Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p005046 Quercus lobata HOM05D000031 ORTHO05D001033 4.5e-109 397.9 197 100.0
QL08p058293 Quercus lobata HOM05D000031 ORTHO05D001033 1.4e-57 226.9 309 47.9
QL08p005022 Quercus lobata HOM05D000031 ORTHO05D001033 8.2e-26 121.3 246 36.6
QL11p054265 Quercus lobata HOM05D000031 ORTHO05D001033 6.3e-18 95.1 118 54.2
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 4.1e-17 92.4 119 51.3
QL08p004500 Quercus lobata HOM05D000031 ORTHO05D001033 4.1e-17 92.4 136 48.5
QL08p004363 Quercus lobata HOM05D000031 ORTHO05D001033 1.5e-16 90.5 118 52.5
QL11p054297 Quercus lobata HOM05D000031 ORTHO05D001033 1.5e-16 90.5 118 52.5
QL05p025050 Quercus lobata HOM05D000031 ORTHO05D001033 4.5e-16 89.0 119 50.4
QL08p058318 Quercus lobata HOM05D000031 ORTHO05D001033 4.5e-16 89.0 119 49.6
QL08p004441 Quercus lobata HOM05D000031 ORTHO05D001033 7.7e-16 88.2 118 55.1
QL08p004686 Quercus lobata HOM05D001458 ORTHO05D007170 7.7e-16 88.2 119 50.4
QL08p004543 Quercus lobata HOM05D000031 ORTHO05D001033 1.3e-15 87.4 118 54.2
QL04p038933 Quercus lobata HOM05D000031 ORTHO05D001033 1.7e-15 87.0 118 48.3
QL08p004311 Quercus lobata HOM05D005924 ORTHO05D007290 2.2e-15 86.7 124 46.0
QL08p004316 Quercus lobata HOM05D000031 ORTHO05D001033 2.2e-15 86.7 124 46.0
QL06p028372 Quercus lobata HOM05D000031 ORTHO05D001033 3.8e-15 85.9 119 49.6
QL08p004652 Quercus lobata HOM05D000031 ORTHO05D001033 3.8e-15 85.9 119 47.9
QL08p004271 Quercus lobata HOM05D000031 ORTHO05D001033 1.1e-14 84.3 124 46.8
QL08p004370 Quercus lobata HOM05D000031 ORTHO05D001033 1.1e-14 84.3 118 48.3
QL11p054289 Quercus lobata HOM05D000031 ORTHO05D001033 1.1e-14 84.3 118 48.3
CiPaw.08G139000 Carya illinoinensis HOM05D000031 ORTHO05D001033 1.5e-14 84.0 124 45.2
QL08p004243 Quercus lobata HOM05D000031 ORTHO05D001033 5.5e-14 82.0 118 49.2
QL08p058262 Quercus lobata HOM05D000031 ORTHO05D001033 1.2e-13 80.9 118 44.9
CiPaw.07G039200 Carya illinoinensis HOM05D000031 ORTHO05D001033 6.1e-13 78.6 126 42.9
QL11p054347 Quercus lobata HOM05D000031 ORTHO05D001033 5.2e-12 75.5 120 45.0
QL08p004411 Quercus lobata HOM05D000031 ORTHO05D001033 8.8e-12 74.7 161 40.4
QL06p006004 Quercus lobata HOM05D000031 ORTHO05D001033 1.1e-11 74.3 309 27.8
CiPaw.08G148400 Carya illinoinensis HOM05D000031 ORTHO05D001033 2.6e-11 73.2 149 38.3
CiPaw.07G003000 Carya illinoinensis HOM05D000031 ORTHO05D001033 5.7e-11 72.0 305 27.2
CiPaw.08G148700 Carya illinoinensis HOM05D000031 ORTHO05D001033 7.4e-11 71.6 265 28.7
QL06p006038 Quercus lobata HOM05D000031 ORTHO05D001033 9.7e-11 71.2 131 38.9
CiPaw.08G148600 Carya illinoinensis HOM05D000031 ORTHO05D001033 5.3e-09 65.5 129 34.9
Dinv30778 Davidia involucrata HOM05D000031 ORTHO05D001033 7.0e-09 65.1 135 36.3
QL06p006014 Quercus lobata HOM05D000031 ORTHO05D001033 7.0e-09 65.1 118 39.0
CiPaw.08G138900 Carya illinoinensis HOM05D000031 ORTHO05D001033 1.2e-08 64.3 133 35.3
RcHm_v2.0_Chr7g0194481 Rosa chinensis HOM05D000031 ORTHO05D019088 1.6e-08 63.9 119 32.8
CSS0013346 Camellia sinensis var. sinensis HOM05D000031 ORTHO05D001033 4.5e-08 62.4 142 38.7
CSS0014114 Camellia sinensis var. sinensis HOM05D000031 ORTHO05D001033 5.9e-08 62.0 130 36.9
Dinv04072 Davidia involucrata HOM05D000031 ORTHO05D001033 5.9e-08 62.0 118 38.1
Dinv09508 Davidia involucrata HOM05D000031 ORTHO05D001033 5.9e-08 62.0 118 38.1
Nitab4.5_0002027g0060 Nicotiana tabacum HOM05D000031 ORTHO05D001033 5.9e-08 62.0 136 38.2
Rhsim11G0113700 Rhododendron simsii HOM05D000166 ORTHO05D000812 5.9e-08 62.0 195 31.8
Rhsim11G0114000 Rhododendron simsii HOM05D000166 ORTHO05D000812 5.9e-08 62.0 195 32.3
RcHm_v2.0_Chr7g0194561 Rosa chinensis HOM05D000031 ORTHO05D019088 5.9e-08 62.0 119 31.9
GSVIVG01034817001 Vitis vinifera HOM05D000080 ORTHO05D000053 5.9e-08 62.0 119 41.2
CSS0006391 Camellia sinensis var. sinensis HOM05D000031 ORTHO05D001033 7.7e-08 61.6 144 36.8
CSS0007836 Camellia sinensis var. sinensis HOM05D000031 ORTHO05D001033 7.7e-08 61.6 144 36.8
CiPaw.08G139200 Carya illinoinensis HOM05D000031 ORTHO05D001033 7.7e-08 61.6 153 32.0
Potri.013G020100 Populus trichocarpa HOM05D000031 ORTHO05D001033 7.7e-08 61.6 147 34.7
Ciclev10031940m.g Citrus clementina HOM05D000031 ORTHO05D001033 1.0e-07 61.2 119 39.5
Haze_12639 Corylus avellana HOM05D000031 ORTHO05D001033 1.3e-07 60.8 113 35.4
FAN05G1256 Fragaria x ananassa HOM05D000031 ORTHO05D000030 1.3e-07 60.8 202 30.7
MD10G1109800 Malus domestica HOM05D000031 ORTHO05D001033 1.7e-07 60.5 134 34.3
Haze_21401 Corylus avellana HOM05D000031 ORTHO05D001033 2.9e-07 59.7 46 56.5
HanXRQChr02g0052741 Helianthus annuus HOM05D000166 ORTHO05D000812 2.9e-07 59.7 158 34.2
QL06p038233 Quercus lobata HOM05D000031 ORTHO05D001033 2.9e-07 59.7 118 39.0
Ah.02g131940 Amaranthus hybridus HOM05D000260 ORTHO05D009354 3.8e-07 59.3 155 32.3
Nitab4.5_0002372g0020 Nicotiana tabacum HOM05D000031 ORTHO05D001033 3.8e-07 59.3 141 33.3
Zm00001eb232420 Zea mays HOM05D000106 ORTHO05D000160 3.8e-07 59.3 122 34.4
ATR0605G329 Amborella trichopoda HOM05D000031 ORTHO05D000030 5.0e-07 58.9 119 35.3
CiPaw.11G148000 Carya illinoinensis HOM05D000031 ORTHO05D001033 5.0e-07 58.9 115 40.0
Ciclev10005368m.g Citrus clementina HOM05D000031 ORTHO05D001033 5.0e-07 58.9 125 36.8
MBI15_g45223_MAGBIO Magnolia biondii HOM05D000031 ORTHO05D000030 5.0e-07 58.9 119 37.0
Nitab4.5_0004937g0010 Nicotiana tabacum HOM05D000031 ORTHO05D001033 5.0e-07 58.9 133 37.6
Prupe.8G149700 Prunus persica HOM05D001568 ORTHO05D009161 5.0e-07 58.9 140 32.1
Ciclev10005369m.g Citrus clementina HOM05D000031 ORTHO05D001033 6.5e-07 58.5 125 36.8
COL.COLO4_17486 Corchorus olitorius HOM05D000054 ORTHO05D000171 6.5e-07 58.5 156 29.5
Lsat_1_v5_gn_9_81561 Lactuca sativa HOM05D000166 ORTHO05D000812 6.5e-07 58.5 158 34.8
Sp1g25630 Schrenkiella parvula HOM05D000054 ORTHO05D000171 6.5e-07 58.5 119 33.6
TAR622G0892 Trochodendron aralioides HOM05D000054 ORTHO05D014777 6.5e-07 58.5 118 35.6
Aa31LG6G5910 Aethionema arabicum HOM05D000054 ORTHO05D000171 8.5e-07 58.2 133 30.8
FAN15G1926 Fragaria x ananassa HOM05D000031 ORTHO05D001033 8.5e-07 58.2 122 36.1
HanXRQChr09g0247821 Helianthus annuus HOM05D000166 ORTHO05D000812 8.5e-07 58.2 157 33.8
Hma1.2p1_1758F.1_g301130 Hydrangea macrophylla HOM05D000031 ORTHO05D001033 8.5e-07 58.2 140 30.7
Prupe.8G149400 Prunus persica HOM05D000031 ORTHO05D001033 8.5e-07 58.2 119 34.5
VMungo0251G0825 Vigna mungo HOM05D000022 ORTHO05D000744 8.5e-07 58.2 122 34.4
Eucgr.E04179 Eucalyptus grandis HOM05D000022 ORTHO05D000071 1.1e-06 57.8 175 29.7
AagrBONN_evm.TU.Sc2ySwM_344.4638 Anthoceros agrestis HOM05D000031 ORTHO05D002276 1.5e-06 57.4 120 33.3
BraA07t28824Z Brassica rapa HOM05D000054 ORTHO05D000171 1.5e-06 57.4 119 34.5
MELO3C010681.2 Cucumis melo HOM05D000022 ORTHO05D000744 1.5e-06 57.4 121 40.5
Sc06g0006900 Simmondsia chinensis HOM05D000260 ORTHO05D000318 1.5e-06 57.4 120 32.5
Ah.01g022970 Amaranthus hybridus HOM05D000237 ORTHO05D001145 1.9e-06 57.0 119 33.6
Ciclev10005345m.g Citrus clementina HOM05D000031 ORTHO05D001033 1.9e-06 57.0 118 34.7
HanXRQChr03g0085561 Helianthus annuus HOM05D000031 ORTHO05D000030 1.9e-06 57.0 118 40.7
Manes.10G008600 Manihot esculenta HOM05D000031 ORTHO05D001033 1.9e-06 57.0 119 37.8
Phvul.003G062600 Phaseolus vulgaris HOM05D000022 ORTHO05D000744 1.9e-06 57.0 122 32.8
Sabra13G0022400 Salix brachista HOM05D000031 ORTHO05D001033 1.9e-06 57.0 118 36.4
SalBow2G1915 Salvia bowleyana HOM05D000168 ORTHO05D010570 1.9e-06 57.0 121 30.6
Aa31LG6G5940 Aethionema arabicum HOM05D000054 ORTHO05D000171 2.5e-06 56.6 119 32.8
AT1G29740 Arabidopsis thaliana HOM05D000054 ORTHO05D000171 2.5e-06 56.6 119 33.6
C07p15780 Brassica napus HOM05D000054 ORTHO05D000171 2.5e-06 56.6 119 33.6
CANSAT35G1898 Cannabis sativa HOM05D000031 ORTHO05D000030 2.5e-06 56.6 123 35.8
Haze_10305 Corylus avellana HOM05D000031 ORTHO05D001033 2.5e-06 56.6 127 35.4
Lsat_1_v5_gn_2_57540 Lactuca sativa HOM05D000166 ORTHO05D000812 2.5e-06 56.6 157 33.8
Sopen05g001090 Solanum pennellii HOM05D000022 ORTHO05D000744 2.5e-06 56.6 125 33.6
TWI36G1317 Tripterygium wilfordii HOM05D000022 ORTHO05D000744 2.5e-06 56.6 39 66.7
C02p09030 Brassica napus HOM05D000106 ORTHO05D000160 3.2e-06 56.2 118 32.2
BolC7t42069H Brassica oleracea HOM05D000054 ORTHO05D000171 3.2e-06 56.2 119 32.8
BraA07t28821Z Brassica rapa HOM05D000054 ORTHO05D000171 3.2e-06 56.2 119 33.6
CSS0018357 Camellia sinensis var. sinensis HOM05D000031 ORTHO05D001033 3.2e-06 56.2 140 32.9
CAN.G1379.20 Capsicum annuum HOM05D000166 ORTHO05D000812 3.2e-06 56.2 129 34.1
CiPaw.05G187300 Carya illinoinensis HOM05D000022 ORTHO05D000744 3.2e-06 56.2 118 33.1
Ciclev10033856m.g Citrus clementina HOM05D000031 ORTHO05D001033 3.2e-06 56.2 118 33.9
FvH4_2g03431 Fragaria vesca HOM05D000106 ORTHO05D019088 3.2e-06 56.2 119 36.1
Hma1.2p1_0479F.1_g161440 Hydrangea macrophylla HOM05D000031 ORTHO05D000030 3.2e-06 56.2 118 34.7
Nitab4.5_0004524g0010 Nicotiana tabacum HOM05D000031 ORTHO05D001033 3.2e-06 56.2 197 30.5
Prupe.2G301100 Prunus persica HOM05D000427 ORTHO05D000386 3.2e-06 56.2 105 30.5
Sed0016153 Sechium edule HOM05D000106 ORTHO05D000160 3.2e-06 56.2 118 33.9
Solyc05g005070.2 Solanum lycopersicum HOM05D000022 ORTHO05D000744 3.2e-06 56.2 125 33.6
GSVIVG01036297001 Vitis vinifera HOM05D000031 ORTHO05D001033 3.2e-06 56.2 118 34.7
Ah.03g147830 Amaranthus hybridus HOM05D000031 ORTHO05D001033 4.2e-06 55.8 123 35.8
Cpa.g.sc5.119 Carica papaya HOM05D000031 ORTHO05D001864 4.2e-06 55.8 130 30.8
ECA236G1540 Erigeron canadensis HOM05D000166 ORTHO05D000812 4.2e-06 55.8 158 33.5
Eucgr.L02888 Eucalyptus grandis HOM05D000022 ORTHO05D000071 4.2e-06 55.8 174 30.5
Gorai.013G108800 Gossypium raimondii HOM05D000031 ORTHO05D000030 4.2e-06 55.8 118 35.6
Rhsim05G0047400 Rhododendron simsii HOM05D000046 ORTHO05D000061 4.2e-06 55.8 191 28.8
Solyc01g102700.4 Solanum lycopersicum HOM05D000166 ORTHO05D000812 4.2e-06 55.8 129 33.3
Sopen01g045110 Solanum pennellii HOM05D000166 ORTHO05D000812 4.2e-06 55.8 129 33.3
TAR376G0907 Trochodendron aralioides HOM05D000054 ORTHO05D000171 4.2e-06 55.8 124 29.0
BcaB03g13860 Brassica carinata HOM05D000054 ORTHO05D000171 5.5e-06 55.5 119 33.6
CANSAT01G2802 Cannabis sativa HOM05D000260 ORTHO05D009354 5.5e-06 55.5 120 35.0
CBR_g6417 Chara braunii HOM05D000427 ORTHO05D000386 5.5e-06 55.5 107 34.6
ECA236G0373 Erigeron canadensis HOM05D000166 ORTHO05D000812 5.5e-06 55.5 158 33.5
MD01G1208500 Malus domestica HOM05D000427 ORTHO05D000386 5.5e-06 55.5 112 31.2
Nitab4.5_0000102g0180 Nicotiana tabacum HOM05D000031 ORTHO05D001033 5.5e-06 55.5 141 34.0
Oeu023706.1 Olea europaea HOM05D000022 ORTHO05D000744 5.5e-06 55.5 122 31.1
Sc03g0010940 Simmondsia chinensis HOM05D000031 ORTHO05D001033 5.5e-06 55.5 118 32.2
Sc04g0009330 Simmondsia chinensis HOM05D000022 ORTHO05D000744 5.5e-06 55.5 100 35.0
THA.LOC104809194 Tarenaya hassleriana HOM05D000031 ORTHO05D000030 5.5e-06 55.5 120 36.7
AT1G29730 Arabidopsis thaliana HOM05D000054 ORTHO05D000171 7.2e-06 55.1 119 32.8
EL10Ac2g02440 Beta vulgaris HOM05D000031 ORTHO05D001033 7.2e-06 55.1 122 35.2
BcaC06g35462 Brassica carinata HOM05D000054 ORTHO05D000171 7.2e-06 55.1 119 33.6
BraA07t28817Z Brassica rapa HOM05D000054 ORTHO05D000171 7.2e-06 55.1 119 33.6
CANSAT35G1004 Cannabis sativa HOM05D000031 ORTHO05D000030 7.2e-06 55.1 123 34.1
CiPaw.08G148500 Carya illinoinensis HOM05D000031 ORTHO05D001033 7.2e-06 55.1 117 37.6
Ca_05099_v3 Cicer arietinum L. HOM05D000085 ORTHO05D000274 7.2e-06 55.1 56 44.6
COL.COLO4_22842 Corchorus olitorius HOM05D000054 ORTHO05D000171 7.2e-06 55.1 194 26.8
DCAR_016122 Daucus carota HOM05D000046 ORTHO05D000457 7.2e-06 55.1 226 26.5
Dinv09509 Davidia involucrata HOM05D000031 ORTHO05D001033 7.2e-06 55.1 131 31.3
Duzib116G0493 Durio zibethinus HOM05D000031 ORTHO05D000030 7.2e-06 55.1 118 35.6
FAN15G1649 Fragaria x ananassa HOM05D000031 ORTHO05D001033 7.2e-06 55.1 119 35.3
Lsat_1_v5_gn_9_81581 Lactuca sativa HOM05D000166 ORTHO05D000812 7.2e-06 55.1 158 33.5
Manes.01G192500 Manihot esculenta HOM05D000260 ORTHO05D009354 7.2e-06 55.1 120 35.0
Peaxi162Scf00112g01913 Petunia axillaris HOM05D000054 ORTHO05D000171 7.2e-06 55.1 117 33.3
THA.LOC104800299 Tarenaya hassleriana HOM05D000168 ORTHO05D001942 7.2e-06 55.1 144 31.2
Actinidia08145 Actinidia chinensis HOM05D000022 ORTHO05D000744 9.4e-06 54.7 151 29.8
arahy.Tifrunner.gnm1.ann1.A8RGCZ Arachis hypogaea HOM05D000031 ORTHO05D000030 9.4e-06 54.7 118 35.6
A09p16370 Brassica napus HOM05D000166 ORTHO05D000812 9.4e-06 54.7 129 33.3
BolC9t54893H Brassica oleracea HOM05D000166 ORTHO05D000812 9.4e-06 54.7 129 33.3
BraA09t37277Z Brassica rapa HOM05D000166 ORTHO05D000812 9.4e-06 54.7 129 33.3
Carub.0001s2798 Capsella rubella HOM05D000054 ORTHO05D000171 9.4e-06 54.7 120 34.2
AUR62005424 Chenopodium quinoa HOM05D000022 ORTHO05D000744 9.4e-06 54.7 100 34.0
Cc10_g13850 Coffea canephora HOM05D000031 ORTHO05D001033 9.4e-06 54.7 130 32.3
ECA246G3766 Erigeron canadensis HOM05D000260 ORTHO05D000318 9.4e-06 54.7 120 31.7
Lalb_Chr22g0352771 Lupinus albus HOM05D000085 ORTHO05D000274 9.4e-06 54.7 55 43.6
Mapoly0072s0039 Marchantia polymorpha HOM05D000029 ORTHO05D000010 9.4e-06 54.7 114 34.2
Oeu059871.1 Olea europaea HOM05D000031 ORTHO05D001033 9.4e-06 54.7 119 34.5
Peaxi162Scf00152g00648 Petunia axillaris HOM05D000031 ORTHO05D001033 9.4e-06 54.7 139 34.5
Rhsim12G0113100 Rhododendron simsii HOM05D000022 ORTHO05D000744 9.4e-06 54.7 41 63.4
Sabra01G0177600 Salix brachista HOM05D000166 ORTHO05D000812 9.4e-06 54.7 121 33.9
Thecc.06G161600 Theobroma cacao HOM05D000054 ORTHO05D000171 9.4e-06 54.7 121 33.9
TAR627G1041 Trochodendron aralioides HOM05D000054 ORTHO05D000171 9.4e-06 54.7 178 27.5
Zm00001eb278210 Zea mays HOM05D000085 ORTHO05D000274 9.4e-06 54.7 120 31.7


User provided reference genes

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