1.1e-18 99.0 323 48.9
Pp3c11_22990 Physcomitrium patens HOM05D006454 ORTHO05D008024 1.6e-17 95.1 323 49.2
MCO01G181 Micromonas commoda HOM05D006454 ORTHO05D008024 6.5e-11 73.2 120 48.3
PRCOL_00000825 Prasinoderma coloniale HOM05D006454 ORTHO05D008024 8.0e-09 66.2 126 29.4
AagrBONN_evm.TU.Sc2ySwM_117.1902 Anthoceros agrestis HOM05D006454 ORTHO05D008024 2.0e-07 61.6 131 29.8


User provided reference genes

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