Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 9.1e-113 410.2 203 100.0
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 3.2e-102 375.2 204 90.7
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 2.7e-101 372.1 203 87.2
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 7.5e-99 364.0 203 84.7
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 6.3e-98 360.9 227 80.6
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 3.1e-97 358.6 203 85.7
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 9.1e-97 357.1 203 84.7
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 7.7e-96 354.0 203 85.2
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 3.3e-94 348.6 203 83.7
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 3.3e-94 348.6 203 83.7
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 9.5e-94 347.1 203 80.8
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 2.8e-93 345.5 203 79.8
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 3.6e-93 345.1 203 82.3
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 6.1e-93 344.4 203 82.8
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 1.0e-92 343.6 203 81.3
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 1.0e-92 343.6 203 79.3
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 1.7e-90 336.3 205 78.5
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 1.7e-90 336.3 203 76.8
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 3.2e-89 332.0 203 77.3
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 4.1e-89 331.6 202 78.7
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 5.4e-89 331.3 205 77.1
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 5.4e-89 331.3 202 78.2
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 4.6e-88 328.2 204 77.9
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 5.9e-88 327.8 201 75.1
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 5.9e-88 327.8 206 75.2
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 3.9e-87 325.1 204 77.0
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 3.9e-87 325.1 204 77.0
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 5.0e-87 324.7 203 75.4
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 5.0e-87 324.7 202 77.2
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 8.6e-87 323.9 202 75.2
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 1.5e-86 323.2 203 73.9
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 7.3e-86 320.9 204 76.0
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 1.2e-85 320.1 200 75.0
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 1.2e-85 320.1 200 75.0
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 1.2e-85 320.1 202 76.2
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 1.6e-85 319.7 202 73.3
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 1.6e-85 319.7 204 74.5
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 2.1e-85 319.3 204 78.4
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 2.8e-85 318.9 204 76.0
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 2.8e-85 318.9 204 74.0
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 3.6e-85 318.5 204 74.5
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 1.4e-84 316.6 204 75.5
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 1.4e-84 316.6 197 75.6
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 1.8e-84 316.2 203 77.3
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 2.3e-84 315.8 203 72.4
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 6.8e-84 314.3 203 73.4
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 6.8e-84 314.3 203 71.4
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 6.8e-84 314.3 201 74.1
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 6.8e-84 314.3 206 73.3
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 1.2e-83 313.5 204 72.5
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 2.0e-83 312.8 193 77.2
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 7.5e-83 310.8 197 73.1
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 9.8e-83 310.5 197 73.6
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 1.3e-82 310.1 201 72.6
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 1.3e-82 310.1 201 72.6
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 1.3e-82 310.1 201 73.6
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 1.7e-82 309.7 204 73.5
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 1.7e-82 309.7 197 73.6
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 2.2e-82 309.3 205 73.2
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 2.9e-82 308.9 202 71.3
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 3.7e-82 308.5 197 72.1
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 6.4e-82 307.8 201 71.1
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 1.4e-81 306.6 202 72.8
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 1.4e-81 306.6 203 72.4
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 1.9e-81 306.2 201 71.6
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 1.9e-81 306.2 201 71.1
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 2.4e-81 305.8 201 71.1
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 2.4e-81 305.8 201 71.6
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 2.4e-81 305.8 202 71.8
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 2.4e-81 305.8 197 71.6
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 3.2e-81 305.4 201 71.1
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 3.2e-81 305.4 197 72.6
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 3.2e-81 305.4 203 69.5
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 4.1e-81 305.1 201 70.1
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 4.1e-81 305.1 201 70.1
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 4.1e-81 305.1 194 73.2
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 5.4e-81 304.7 203 71.9
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 7.0e-81 304.3 201 71.1
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 7.0e-81 304.3 198 72.2
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 7.0e-81 304.3 201 71.1
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 9.2e-81 303.9 203 72.9
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 9.2e-81 303.9 203 70.4
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 2.0e-80 302.8 201 71.1
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 2.0e-80 302.8 203 68.5
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 2.0e-80 302.8 201 70.1
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 2.0e-80 302.8 255 61.6
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 2.0e-80 302.8 203 70.4
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 2.7e-80 302.4 203 70.9
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 3.5e-80 302.0 201 71.1
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 3.5e-80 302.0 201 71.1
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 3.5e-80 302.0 201 71.1
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 4.6e-80 301.6 201 71.1
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 1.0e-79 300.4 200 70.5
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 1.3e-79 300.1 201 70.6
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 2.3e-79 299.3 197 70.1
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 6.6e-79 297.7 201 70.1
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 3.3e-78 295.4 204 66.7
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 4.3e-78 295.0 203 71.4
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 7.3e-78 294.3 204 66.7
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 1.6e-77 293.1 197 70.6
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 2.1e-77 292.7 211 66.8
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 2.1e-77 292.7 208 70.2
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 2.8e-77 292.4 205 66.3
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 1.1e-76 290.4 204 69.6
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 2.3e-76 289.3 196 69.4
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 3.1e-76 288.9 201 67.7
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 3.1e-76 288.9 202 71.3
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.5e-75 286.6 204 69.1
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 2.6e-75 285.8 204 64.7
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 3.7e-74 282.0 203 67.5
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 5.4e-73 278.1 201 66.2
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 7.1e-73 277.7 201 65.7
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 7.8e-72 274.2 204 66.2
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 1.3e-71 273.5 204 67.6
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 9.5e-70 267.3 208 63.0
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 1.8e-68 263.1 193 65.8
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 3.1e-68 262.3 204 58.3
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 1.7e-66 256.5 203 62.6
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 3.2e-65 252.3 208 59.6
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 1.1e-62 243.8 146 80.8
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 4.7e-61 238.4 139 84.2
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 5.8e-59 231.5 212 54.2
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 4.6e-56 221.9 209 54.1
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 1.7e-55 219.9 137 77.4
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.1e-54 217.2 148 77.0
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 1.1e-54 217.2 206 54.4
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 9.6e-54 214.2 141 73.0
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 4.8e-53 211.8 203 56.7
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 2.4e-52 209.5 145 72.4
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 1.5e-46 190.3 148 62.2
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 6.9e-44 181.4 127 68.5
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 1.5e-43 180.3 206 46.1
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 6.2e-37 158.3 179 49.7
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 4.5e-27 125.6 194 40.7
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 1.3e-26 124.0 98 61.2
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 5.5e-25 118.6 134 47.8
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 1.2e-24 117.5 192 35.9
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 1.3e-23 114.0 77 62.3
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 1.1e-22 110.9 69 75.4
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 7.4e-22 108.2 65 72.3
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 1.3e-21 107.5 128 42.2
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 6.3e-21 105.1 198 35.4
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.9e-17 93.6 69 69.6
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 3.2e-17 92.8 63 73.0
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 2.1e-16 90.1 51 78.4
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 1.4e-12 77.4 74 58.1
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 3.8e-10 69.3 50 68.0
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 3.8e-10 69.3 50 68.0
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 8.5e-10 68.2 121 33.9
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.6e-08 63.9 68 50.0
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 2.1e-08 63.5 43 62.8
CBR_g17083 Chara braunii HOM05D004943 ORTHO05D005953 4.4e-06 55.8 81 40.7
FAN14G0250 Fragaria x ananassa HOM05D027595 ORTHO05D045540 5.7e-06 55.5 128 36.7
Carub.0005s1381 Capsella rubella HOM05D003949 ORTHO05D004504 7.4e-06 55.1 42 57.1


User provided reference genes

Program Settings