Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p004709 Quercus lobata HOM05D005871 ORTHO05D003654 1.1e-93 347.1 239 100.0
Haze_09808 Corylus avellana HOM05D005871 ORTHO05D003654 1.2e-55 220.7 255 57.6
Cfa020208 Carpinus fangiana HOM05D005871 ORTHO05D003654 5.1e-54 215.3 255 60.0
CiPaw.12G137100 Carya illinoinensis HOM05D005871 ORTHO05D003654 3.3e-45 186.0 253 55.7
CiPaw.11G202600 Carya illinoinensis HOM05D005871 ORTHO05D003654 2.6e-34 149.8 254 46.9
Prupe.4G241600 Prunus persica HOM05D005871 ORTHO05D003654 7.9e-31 138.3 264 45.8
Thecc.07G015800 Theobroma cacao HOM05D005871 ORTHO05D003654 1.0e-30 137.9 264 40.9
COL.COLO4_09813 Corchorus olitorius HOM05D005871 ORTHO05D003654 1.3e-30 137.5 258 47.3
MD03G1184900 Malus domestica HOM05D005871 ORTHO05D003654 1.3e-28 131.0 239 47.7
TAR626G0615 Trochodendron aralioides HOM05D005871 ORTHO05D003654 2.1e-28 130.2 242 41.7
Duzib170G1062 Durio zibethinus HOM05D005871 ORTHO05D003654 4.0e-27 125.9 240 44.2
Manes.03G140301 Manihot esculenta HOM05D005871 ORTHO05D003654 9.0e-27 124.8 266 50.8
Lj6g0021132 Lotus japonicus HOM05D005871 ORTHO05D003654 1.5e-26 124.0 252 40.1
Glyma.18G078200 Glycine max HOM05D005871 ORTHO05D003654 2.9e-25 119.8 265 38.5
Manes.03G140300 Manihot esculenta HOM05D005871 ORTHO05D003654 3.8e-25 119.4 267 41.9
Manes.15G061300 Manihot esculenta HOM05D005871 ORTHO05D003654 2.4e-24 116.7 204 45.6
TPR.G35473 Trifolium pratense HOM05D005871 ORTHO05D003654 9.3e-24 114.8 245 41.2
Gorai.009G449600 Gossypium raimondii HOM05D005871 ORTHO05D003654 1.2e-23 114.4 248 47.2
Glyma.08G328600 Glycine max HOM05D005871 ORTHO05D003654 4.6e-23 112.5 265 37.4
VMungo0647G1579 Vigna mungo HOM05D005871 ORTHO05D003654 1.0e-22 111.3 242 37.2
Potri.001G366500 Populus trichocarpa HOM05D005871 ORTHO05D003654 1.8e-22 110.5 265 34.3
Sabra16G0239800 Salix brachista HOM05D005871 ORTHO05D003654 1.8e-22 110.5 263 38.8
Gohir.A04G006400 Gossypium hirsutum HOM05D005871 ORTHO05D003654 3.0e-22 109.8 258 43.4
Phvul.006G056300 Phaseolus vulgaris HOM05D005871 ORTHO05D003654 3.9e-22 109.4 253 36.4
Gohir.D05G383100 Gossypium hirsutum HOM05D005871 ORTHO05D003654 5.1e-22 109.0 248 49.2
Gorai.004G033400 Gossypium raimondii HOM05D005871 ORTHO05D003654 6.7e-22 108.6 248 38.3
Gohir.D08G035400 Gossypium hirsutum HOM05D005871 ORTHO05D003654 1.9e-21 107.1 242 36.8
Gorai.009G449400 Gossypium raimondii HOM05D005871 ORTHO05D003654 2.5e-21 106.7 248 46.0
Glyma.02G299500 Glycine max HOM05D005871 ORTHO05D003654 3.3e-21 106.3 240 45.4
VMungo0540G2170 Vigna mungo HOM05D005871 ORTHO05D003654 5.6e-21 105.5 253 47.8
Gohir.D05G383000 Gossypium hirsutum HOM05D005871 ORTHO05D003654 1.3e-20 104.4 248 44.4
Glyma.14G014200 Glycine max HOM05D005871 ORTHO05D003654 3.7e-20 102.8 259 38.2
Phvul.008G278200 Phaseolus vulgaris HOM05D005871 ORTHO05D003654 1.1e-19 101.3 238 37.8
Gohir.A08G024900 Gossypium hirsutum HOM05D005871 ORTHO05D003654 1.4e-19 100.9 257 36.6
Eucgr.F02056 Eucalyptus grandis HOM05D005871 ORTHO05D003654 1.8e-19 100.5 258 34.9
Atru.chr2.3672 Acer truncatum HOM05D005871 ORTHO05D003654 4.0e-19 99.4 284 49.6
Gohir.D05G382900 Gossypium hirsutum HOM05D005871 ORTHO05D003654 1.2e-18 97.8 248 46.8
Lalb_Chr04g0247911 Lupinus albus HOM05D005871 ORTHO05D003654 4.5e-18 95.9 263 34.2
Lj6g0021470 Lotus japonicus HOM05D005871 ORTHO05D003654 1.0e-17 94.7 242 35.1
TWI38G0819 Tripterygium wilfordii HOM05D005871 ORTHO05D003654 5.5e-16 89.0 226 36.3
CANSAT11G0434 Cannabis sativa HOM05D005871 ORTHO05D003654 9.3e-16 88.2 256 45.7
Medtr5g095630 Medicago truncatula HOM05D005871 ORTHO05D003654 1.2e-15 87.8 274 36.5
Sc16g0008000 Simmondsia chinensis HOM05D005871 ORTHO05D003654 1.2e-15 87.8 247 45.7
Cpa.g.sc12.163 Carica papaya HOM05D005871 ORTHO05D003654 1.6e-15 87.4 261 39.1
PGR083G2866 Punica granatum HOM05D005871 ORTHO05D003654 2.1e-15 87.0 268 36.2
TPR.G8596 Trifolium pratense HOM05D005871 ORTHO05D003654 2.1e-15 87.0 252 34.9
TWI39G0465 Tripterygium wilfordii HOM05D005871 ORTHO05D003654 2.7e-15 86.7 232 37.1
Ah.04g166520 Amaranthus hybridus HOM05D005871 ORTHO05D003654 4.6e-15 85.9 228 48.2
Sed0014857 Sechium edule HOM05D005871 ORTHO05D003654 1.8e-14 84.0 249 36.5
Nn1g07488 Nelumbo nucifera HOM05D005871 ORTHO05D003654 2.3e-14 83.6 246 33.7
FAN02G3820 Fragaria x ananassa HOM05D005871 ORTHO05D003654 3.0e-14 83.2 227 37.4
Lalb_Chr18g0057151 Lupinus albus HOM05D005871 ORTHO05D003654 3.9e-14 82.8 244 34.0
TAR629G1912 Trochodendron aralioides HOM05D005871 ORTHO05D003654 5.1e-14 82.4 225 47.1
Medtr5g095540 Medicago truncatula HOM05D005871 ORTHO05D003654 1.1e-13 81.3 278 36.7
CiPaw.03G281200 Carya illinoinensis HOM05D005871 ORTHO05D003654 1.9e-13 80.5 246 38.6
Nn1g03208 Nelumbo nucifera HOM05D005871 ORTHO05D003654 1.9e-13 80.5 229 34.5
Psat2g007960 Pisum sativum HOM05D005871 ORTHO05D003654 1.9e-13 80.5 239 46.4
VMungo0540G0718 Vigna mungo HOM05D005871 ORTHO05D003654 1.9e-13 80.5 240 34.6
Gorai.010G189400 Gossypium raimondii HOM05D005871 ORTHO05D003654 2.5e-13 80.1 240 32.5
Psat0s4683g0040 Pisum sativum HOM05D005871 ORTHO05D003654 4.3e-13 79.3 250 29.6
Psat2g008040 Pisum sativum HOM05D005871 ORTHO05D003654 7.4e-13 78.6 263 39.5
THA.LOC104822734 Tarenaya hassleriana HOM05D010616 ORTHO05D003654 7.4e-13 78.6 185 42.2
Medtr3g058890 Medicago truncatula HOM05D005871 ORTHO05D003654 9.7e-13 78.2 143 39.2
THA.LOC104810289 Tarenaya hassleriana HOM05D010616 ORTHO05D003654 1.3e-12 77.8 224 33.9
DCAR_022606 Daucus carota HOM05D005871 ORTHO05D003654 1.6e-12 77.4 266 31.2
Phvul.006G140600 Phaseolus vulgaris HOM05D005871 ORTHO05D003654 2.2e-12 77.0 262 30.5
FvH4_6g40700 Fragaria vesca HOM05D008806 ORTHO05D003654 3.7e-12 76.3 227 41.9
Hma1.2p1_0657F.1_g196840 Hydrangea macrophylla HOM05D005871 ORTHO05D003654 3.7e-12 76.3 252 34.5
Thecc.06G238200 Theobroma cacao HOM05D005871 ORTHO05D003654 4.8e-12 75.9 242 38.8
MELO3C024925.2 Cucumis melo HOM05D005871 ORTHO05D003654 6.3e-12 75.5 225 40.4
QL08p028006 Quercus lobata HOM05D008806 ORTHO05D003654 1.1e-11 74.7 219 41.6
TPR.G8607 Trifolium pratense HOM05D005871 ORTHO05D003654 1.1e-11 74.7 272 34.9
QL05p068166 Quercus lobata HOM05D005871 ORTHO05D003654 1.4e-11 74.3 243 32.5
QL06p003419 Quercus lobata HOM05D008806 ORTHO05D003654 2.4e-11 73.6 224 33.0
Gohir.D05G382950 Gossypium hirsutum HOM05D005871 ORTHO05D003654 3.1e-11 73.2 170 38.8
Gohir.D06G162300 Gossypium hirsutum HOM05D005871 ORTHO05D003654 3.1e-11 73.2 189 33.9
TAR629G2179 Trochodendron aralioides HOM05D005871 ORTHO05D003654 4.1e-11 72.8 150 41.3
Eucgr.F02055 Eucalyptus grandis HOM05D005871 ORTHO05D003654 5.3e-11 72.4 239 33.9
TWI38G1492 Tripterygium wilfordii HOM05D005871 ORTHO05D003654 6.9e-11 72.0 266 30.8
CAN.G337.14 Capsicum annuum HOM05D033747 ORTHO05D033984 9.0e-11 71.6 246 37.8
Haze_07001 Corylus avellana HOM05D005871 ORTHO05D003654 9.0e-11 71.6 248 45.6
MSTRG.6992 Avicennia marina HOM05D018445 ORTHO05D003654 1.2e-10 71.2 225 40.4
CsaV3_7G015020 Cucumis sativus L. HOM05D005871 ORTHO05D003654 1.2e-10 71.2 241 32.0
Gorai.009G449500 Gossypium raimondii HOM05D005871 ORTHO05D003654 1.5e-10 70.9 234 32.5
Thecc.01G195400 Theobroma cacao HOM05D008806 ORTHO05D003654 1.5e-10 70.9 226 31.9
Cfa000051 Carpinus fangiana HOM05D005871 ORTHO05D003654 2.6e-10 70.1 248 44.4
Cfa014230 Carpinus fangiana HOM05D008806 ORTHO05D003654 4.5e-10 69.3 230 32.2
Glyma.09G012800 Glycine max HOM05D005871 ORTHO05D003654 4.5e-10 69.3 240 40.4
Prupe.3G198500 Prunus persica HOM05D008806 ORTHO05D003654 4.5e-10 69.3 240 47.1
Sp3g11300 Schrenkiella parvula HOM05D010616 ORTHO05D003654 4.5e-10 69.3 222 30.6
Dinv26612 Davidia involucrata HOM05D008806 ORTHO05D003654 5.9e-10 68.9 180 43.3
Actinidia02292 Actinidia chinensis HOM05D005871 ORTHO05D003654 7.7e-10 68.6 254 31.1
BcaB06g25485 Brassica carinata HOM05D010616 ORTHO05D003654 1.0e-09 68.2 221 38.0
BraA05t22441Z Brassica rapa HOM05D010616 ORTHO05D003654 1.3e-09 67.8 220 34.1
SalBow8G3140 Salvia bowleyana HOM05D005871 ORTHO05D003654 1.3e-09 67.8 218 36.7
Gohir.A06G155900 Gossypium hirsutum HOM05D005871 ORTHO05D003654 1.7e-09 67.4 249 41.4
BcaC05g29208 Brassica carinata HOM05D010616 ORTHO05D003654 2.9e-09 66.6 224 29.9
C05p54810 Brassica napus HOM05D010616 ORTHO05D003654 2.9e-09 66.6 224 29.9
BolC5t34153H Brassica oleracea HOM05D010616 ORTHO05D003654 2.9e-09 66.6 224 29.9
Duzib138G0120 Durio zibethinus HOM05D008806 ORTHO05D003654 5.0e-09 65.9 250 30.8
Ah.09g234010 Amaranthus hybridus HOM05D005871 ORTHO05D003654 6.5e-09 65.5 223 28.7
CiPaw.09G107300 Carya illinoinensis HOM05D005871 ORTHO05D003654 1.4e-08 64.3 234 33.8
Ciclev10016749m.g Citrus clementina HOM05D008806 ORTHO05D003654 1.9e-08 63.9 224 30.4
Migut.M01661 Erythranthe guttata HOM05D018445 ORTHO05D021546 1.9e-08 63.9 257 32.7
arahy.Tifrunner.gnm1.ann1.C2C6BR Arachis hypogaea HOM05D005871 ORTHO05D003654 2.5e-08 63.5 268 44.0
BcaNung05271 Brassica carinata HOM05D010616 ORTHO05D003654 2.5e-08 63.5 221 36.7
A05p36410 Brassica napus HOM05D010616 ORTHO05D003654 3.2e-08 63.2 223 32.7
Rhsim06G0176100 Rhododendron simsii HOM05D008806 ORTHO05D003654 3.2e-08 63.2 234 39.7
Solyc07g045530.2 Solanum lycopersicum HOM05D016037 ORTHO05D003654 3.2e-08 63.2 115 40.9
PGSC0003DMG400017373 Solanum tuberosum HOM05D016037 ORTHO05D003654 3.2e-08 63.2 82 48.8
TPR.G10004 Trifolium pratense HOM05D005871 ORTHO05D003654 3.2e-08 63.2 232 27.2
Carub.0003s1247 Capsella rubella HOM05D010616 ORTHO05D003654 4.2e-08 62.8 231 39.0
Duzib133G1309 Durio zibethinus HOM05D008806 ORTHO05D003654 4.2e-08 62.8 228 32.9
Gorai.001G221500 Gossypium raimondii HOM05D008806 ORTHO05D003654 4.2e-08 62.8 231 30.3
SGA_v2.0_scaffold73G24498 Striga asiatica HOM05D016037 ORTHO05D003654 5.5e-08 62.4 230 35.7
Cc09_g00530 Coffea canephora HOM05D005871 ORTHO05D003654 7.2e-08 62.0 259 35.1
Migut.M00045 Erythranthe guttata HOM05D005871 ORTHO05D003654 7.2e-08 62.0 74 45.9
FAN09G0572 Fragaria x ananassa HOM05D008806 ORTHO05D003654 7.2e-08 62.0 182 31.3
Gohir.A07G191600 Gossypium hirsutum HOM05D008806 ORTHO05D003654 7.2e-08 62.0 236 29.7
MD00G1057200 Malus domestica HOM05D005871 ORTHO05D003654 7.2e-08 62.0 233 27.9
SalBow1G1270 Salvia bowleyana HOM05D005871 ORTHO05D003654 7.2e-08 62.0 249 35.3
Ah.06g181330 Amaranthus hybridus HOM05D005871 ORTHO05D003654 1.2e-07 61.2 226 40.3
FAN14G2730 Fragaria x ananassa HOM05D008806 ORTHO05D003654 1.2e-07 61.2 182 42.9
SalBow7G0966 Salvia bowleyana HOM05D005871 ORTHO05D003654 1.2e-07 61.2 129 34.1
Sc05g0009780 Simmondsia chinensis HOM05D005871 ORTHO05D003654 1.2e-07 61.2 246 44.3
AT3G13130 Arabidopsis thaliana HOM05D010616 ORTHO05D003654 1.6e-07 60.8 242 27.3
CARHR087720 Cardamine hirsuta HOM05D010616 ORTHO05D003654 1.6e-07 60.8 232 31.5
Thhalv10021559m.g Eutrema salsugineum HOM05D010616 ORTHO05D003654 1.6e-07 60.8 266 26.7
FAN05G0544 Fragaria x ananassa HOM05D008806 ORTHO05D003654 2.7e-07 60.1 187 32.1
Haze_12634 Corylus avellana HOM05D008806 ORTHO05D003654 3.6e-07 59.7 231 35.1
Atru.chr6.3383_Atru.chr6.3384 Acer truncatum HOM05D008806 ORTHO05D003654 6.1e-07 58.9 239 30.5
AUR62017078 Chenopodium quinoa HOM05D005871 ORTHO05D003654 7.9e-07 58.5 183 44.8
COL.COLO4_31921 Corchorus olitorius HOM05D005871 ORTHO05D003654 1.0e-06 58.2 226 44.2
Sed0022932 Sechium edule HOM05D008806 ORTHO05D003654 1.0e-06 58.2 218 30.3
MSTRG.13016 Avicennia marina HOM05D018445 ORTHO05D021546 1.4e-06 57.8 244 31.1
Sabra14G0126900 Salix brachista HOM05D008806 ORTHO05D003654 1.4e-06 57.8 237 28.7
Cfa017914 Carpinus fangiana HOM05D000074 ORTHO05D000220 1.8e-06 57.4 124 34.7
Manes.12G064700 Manihot esculenta HOM05D008806 ORTHO05D003654 1.8e-06 57.4 234 31.2
Nitab4.5_0001701g0160 Nicotiana tabacum HOM05D016037 ORTHO05D003654 2.3e-06 57.0 110 40.0
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 2.3e-06 57.0 31 90.3
Gohir.D07G197900 Gossypium hirsutum HOM05D008806 ORTHO05D003654 3.0e-06 56.6 236 28.0
Medtr2g026565 Medicago truncatula HOM05D005871 ORTHO05D003654 3.0e-06 56.6 242 28.1
arahy.Tifrunner.gnm1.ann1.56XTAU Arachis hypogaea HOM05D005871 ORTHO05D003654 5.1e-06 55.8 32 84.4
Potri.014G166900 Populus trichocarpa HOM05D008806 ORTHO05D003654 6.7e-06 55.5 219 40.6


User provided reference genes

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