Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p004337 Quercus lobata HOM05D005924 ORTHO05D007290 9.8e-77 290.0 145 100.0
QL11p054318 Quercus lobata HOM05D005924 ORTHO05D007290 2.9e-76 288.5 145 99.3
Cfa020200 Carpinus fangiana HOM05D005924 ORTHO05D007290 4.3e-64 248.1 145 88.3
Haze_09815 Corylus avellana HOM05D005924 ORTHO05D007290 1.8e-62 242.7 145 87.6
CiPaw.12G137600 Carya illinoinensis HOM05D005924 ORTHO05D007290 2.0e-61 239.2 145 82.8
Ciclev10009817m.g Citrus clementina HOM05D005924 ORTHO05D007290 1.0e-57 226.9 146 78.1
CiPaw.11G203100 Carya illinoinensis HOM05D005924 ORTHO05D007290 3.3e-56 221.9 145 80.7
MD03G1184300 Malus domestica HOM05D005924 ORTHO05D007290 5.6e-56 221.1 143 76.2
Prupe.4G242300 Prunus persica HOM05D005924 ORTHO05D007290 1.4e-54 216.5 146 76.0
MD11G1201100 Malus domestica HOM05D005924 ORTHO05D007290 1.8e-54 216.1 145 76.6
GSVIVG01014668001 Vitis vinifera HOM05D005924 ORTHO05D007290 3.1e-54 215.3 142 79.6
COL.COLO4_09820 Corchorus olitorius HOM05D005924 ORTHO05D007290 5.8e-53 211.1 147 74.1
RcHm_v2.0_Chr5g0053761 Rosa chinensis HOM05D005924 ORTHO05D007290 1.3e-52 209.9 150 70.7
Duzib213G0633 Durio zibethinus HOM05D005924 ORTHO05D007290 2.9e-52 208.8 146 75.3
Dinv10325 Davidia involucrata HOM05D005924 ORTHO05D007290 1.4e-51 206.5 147 77.6
FvH4_3g29370 Fragaria vesca HOM05D005924 ORTHO05D007290 7.1e-51 204.1 147 69.4
FAN11G0697 Fragaria x ananassa HOM05D005924 ORTHO05D007290 7.1e-51 204.1 147 69.4
TWI38G0037 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 9.2e-51 203.8 151 72.2
TWI39G1162 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 2.1e-50 202.6 150 72.0
Dinv40851 Davidia involucrata HOM05D005924 ORTHO05D007290 4.6e-50 201.4 141 78.0
Manes.15G060600 Manihot esculenta HOM05D005924 ORTHO05D007290 4.6e-50 201.4 145 75.2
Thecc.07G014800 Theobroma cacao HOM05D005924 ORTHO05D007290 6.0e-50 201.1 146 71.9
TAR629G1982 Trochodendron aralioides HOM05D001060 ORTHO05D000905 7.8e-50 200.7 141 74.5
FAN21G3132 Fragaria x ananassa HOM05D005924 ORTHO05D007290 2.3e-49 199.1 147 68.0
Actinidia30411 Actinidia chinensis HOM05D005924 ORTHO05D007290 3.9e-49 198.4 146 70.5
FAN25G0770 Fragaria x ananassa HOM05D005924 ORTHO05D007290 3.9e-49 198.4 145 68.3
CSS0023895 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 6.6e-49 197.6 145 72.4
CSS0025987 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 3.3e-48 195.3 149 73.8
CSS0049690 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 3.3e-48 195.3 149 73.8
Gohir.D05G383300 Gossypium hirsutum HOM05D005924 ORTHO05D007290 9.6e-48 193.7 146 71.2
Gohir.A04G006200 Gossypium hirsutum HOM05D005924 ORTHO05D007290 2.1e-47 192.6 146 71.2
Hma1.2p1_0036F.1_g022440 Hydrangea macrophylla HOM05D005924 ORTHO05D007290 2.1e-47 192.6 145 72.4
Nn1g03196 Nelumbo nucifera HOM05D005924 ORTHO05D007290 2.8e-47 192.2 145 69.0
QL08p004311 Quercus lobata HOM05D005924 ORTHO05D007290 2.8e-47 192.2 125 80.8
Sabra16G0240500 Salix brachista HOM05D005924 ORTHO05D007290 2.8e-47 192.2 144 71.5
Ca_06392_v3 Cicer arietinum L. HOM05D005924 ORTHO05D007290 4.7e-47 191.4 143 70.6
Eucgr.F02053 Eucalyptus grandis HOM05D005924 ORTHO05D007290 4.7e-47 191.4 147 68.7
Lj8A178T78 Lonicera japonica HOM05D005924 ORTHO05D007290 8.1e-47 190.7 129 76.7
arahy.Tifrunner.gnm1.ann1.7P25LN Arachis hypogaea HOM05D005924 ORTHO05D007290 1.1e-46 190.3 142 71.1
arahy.Tifrunner.gnm1.ann1.RJW0MD Arachis hypogaea HOM05D005924 ORTHO05D007290 1.1e-46 190.3 142 71.1
CANSAT11G0122 Cannabis sativa HOM05D005924 ORTHO05D007290 3.1e-46 188.7 149 72.5
Cpa.g.sc12.154 Carica papaya HOM05D005924 ORTHO05D007290 6.9e-46 187.6 127 74.0
Potri.001G367200 Populus trichocarpa HOM05D005924 ORTHO05D007290 1.2e-45 186.8 144 69.4
Rhsim04G0012900 Rhododendron simsii HOM05D005924 ORTHO05D007290 2.0e-45 186.0 143 72.0
ClCG09G021250 Citrullus lanatus HOM05D005924 ORTHO05D007290 9.9e-45 183.7 141 72.3
Lj6g0020710 Lotus japonicus HOM05D005924 ORTHO05D007290 1.3e-44 183.3 140 71.4
Sed0014433 Sechium edule HOM05D005924 ORTHO05D007290 1.7e-44 183.0 141 70.2
TPR.G8617 Trifolium pratense HOM05D005924 ORTHO05D007290 4.9e-44 181.4 143 66.4
vmacro09651 Vaccinium macrocarpon HOM05D005924 ORTHO05D007290 8.4e-44 180.6 145 69.0
Actinidia26779 Actinidia chinensis HOM05D005924 ORTHO05D007290 1.9e-43 179.5 141 70.2
CsaV3_7G015090 Cucumis sativus L. HOM05D005924 ORTHO05D007290 2.4e-43 179.1 141 69.5
PGR083G1797 Punica granatum HOM05D005924 ORTHO05D007290 2.4e-43 179.1 148 69.6
Aqoxy1G04252 Aquilegia oxysepala HOM05D005924 ORTHO05D007290 2.1e-42 176.0 143 65.7
SGA_v2.0_scaffold8G04406 Striga asiatica HOM05D005924 ORTHO05D007290 2.7e-42 175.6 144 66.0
Oeu057095.1 Olea europaea HOM05D005924 ORTHO05D007290 3.5e-42 175.3 141 68.1
Lalb_Chr04g0247881 Lupinus albus HOM05D005924 ORTHO05D007290 4.6e-42 174.9 143 67.8
VMungo0647G1823 Vigna mungo HOM05D005924 ORTHO05D007290 6.0e-42 174.5 142 69.0
MELO3C024930.2 Cucumis melo HOM05D005924 ORTHO05D007290 1.0e-41 173.7 141 68.1
ECA246G3128 Erigeron canadensis HOM05D005924 ORTHO05D007290 1.7e-41 172.9 146 66.4
Phvul.008G278700 Phaseolus vulgaris HOM05D005924 ORTHO05D007290 1.7e-41 172.9 142 67.6
AT5G55640 Arabidopsis thaliana HOM05D005924 ORTHO05D007290 3.0e-41 172.2 145 64.8
Gorai.009G449900 Gossypium raimondii HOM05D005924 ORTHO05D007290 3.0e-41 172.2 179 57.0
Sed0006731 Sechium edule HOM05D005924 ORTHO05D007290 3.0e-41 172.2 141 67.4
Glyma.02G300000 Glycine max HOM05D005924 ORTHO05D007290 3.9e-41 171.8 129 69.0
Oeu049375.1 Olea europaea HOM05D005924 ORTHO05D007290 5.1e-41 171.4 141 66.7
THA.LOC104811656 Tarenaya hassleriana HOM05D005924 ORTHO05D007290 5.1e-41 171.4 146 67.8
Migut.H01759 Erythranthe guttata HOM05D005924 ORTHO05D007290 6.6e-41 171.0 142 64.1
Thhalv10014966m.g Eutrema salsugineum HOM05D005924 ORTHO05D007290 6.6e-41 171.0 142 66.2
MBI19_g12833_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 1.9e-40 169.5 146 65.1
Medtr5g095700 Medicago truncatula HOM05D005924 ORTHO05D007290 2.5e-40 169.1 144 63.2
Hund23125 Selenicereus undatus HOM05D005924 ORTHO05D007290 2.5e-40 169.1 145 64.8
AUR62036411 Chenopodium quinoa HOM05D005924 ORTHO05D007290 4.3e-40 168.3 146 64.4
Psat2g007680 Pisum sativum HOM05D000001 ORTHO05D000003 7.3e-40 167.5 144 63.9
PGSC0003DMG400022173 Solanum tuberosum HOM05D005924 ORTHO05D007290 7.3e-40 167.5 142 63.4
EL10Ac4g07594 Beta vulgaris HOM05D005924 ORTHO05D007290 9.6e-40 167.2 147 65.3
Cc05_g14880 Coffea canephora HOM05D005924 ORTHO05D007290 9.6e-40 167.2 141 67.4
Lsat_1_v5_gn_5_1420 Lactuca sativa HOM05D005924 ORTHO05D007290 1.3e-39 166.8 145 67.6
Actinidia37157 Actinidia chinensis HOM05D005924 ORTHO05D007290 2.1e-39 166.0 126 73.0
MBI16_g07767_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 2.1e-39 166.0 132 69.7
AUR62036442 Chenopodium quinoa HOM05D005924 ORTHO05D007290 2.8e-39 165.6 146 63.0
Glyma.14G013900 Glycine max HOM05D005924 ORTHO05D007290 2.8e-39 165.6 129 66.7
PSO302G0279 Papaver somniferum HOM05D005924 ORTHO05D007290 2.8e-39 165.6 143 62.2
ATR0624G098 Amborella trichopoda HOM05D005924 ORTHO05D007290 1.1e-38 163.7 142 61.3
Sp6g17560 Schrenkiella parvula HOM05D005924 ORTHO05D007290 1.1e-38 163.7 137 65.0
unitig_0.g996 Utricularia gibba HOM05D005924 ORTHO05D007290 1.1e-38 163.7 141 60.3
MSTRG.13019 Avicennia marina HOM05D005924 ORTHO05D007290 1.4e-38 163.3 141 64.5
PSO210G6324 Papaver somniferum HOM05D005924 ORTHO05D007290 1.4e-38 163.3 143 61.5
Sopen07g033690 Solanum pennellii HOM05D005924 ORTHO05D007290 2.4e-38 162.5 143 61.5
Carub.0008s1601 Capsella rubella HOM05D005924 ORTHO05D007290 3.1e-38 162.2 145 64.1
DCAR_018844 Daucus carota HOM05D005924 ORTHO05D007290 5.3e-38 161.4 134 63.4
Peaxi162Scf01164g00127 Petunia axillaris HOM05D005924 ORTHO05D007290 1.2e-37 160.2 129 66.7
Solyc07g065480.3 Solanum lycopersicum HOM05D005924 ORTHO05D007290 1.2e-37 160.2 142 61.3
AUR62017085 Chenopodium quinoa HOM05D005924 ORTHO05D007290 1.5e-37 159.8 146 62.3
HanXRQChr08g0231191 Helianthus annuus HOM05D005924 ORTHO05D007290 2.6e-37 159.1 144 61.1
AL8G31220 Arabidopsis lyrata HOM05D005924 ORTHO05D007290 3.4e-37 158.7 134 67.2
Oeu049390.1 Olea europaea HOM05D005924 ORTHO05D007290 4.5e-37 158.3 123 69.1
Nitab4.5_0000461g0270 Nicotiana tabacum HOM05D005924 ORTHO05D007290 1.3e-36 156.8 143 62.2
Nitab4.5_0014607g0010 Nicotiana tabacum HOM05D005924 ORTHO05D007290 1.3e-36 156.8 143 61.5
CDE10G1040 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 2.7e-34 149.1 143 58.7
BcaC04g20212 Brassica carinata HOM05D005924 ORTHO05D007290 3.5e-34 148.7 139 59.7
C09p46620 Brassica napus HOM05D005924 ORTHO05D007290 3.5e-34 148.7 139 59.7
Aa31LG3G11590 Aethionema arabicum HOM05D005924 ORTHO05D007290 2.3e-33 146.0 152 58.6
Manes.03G140800 Manihot esculenta HOM05D005924 ORTHO05D007290 2.3e-33 146.0 125 68.8
CDE10G1343 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 3.0e-33 145.6 139 57.6
CARHR268960 Cardamine hirsuta HOM05D005924 ORTHO05D007290 3.9e-33 145.2 125 64.8
BolC9t57514H Brassica oleracea HOM05D005924 ORTHO05D007290 8.7e-33 144.1 141 58.9
Sc16g0008020 Simmondsia chinensis HOM05D005924 ORTHO05D007290 1.1e-32 143.7 145 60.7
Atru.BG.148.p Acer truncatum HOM05D005924 ORTHO05D007290 4.3e-32 141.7 91 80.2
BraA10t43385Z Brassica rapa HOM05D005924 ORTHO05D007290 1.3e-31 140.2 129 60.5
A10p12930 Brassica napus HOM05D005924 ORTHO05D007290 4.8e-31 138.3 129 60.5
Ah.06g181380 Amaranthus hybridus HOM05D000864 ORTHO05D002353 6.2e-31 137.9 122 59.0
BcaB08g35925 Brassica carinata HOM05D005924 ORTHO05D007290 3.1e-30 135.6 126 61.9
Os03g0595200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 1.2e-29 133.7 125 58.4
SEGI_16066 Sequoiadendron giganteum HOM05D005924 ORTHO05D007290 8.4e-28 127.5 148 53.4
C09p47070 Brassica napus HOM05D005924 ORTHO05D007290 1.2e-26 123.6 123 58.5
Zm00001eb049780 Zea mays HOM05D005924 ORTHO05D007290 1.3e-25 120.2 144 50.7
HPP92_006039 Vanilla planifolia HOM05D005924 ORTHO05D007290 1.5e-24 116.7 93 66.7
TAR626G0711 Trochodendron aralioides HOM05D005924 ORTHO05D007290 2.8e-23 112.5 128 53.9
BcaC04g20171 Brassica carinata HOM05D005924 ORTHO05D007290 4.8e-23 111.7 89 67.4
Pp3c5_24890 Physcomitrium patens HOM05D005924 ORTHO05D007290 3.1e-22 109.0 148 43.2
Mapoly0038s0106 Marchantia polymorpha HOM05D005924 ORTHO05D007290 2.0e-21 106.3 143 46.9
Pp3c6_3770 Physcomitrium patens HOM05D005924 ORTHO05D007290 2.0e-21 106.3 145 44.1
arahy.Tifrunner.gnm1.ann1.HJ67LJ Arachis hypogaea HOM05D005924 ORTHO05D007290 5.8e-21 104.8 99 62.6
SMO145G0101 Selaginella moellendorffii HOM05D005924 ORTHO05D007290 3.2e-19 99.0 154 44.8
BolC9t57844H Brassica oleracea HOM05D005924 ORTHO05D007290 2.5e-16 89.4 97 60.8
BcaC04g19914 Brassica carinata HOM05D005924 ORTHO05D007290 9.7e-16 87.4 104 56.7
Os03g0412200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 1.1e-14 84.0 91 49.5
Zm00001eb019850 Zea mays HOM05D005924 ORTHO05D007290 1.2e-10 70.5 108 40.7
arahy.Tifrunner.gnm1.ann1.7WZH36 Arachis hypogaea HOM05D005924 ORTHO05D007290 7.9e-10 67.8 53 56.6
PSO210G6050 Papaver somniferum HOM05D000045 ORTHO05D000067 1.4e-09 67.0 82 56.1
AagrBONN_evm.TU.Sc2ySwM_340.252 Anthoceros agrestis HOM05D005924 ORTHO05D007290 4.8e-07 58.5 106 42.5
C09p49910 Brassica napus HOM05D005924 ORTHO05D007290 4.8e-07 58.5 43 62.8
CBR_g27765 Chara braunii HOM05D005924 ORTHO05D007290 6.9e-06 54.7 131 32.1


User provided reference genes

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