Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 1.3e-224 782.7 404 100.0
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 6.9e-205 717.2 405 91.1
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 1.3e-198 696.4 410 87.1
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 3.7e-198 694.9 410 86.6
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 6.9e-197 690.6 410 86.8
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 2.0e-196 689.1 409 85.6
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 7.7e-196 687.2 410 86.3
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 3.8e-195 684.9 409 85.3
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 6.5e-195 684.1 409 84.8
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 4.7e-193 677.9 423 84.9
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 1.8e-192 676.0 415 84.1
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 1.5e-191 672.9 408 85.3
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 1.5e-191 672.9 406 85.0
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 3.3e-191 671.8 409 83.9
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 4.4e-191 671.4 408 83.8
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 1.3e-190 669.8 406 84.7
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 2.8e-190 668.7 409 83.6
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 4.1e-189 664.8 428 81.3
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 5.3e-189 664.5 409 82.6
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 9.1e-189 663.7 406 83.7
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 1.2e-188 663.3 413 83.8
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 3.5e-188 661.8 409 83.1
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 5.9e-188 661.0 411 83.0
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 5.9e-188 661.0 409 83.1
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 2.9e-187 658.7 412 83.3
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 5.0e-187 657.9 407 83.8
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.7e-185 652.1 405 83.0
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.6e-185 651.7 410 82.2
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 6.1e-185 651.0 410 82.0
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 1.8e-184 649.4 410 82.2
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 2.3e-184 649.0 413 80.9
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 4.0e-184 648.3 409 82.6
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 5.2e-184 647.9 414 81.2
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 5.2e-184 647.9 418 80.9
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 5.2e-184 647.9 410 82.0
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 6.7e-184 647.5 409 80.7
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 5.7e-183 644.4 447 77.2
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 9.7e-183 643.7 410 80.5
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 9.7e-183 643.7 410 81.7
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 2.8e-182 642.1 409 80.7
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 4.8e-182 641.3 404 80.9
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 6.3e-182 641.0 420 79.3
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 6.3e-182 641.0 419 79.5
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 8.2e-182 640.6 409 78.7
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 8.2e-182 640.6 409 80.0
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 1.4e-181 639.8 409 80.9
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 2.4e-181 639.0 409 78.5
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 9.1e-181 637.1 410 79.8
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.2e-180 636.7 420 78.8
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 1.2e-180 636.7 409 80.2
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 1.6e-180 636.3 409 80.0
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 2.0e-180 636.0 410 80.0
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 2.7e-180 635.6 409 78.2
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 7.7e-180 634.0 408 79.2
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 1.7e-179 632.9 411 81.0
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 1.7e-179 632.9 404 80.2
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 2.2e-179 632.5 405 80.0
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 2.9e-179 632.1 409 80.9
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 2.9e-179 632.1 412 81.1
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 5.0e-179 631.3 440 75.7
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 6.5e-179 630.9 410 79.0
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 8.5e-179 630.6 408 79.4
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 1.1e-178 630.2 414 79.0
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 1.1e-178 630.2 404 80.2
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 1.9e-178 629.4 415 79.0
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 7.2e-178 627.5 411 79.1
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 7.2e-178 627.5 440 75.0
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 9.4e-178 627.1 413 79.4
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 9.4e-178 627.1 409 79.2
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 1.2e-177 626.7 409 79.2
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 2.1e-177 625.9 407 79.1
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 2.7e-177 625.5 407 79.6
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 3.6e-177 625.2 411 78.3
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 4.7e-177 624.8 414 78.5
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 4.7e-177 624.8 405 79.5
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 8.0e-177 624.0 410 78.3
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 1.8e-176 622.9 411 78.6
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 3.0e-176 622.1 408 78.9
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 6.8e-176 620.9 429 76.7
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 6.8e-176 620.9 403 80.4
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 3.4e-175 618.6 420 77.6
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 1.7e-174 616.3 408 78.7
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 2.2e-174 615.9 418 77.3
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 2.8e-174 615.5 414 78.3
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 8.3e-174 614.0 410 76.8
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 1.1e-173 613.6 410 77.8
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 4.1e-173 611.7 419 76.8
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 3.5e-172 608.6 409 77.8
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 5.0e-171 604.7 424 73.8
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 1.9e-170 602.8 413 77.0
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 9.5e-170 600.5 408 76.0
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 1.2e-169 600.1 355 87.0
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 2.1e-169 599.4 408 75.5
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 3.6e-169 598.6 414 76.3
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 6.1e-169 597.8 412 74.3
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 2.6e-167 592.4 341 88.3
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 2.2e-166 589.3 415 73.7
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 6.3e-166 587.8 409 75.8
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 3.5e-164 582.0 386 76.7
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 5.6e-162 574.7 357 81.5
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 5.6e-162 574.7 357 81.5
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 4.9e-158 561.6 350 81.1
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 1.1e-157 560.5 412 71.1
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 7.8e-156 554.3 410 72.7
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.7e-155 553.1 477 66.0
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.7e-155 553.1 477 66.0
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 8.3e-150 534.3 415 70.1
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 1.3e-147 526.9 345 78.0
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 2.3e-147 526.2 315 84.8
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 2.6e-143 512.7 409 67.7
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 4.4e-143 511.9 354 75.7
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 3.3e-138 495.7 416 60.8
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 3.0e-131 472.6 425 57.4
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 6.0e-124 448.4 422 60.7
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 1.4e-117 427.2 383 56.9
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 2.1e-116 423.3 271 80.4
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 6.0e-116 421.8 402 60.2
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 9.0e-104 381.3 360 61.4
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 1.2e-103 380.9 341 61.6
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 5.8e-103 378.6 324 64.8
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 4.1e-88 329.3 315 55.6
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 5.0e-86 322.4 413 45.5
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.4e-80 304.3 263 63.1
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 1.0e-78 298.1 421 41.3
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 8.2e-73 278.5 467 39.2
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 1.6e-71 274.2 469 36.2
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 1.4e-67 261.2 134 98.5
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 4.1e-64 249.6 325 45.5
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 5.7e-58 229.2 126 85.7
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 7.0e-56 222.2 315 42.5
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 5.7e-50 202.6 344 36.9
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 3.5e-47 193.4 340 34.7
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.9e-46 190.3 103 87.4
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.5e-45 188.0 112 80.4
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 7.3e-45 185.7 98 98.0
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 1.7e-41 174.5 112 76.8
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 6.4e-41 172.6 131 68.7
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 7.0e-32 142.5 153 57.5
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 3.4e-26 123.6 129 55.0
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 1.2e-23 115.2 57 96.5
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.0e-22 112.1 58 84.5
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 2.4e-19 100.9 128 50.0
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 1.5e-18 98.2 101 52.5
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 2.6e-18 97.4 71 73.2
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 3.2e-16 90.5 95 54.7
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 3.5e-15 87.0 65 67.7
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 1.0e-14 85.5 65 73.8
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 5.6e-13 79.7 96 43.8
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 5.6e-13 79.7 43 90.7
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 7.3e-13 79.3 42 97.6
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 6.2e-12 76.3 43 83.7
QL05p082760 Quercus lobata HOM05D004608 ORTHO05D338097 4.0e-11 73.6 46 78.3
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 6.9e-11 72.8 43 74.4
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 6.4e-09 66.2 70 54.3
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 1.9e-08 64.7 31 90.3
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 2.4e-08 64.3 36 83.3
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 2.4e-08 64.3 36 83.3
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 2.4e-08 64.3 36 83.3
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 1.2e-07 62.0 67 50.7
HanXRQChr16g0512931 Helianthus annuus HOM05D004608 ORTHO05D018951 6.0e-07 59.7 36 83.3
Lj3C745G8 Lonicera japonica HOM05D000041 ORTHO05D000452 7.8e-07 59.3 89 47.2
MD05G1213200 Malus domestica HOM05D004608 ORTHO05D006533 7.8e-07 59.3 64 56.2
Sopen12g018380 Solanum pennellii HOM05D000691 ORTHO05D000378 7.8e-07 59.3 120 28.3
MD05G1213500 Malus domestica HOM05D004608 ORTHO05D246297 1.0e-06 58.9 60 58.3
Sopen04g010080 Solanum pennellii HOM05D000004 ORTHO05D000002 1.0e-06 58.9 120 28.3
Sopen07g021860 Solanum pennellii HOM05D000004 ORTHO05D000002 1.0e-06 58.9 120 28.3
Sopen07g004930 Solanum pennellii HOM05D000004 ORTHO05D000002 1.3e-06 58.5 120 28.3
Sopen07g015160 Solanum pennellii HOM05D000691 ORTHO05D000378 1.3e-06 58.5 120 28.3
Sopen09g023520 Solanum pennellii HOM05D000004 ORTHO05D000002 2.3e-06 57.8 120 28.3
QL02p059219 Quercus lobata HOM05D001496 ORTHO05D007453 3.9e-06 57.0 43 72.1
Sopen04g014250 Solanum pennellii HOM05D000004 ORTHO05D000378 6.6e-06 56.2 120 27.5
EL10Ac5g11554 Beta vulgaris HOM05D003131 ORTHO05D003761 8.7e-06 55.8 65 50.8


User provided reference genes

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