Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p004345 Quercus lobata HOM05D005849 ORTHO05D004704 3.0e-126 455.3 248 100.0
QL11p054311 Quercus lobata HOM05D005849 ORTHO05D004704 9.1e-115 417.2 231 100.0
CiPaw.11G203200 Carya illinoinensis HOM05D005849 ORTHO05D004704 4.4e-69 265.4 229 69.9
CiPaw.12G137700 Carya illinoinensis HOM05D005849 ORTHO05D004704 1.9e-67 260.0 237 67.1
Cfa020199 Carpinus fangiana HOM05D005849 ORTHO05D004704 4.0e-54 215.7 217 62.2
Haze_09816 Corylus avellana HOM05D005849 ORTHO05D004704 5.1e-49 198.7 174 69.0
Potri.001G367100 Populus trichocarpa HOM05D005849 ORTHO05D004704 2.1e-42 176.8 230 51.7
Duzib213G0789 Durio zibethinus HOM05D005849 ORTHO05D004704 3.4e-37 159.5 226 49.6
Manes.15G060700 Manihot esculenta HOM05D005849 ORTHO05D004704 6.4e-36 155.2 230 47.8
Manes.03G140566 Manihot esculenta HOM05D005849 ORTHO05D004704 2.5e-35 153.3 229 48.5
Sabra16G0240400 Salix brachista HOM05D005849 ORTHO05D004704 7.1e-35 151.8 231 47.2
Manes.03G140700 Manihot esculenta HOM05D005849 ORTHO05D004704 2.1e-34 150.2 229 48.0
Ciclev10009298m.g Citrus clementina HOM05D005849 ORTHO05D004704 2.6e-29 133.3 241 43.2
Phvul.006G056700 Phaseolus vulgaris HOM05D005849 ORTHO05D004704 4.9e-28 129.0 254 39.8
Gohir.A01G091100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 4.2e-27 125.9 223 43.5
VMungo0540G1302 Vigna mungo HOM05D005849 ORTHO05D004704 1.6e-26 124.0 255 40.4
TWI38G0138 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 2.1e-26 123.6 225 44.0
Glyma.08G329000 Glycine max HOM05D005849 ORTHO05D004704 2.7e-26 123.2 242 39.3
Thecc.07G014700 Theobroma cacao HOM05D005849 ORTHO05D004704 1.3e-25 120.9 235 42.6
Dinv10326 Davidia involucrata HOM05D005849 ORTHO05D004704 1.8e-25 120.6 231 41.1
Nn1g03187 Nelumbo nucifera HOM05D005849 ORTHO05D004704 3.9e-25 119.4 232 40.9
Gorai.002G099600 Gossypium raimondii HOM05D005849 ORTHO05D004704 1.5e-24 117.5 224 42.9
Prupe.4G242400 Prunus persica HOM05D005849 ORTHO05D004704 1.9e-24 117.1 144 54.2
Glyma.18G077800 Glycine max HOM05D014115 ORTHO05D004704 3.3e-24 116.3 260 37.7
Lj6g0007370 Lotus japonicus HOM05D005849 ORTHO05D004704 9.7e-24 114.8 239 38.9
Dinv26604 Davidia involucrata HOM05D005849 ORTHO05D004704 9.0e-22 108.2 230 40.0
TAR629G2911 Trochodendron aralioides HOM05D005849 ORTHO05D004704 7.7e-21 105.1 224 42.4
CANSAT11G2057 Cannabis sativa HOM05D005849 ORTHO05D004704 1.7e-20 104.0 242 39.7
Cpa.g.sc12.153 Carica papaya HOM05D005849 ORTHO05D004704 2.9e-20 103.2 244 42.6
Duzib133G0645 Durio zibethinus HOM05D005849 ORTHO05D004704 2.9e-20 103.2 234 38.5
COL.COLO4_19617 Corchorus olitorius HOM05D005849 ORTHO05D004704 1.9e-19 100.5 248 39.5
Thecc.01G196200 Theobroma cacao HOM05D005849 ORTHO05D004704 2.5e-19 100.1 234 37.6
COL.COLO4_09821 Corchorus olitorius HOM05D005849 ORTHO05D004704 4.2e-19 99.4 210 42.4
Duzib138G1177 Durio zibethinus HOM05D005849 ORTHO05D004704 7.2e-19 98.6 223 39.9
Prupe.3G197400 Prunus persica HOM05D005849 ORTHO05D004704 7.2e-19 98.6 228 36.4
TAR629G2787 Trochodendron aralioides HOM05D005849 ORTHO05D004704 2.7e-18 96.7 133 52.6
Gohir.D01G076400 Gossypium hirsutum HOM05D005849 ORTHO05D004704 3.6e-18 96.3 188 42.0
Manes.13G061900 Manihot esculenta HOM05D005849 ORTHO05D004704 3.6e-18 96.3 233 37.3
Lalb_Chr15g0082031 Lupinus albus HOM05D005849 ORTHO05D004704 6.1e-18 95.5 115 54.8
QL04p068477 Quercus lobata HOM05D005849 ORTHO05D004704 3.9e-17 92.8 235 40.4
Glyma.02G300100 Glycine max HOM05D014115 ORTHO05D004704 8.8e-17 91.7 235 36.2
Sabra14G0127500 Salix brachista HOM05D005849 ORTHO05D004704 8.8e-17 91.7 221 36.7
Glyma.14G013800 Glycine max HOM05D014115 ORTHO05D004704 1.5e-16 90.9 253 36.8
Potri.014G167700 Populus trichocarpa HOM05D005849 ORTHO05D004704 2.5e-16 90.1 236 36.0
PSO541G2883 Papaver somniferum HOM05D005849 ORTHO05D004704 3.3e-16 89.7 153 41.8
Aqoxy4G02338 Aquilegia oxysepala HOM05D005849 ORTHO05D004704 4.3e-16 89.4 226 36.3
PSO675G3647 Papaver somniferum HOM05D005849 ORTHO05D004704 5.7e-16 89.0 153 41.8
Nn1g07503 Nelumbo nucifera HOM05D005849 ORTHO05D004704 1.3e-15 87.8 126 47.6
Gorai.001G222200 Gossypium raimondii HOM05D005849 ORTHO05D004704 2.2e-15 87.0 232 37.5
MBI16_g22138_MAGBIO Magnolia biondii HOM05D005849 ORTHO05D004704 4.8e-15 85.9 228 36.0
Gohir.D07G198400 Gossypium hirsutum HOM05D005849 ORTHO05D004704 6.3e-15 85.5 232 37.5
MD09G1126800 Malus domestica HOM05D005849 ORTHO05D004704 1.4e-14 84.3 236 35.6
arahy.Tifrunner.gnm1.ann1.715EVP Arachis hypogaea HOM05D005849 ORTHO05D004704 2.4e-14 83.6 215 36.3
Gohir.A07G192100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 2.4e-14 83.6 231 37.2
TWI36G1699 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 2.4e-14 83.6 237 35.9
TPR.G8608 Trifolium pratense HOM05D014115 ORTHO05D015996 3.1e-14 83.2 131 43.5
arahy.Tifrunner.gnm1.ann1.UTL0P7 Arachis hypogaea HOM05D005849 ORTHO05D004704 4.1e-14 82.8 163 41.7
Phvul.008G278800 Phaseolus vulgaris HOM05D014115 ORTHO05D004704 2.0e-13 80.5 222 35.6
Cfa014225 Carpinus fangiana HOM05D005849 ORTHO05D004704 3.4e-13 79.7 228 36.0
Lj8P136T22 Lonicera japonica HOM05D005849 ORTHO05D004704 7.7e-13 78.6 226 36.3
Lj8P178T38 Lonicera japonica HOM05D005849 ORTHO05D004704 7.7e-13 78.6 99 57.6
Medtr5g095710 Medicago truncatula HOM05D014115 ORTHO05D004704 1.0e-12 78.2 219 34.2
VMungo0647G1046 Vigna mungo HOM05D014115 ORTHO05D004704 1.0e-12 78.2 221 33.5
Haze_12628 Corylus avellana HOM05D005849 ORTHO05D004704 1.7e-12 77.4 230 36.1
Gorai.001G191400 Gossypium raimondii HOM05D005849 ORTHO05D004704 2.2e-12 77.0 223 38.1
MD17G1117100 Malus domestica HOM05D005849 ORTHO05D004704 3.8e-12 76.3 161 41.0
Gohir.D07G171100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 5.0e-12 75.9 224 38.4
Manes.12G064702 Manihot esculenta HOM05D005849 ORTHO05D004704 5.0e-12 75.9 226 35.4
Gohir.A07G169800 Gossypium hirsutum HOM05D005849 ORTHO05D004704 1.1e-11 74.7 212 37.7
Psat5g169040 Pisum sativum HOM05D014115 ORTHO05D004704 1.1e-11 74.7 248 31.0
TPR.G35467 Trifolium pratense HOM05D014115 ORTHO05D004704 1.1e-11 74.7 274 30.3
Rhsim06G0176600 Rhododendron simsii HOM05D005849 ORTHO05D004704 1.4e-11 74.3 219 34.7
CiPaw.03G281900 Carya illinoinensis HOM05D005849 ORTHO05D004704 1.9e-11 73.9 230 34.8
LjContig00081g0015024 Lotus japonicus HOM05D005849 ORTHO05D004704 1.9e-11 73.9 242 33.5
Medtr5g098480 Medicago truncatula HOM05D005849 ORTHO05D004704 2.5e-11 73.6 111 45.9
RcHm_v2.0_Chr2g0155981 Rosa chinensis HOM05D005849 ORTHO05D004704 3.2e-11 73.2 231 33.3
FAN05G2424 Fragaria x ananassa HOM05D005849 ORTHO05D004704 4.2e-11 72.8 234 32.9
FvH4_6g40610 Fragaria vesca HOM05D005849 ORTHO05D004704 7.2e-11 72.0 234 32.5
FAN14G3262 Fragaria x ananassa HOM05D005849 ORTHO05D004704 7.2e-11 72.0 234 32.5
Cpa.g.sc136.30 Carica papaya HOM05D005849 ORTHO05D004704 9.4e-11 71.6 250 33.6
CiPaw.04G197000 Carya illinoinensis HOM05D005849 ORTHO05D004704 1.6e-10 70.9 231 34.6
Dinv21298 Davidia involucrata HOM05D005849 ORTHO05D004704 1.6e-10 70.9 231 35.9
Actinidia18832 Actinidia chinensis HOM05D005849 ORTHO05D004704 2.1e-10 70.5 80 53.8
Actinidia35203 Actinidia chinensis HOM05D005849 ORTHO05D004704 3.6e-10 69.7 225 34.2
FAN02G2959 Fragaria x ananassa HOM05D005849 ORTHO05D004704 6.1e-10 68.9 234 32.5
Nn1g04368 Nelumbo nucifera HOM05D005849 ORTHO05D004704 6.1e-10 68.9 112 42.9
TWI18G0644 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 7.9e-10 68.6 247 34.0
Cc03_g07410 Coffea canephora HOM05D005849 ORTHO05D004704 1.4e-09 67.8 156 37.8
FAN09G2506 Fragaria x ananassa HOM05D005849 ORTHO05D004704 1.4e-09 67.8 236 33.1
Psat5g104280 Pisum sativum HOM05D005849 ORTHO05D004704 1.8e-09 67.4 77 61.0
PGR083G2364 Punica granatum HOM05D005849 ORTHO05D004704 1.8e-09 67.4 153 37.3
Solyc07g045450.1 Solanum lycopersicum HOM05D005849 ORTHO05D004704 2.3e-09 67.0 116 42.2
Sopen07g023990 Solanum pennellii HOM05D005849 ORTHO05D004704 2.3e-09 67.0 116 42.2
Nitab4.5_0000006g0660 Nicotiana tabacum HOM05D005849 ORTHO05D004704 3.9e-09 66.2 233 30.0
Ciclev10018021m.g Citrus clementina HOM05D005849 ORTHO05D004704 5.1e-09 65.9 206 32.0
TPR.G35904 Trifolium pratense HOM05D005849 ORTHO05D004704 6.7e-09 65.5 121 44.6
Medtr3g058930 Medicago truncatula HOM05D014115 ORTHO05D004704 8.8e-09 65.1 309 27.2
Peaxi162Scf00802g00130 Petunia axillaris HOM05D005849 ORTHO05D004704 1.1e-08 64.7 70 54.3
Glyma.13G006500 Glycine max HOM05D005849 ORTHO05D004704 1.5e-08 64.3 232 33.6
DCAR_019680 Daucus carota HOM05D005849 ORTHO05D004704 2.0e-08 63.9 138 42.0
MBI19_g14891_MAGBIO Magnolia biondii HOM05D005849 ORTHO05D004704 2.0e-08 63.9 199 34.2
TPR.G11064 Trifolium pratense HOM05D005849 ORTHO05D004704 2.6e-08 63.5 77 57.1
Medtr3g082780 Medicago truncatula HOM05D005849 ORTHO05D004704 3.3e-08 63.2 77 57.1
DCAR_012893 Daucus carota HOM05D005849 ORTHO05D004704 9.7e-08 61.6 144 38.2
MELO3C025957.2 Cucumis melo HOM05D005849 ORTHO05D004704 1.7e-07 60.8 80 51.2
Oeu049391.1 Olea europaea HOM05D005849 ORTHO05D004704 2.2e-07 60.5 128 34.4
Eucgr.F03692 Eucalyptus grandis HOM05D005849 ORTHO05D004704 2.8e-07 60.1 224 30.4
Ca_22134_v3 Cicer arietinum L. HOM05D014115 ORTHO05D004704 1.1e-06 58.2 161 32.3
CsaV3_6G009640 Cucumis sativus L. HOM05D005849 ORTHO05D004704 1.1e-06 58.2 84 50.0
Actinidia07866 Actinidia chinensis HOM05D005849 ORTHO05D004704 2.4e-06 57.0 219 32.4
Ah.01g002540 Amaranthus hybridus HOM05D005849 ORTHO05D004704 2.4e-06 57.0 232 30.2
Glyma.20G062100 Glycine max HOM05D005849 ORTHO05D004704 2.4e-06 57.0 98 41.8
Oeu064351.1 Olea europaea HOM05D005849 ORTHO05D004704 3.1e-06 56.6 122 41.8
Sed0024428 Sechium edule HOM05D031229 ORTHO05D029008 5.3e-06 55.8 96 45.8
arahy.Tifrunner.gnm1.ann1.8Y07GA Arachis hypogaea HOM05D005849 ORTHO05D004704 7.0e-06 55.5 80 51.2
ClCG09G021280 Citrullus lanatus HOM05D031229 ORTHO05D029008 7.0e-06 55.5 88 45.5


User provided reference genes

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