Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p000538 Quercus lobata HOM05D006092 ORTHO05D007508 9.9e-86 320.1 163 100.0
Prupe.6G035200 Prunus persica HOM05D006092 ORTHO05D007508 7.7e-62 240.7 164 77.4
Cfa016959 Carpinus fangiana HOM05D006092 ORTHO05D007508 1.0e-61 240.4 166 78.9
Glyma.04G112800 Glycine max HOM05D006092 ORTHO05D007508 1.0e-61 240.4 164 78.0
Haze_09914 Corylus avellana HOM05D006092 ORTHO05D007508 4.2e-60 235.0 165 78.8
MD03G1042800 Malus domestica HOM05D006092 ORTHO05D007508 5.5e-60 234.6 164 76.8
Atru.chr2.3894 Acer truncatum HOM05D006092 ORTHO05D007508 9.4e-60 233.8 162 75.9
Glyma.06G321900 Glycine max HOM05D006092 ORTHO05D007508 1.6e-59 233.0 164 76.2
Thecc.07G001800 Theobroma cacao HOM05D006092 ORTHO05D007508 3.9e-58 228.4 166 77.1
FvH4_3g41620 Fragaria vesca HOM05D006092 ORTHO05D007508 6.7e-58 227.6 164 76.2
FAN11G0712 Fragaria x ananassa HOM05D006092 ORTHO05D007508 6.7e-58 227.6 164 76.2
Lj3g0000125 Lotus japonicus HOM05D006092 ORTHO05D007508 2.0e-57 226.1 167 73.1
FAN25G2470 Fragaria x ananassa HOM05D006092 ORTHO05D007508 3.3e-57 225.3 164 75.6
RcHm_v2.0_Chr5g0074661 Rosa chinensis HOM05D006092 ORTHO05D007508 4.4e-57 224.9 164 75.6
MELO3C014124.2 Cucumis melo HOM05D006092 ORTHO05D007508 1.3e-56 223.4 162 75.3
CsaV3_3G004330 Cucumis sativus L. HOM05D006092 ORTHO05D007508 1.3e-56 223.4 162 75.3
TWI38G1372 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 1.3e-56 223.4 165 76.4
ClCG10G004510 Citrullus lanatus HOM05D006092 ORTHO05D007508 1.7e-56 223.0 162 74.7
MBI15_g47946_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 1.7e-56 223.0 167 71.3
Phvul.005G004000 Phaseolus vulgaris HOM05D006092 ORTHO05D007508 1.7e-56 223.0 168 72.0
Lalb_Chr18g0048631 Lupinus albus HOM05D006092 ORTHO05D007508 2.8e-56 222.2 171 70.2
Ciclev10009769m.g Citrus clementina HOM05D006092 ORTHO05D007508 3.7e-56 221.9 164 75.6
VMungo1080G0991 Vigna mungo HOM05D006092 ORTHO05D007508 4.8e-56 221.5 168 72.0
Potri.011G168700 Populus trichocarpa HOM05D006092 ORTHO05D007508 1.8e-55 219.5 145 79.3
Psat5g231800 Pisum sativum HOM05D006092 ORTHO05D007508 2.4e-55 219.2 163 73.0
Sabra11G0138000 Salix brachista HOM05D006092 ORTHO05D007508 3.1e-55 218.8 146 77.4
TWI39G1159 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 3.1e-55 218.8 165 75.2
Potri.001G471900 Populus trichocarpa HOM05D006092 ORTHO05D007508 5.3e-55 218.0 150 78.0
Eucgr.F03646 Eucalyptus grandis HOM05D006092 ORTHO05D007508 1.5e-54 216.5 163 71.2
Nn1g07635 Nelumbo nucifera HOM05D006092 ORTHO05D007508 1.5e-54 216.5 170 70.6
Gohir.A13G128600 Gossypium hirsutum HOM05D006092 ORTHO05D007508 2.0e-54 216.1 164 72.0
Gohir.D13G132000 Gossypium hirsutum HOM05D006092 ORTHO05D007508 7.7e-54 214.2 162 71.6
Gorai.013G148000 Gossypium raimondii HOM05D006092 ORTHO05D007508 7.7e-54 214.2 162 71.6
Sabra16G0320400 Salix brachista HOM05D006092 ORTHO05D007508 1.0e-53 213.8 147 78.2
BcaC01g01548 Brassica carinata HOM05D006092 ORTHO05D007508 1.3e-53 213.4 167 70.7
BolC3t21605H Brassica oleracea HOM05D006092 ORTHO05D007508 1.3e-53 213.4 167 70.7
Gohir.A04G001100 Gossypium hirsutum HOM05D006092 ORTHO05D007508 1.7e-53 213.0 165 72.7
C03p93010 Brassica napus HOM05D006092 ORTHO05D007508 2.9e-53 212.2 167 70.1
Carub.0001s4419 Capsella rubella HOM05D006092 ORTHO05D007508 2.9e-53 212.2 165 70.3
Cpa.g.sc12.69 Carica papaya HOM05D006092 ORTHO05D007508 5.0e-53 211.5 163 71.8
Sc07g0002210 Simmondsia chinensis HOM05D006092 ORTHO05D007508 5.0e-53 211.5 163 71.2
GSVIVG01014842001 Vitis vinifera HOM05D006092 ORTHO05D007508 6.5e-53 211.1 168 70.8
Gorai.009G454900 Gossypium raimondii HOM05D006092 ORTHO05D007508 1.1e-52 210.3 165 72.1
MBI15_g47073_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 1.1e-52 210.3 164 69.5
TPR.G16714 Trifolium pratense HOM05D006092 ORTHO05D007508 1.1e-52 210.3 164 70.7
EL10Ac3g07451 Beta vulgaris HOM05D006092 ORTHO05D007508 1.5e-52 209.9 165 67.9
BcaC08g44210 Brassica carinata HOM05D006092 ORTHO05D007508 1.5e-52 209.9 165 69.7
BolC6t36815H Brassica oleracea HOM05D006092 ORTHO05D007508 1.5e-52 209.9 165 69.7
A05p17350 Brassica napus HOM05D006092 ORTHO05D007508 1.9e-52 209.5 166 70.5
BraA05t20631Z Brassica rapa HOM05D006092 ORTHO05D007508 1.9e-52 209.5 166 70.5
A08p00380 Brassica napus HOM05D006092 ORTHO05D007508 2.5e-52 209.1 165 70.3
BraA08t32097Z Brassica rapa HOM05D006092 ORTHO05D007508 2.5e-52 209.1 165 70.3
ATR0751G135 Amborella trichopoda HOM05D006092 ORTHO05D007508 3.2e-52 208.8 164 70.1
C06p16180 Brassica napus HOM05D006092 ORTHO05D007508 3.2e-52 208.8 165 69.1
Manes.01G006400 Manihot esculenta HOM05D006092 ORTHO05D007508 3.2e-52 208.8 161 73.9
Sed0026101 Sechium edule HOM05D006092 ORTHO05D007508 4.2e-52 208.4 160 71.9
AT1G55670 Arabidopsis thaliana HOM05D006092 ORTHO05D007508 5.5e-52 208.0 166 69.9
BcaC08g43644 Brassica carinata HOM05D006092 ORTHO05D007508 5.5e-52 208.0 167 69.5
C06p10630 Brassica napus HOM05D006092 ORTHO05D007508 5.5e-52 208.0 167 69.5
BolC6t36143H Brassica oleracea HOM05D006092 ORTHO05D007508 5.5e-52 208.0 167 69.5
MBI14_g12737_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 5.5e-52 208.0 170 66.5
AL1G63740 Arabidopsis lyrata HOM05D006092 ORTHO05D007508 7.2e-52 207.6 167 70.1
A06p00060 Brassica napus HOM05D006092 ORTHO05D007508 1.6e-51 206.5 167 68.9
BraA06t23221Z Brassica rapa HOM05D006092 ORTHO05D007508 1.6e-51 206.5 167 68.9
BcaB04g16937 Brassica carinata HOM05D006092 ORTHO05D007508 2.1e-51 206.1 168 70.2
arahy.Tifrunner.gnm1.ann1.4PD0PP Arachis hypogaea HOM05D006092 ORTHO05D007508 3.6e-51 205.3 163 68.1
BcaB02g10807 Brassica carinata HOM05D006092 ORTHO05D007508 4.7e-51 204.9 167 69.5
Oeu013004.1 Olea europaea HOM05D006092 ORTHO05D007508 8.0e-51 204.1 158 70.3
Thhalv10011835m.g Eutrema salsugineum HOM05D006092 ORTHO05D007508 1.8e-50 203.0 168 70.2
Aa31LG10G560 Aethionema arabicum HOM05D006092 ORTHO05D007508 2.3e-50 202.6 163 68.7
HanXRQChr05g0160351 Helianthus annuus HOM05D006092 ORTHO05D007508 2.3e-50 202.6 137 77.4
THA.LOC104822703 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 2.3e-50 202.6 167 69.5
CARHR045350 Cardamine hirsuta HOM05D006092 ORTHO05D007508 8.8e-50 200.7 167 68.3
PGR031G3987 Punica granatum HOM05D006092 ORTHO05D007508 8.8e-50 200.7 165 67.9
BcaB07g33193 Brassica carinata HOM05D006092 ORTHO05D007508 1.1e-49 200.3 168 67.9
CANSAT11G0425 Cannabis sativa HOM05D006092 ORTHO05D007508 1.1e-49 200.3 166 70.5
PSO063G2976 Papaver somniferum HOM05D006092 ORTHO05D007508 1.5e-49 199.9 164 68.3
PSO782G4285 Papaver somniferum HOM05D006092 ORTHO05D007508 1.5e-49 199.9 164 68.3
Oeu006265.1 Olea europaea HOM05D006092 ORTHO05D007508 5.7e-49 198.0 162 70.4
Rhsim04G0007400 Rhododendron simsii HOM05D006092 ORTHO05D007508 9.7e-49 197.2 162 68.5
SGA_v2.0_scaffold186G40234 Striga asiatica HOM05D006092 ORTHO05D007508 2.2e-48 196.1 135 76.3
HanXRQChr08g0232881 Helianthus annuus HOM05D006092 ORTHO05D007508 3.7e-48 195.3 138 76.1
Solyc07g066150.1 Solanum lycopersicum HOM05D006092 ORTHO05D007508 8.2e-48 194.1 138 73.2
SalBow8G3834 Salvia bowleyana HOM05D006092 ORTHO05D007508 1.1e-47 193.7 137 74.5
CAN.G623.73 Capsicum annuum HOM05D006092 ORTHO05D007508 1.8e-47 193.0 162 68.5
CiPaw.11G210500 Carya illinoinensis HOM05D006092 ORTHO05D007508 1.8e-47 193.0 162 67.3
ECA246G4981 Erigeron canadensis HOM05D006092 ORTHO05D007508 1.8e-47 193.0 159 69.2
THA.LOC104810303 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 1.8e-47 193.0 163 66.3
Ah.04g149440 Amaranthus hybridus HOM05D006092 ORTHO05D007508 3.1e-47 192.2 146 68.5
Aqoxy4G02265 Aquilegia oxysepala HOM05D006092 ORTHO05D007508 3.1e-47 192.2 173 65.9
Nitab4.5_0000611g0110 Nicotiana tabacum HOM05D006092 ORTHO05D007508 4.1e-47 191.8 164 68.3
PGSC0003DMG400022249 Solanum tuberosum HOM05D006092 ORTHO05D007508 5.3e-47 191.4 138 72.5
Nitab4.5_0000611g0120 Nicotiana tabacum HOM05D006092 ORTHO05D007508 7.0e-47 191.0 170 65.9
Sopen07g034330 Solanum pennellii HOM05D006092 ORTHO05D007508 7.0e-47 191.0 138 72.5
CDE05G1532 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 1.2e-46 190.3 164 63.4
CDE11G0224 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 1.2e-46 190.3 164 63.4
CARHR087970 Cardamine hirsuta HOM05D006092 ORTHO05D007508 2.0e-46 189.5 168 69.0
Lsat_1_v5_gn_5_381 Lactuca sativa HOM05D006092 ORTHO05D007508 2.0e-46 189.5 138 75.4
AUR62018553 Chenopodium quinoa HOM05D006092 ORTHO05D007508 2.6e-46 189.1 100 92.0
AUR62020866 Chenopodium quinoa HOM05D006092 ORTHO05D007508 2.6e-46 189.1 100 92.0
Nitab4.5_0001622g0160 Nicotiana tabacum HOM05D006092 ORTHO05D007508 3.5e-46 188.7 170 64.7
Sed0012341 Sechium edule HOM05D006092 ORTHO05D007508 3.5e-46 188.7 137 73.7
unitig_37.g11908 Utricularia gibba HOM05D006092 ORTHO05D007508 3.5e-46 188.7 135 74.8
COL.COLO4_07787 Corchorus olitorius HOM05D006092 ORTHO05D007508 4.5e-46 188.3 100 92.0
Medtr3g010000 Medicago truncatula HOM05D006092 ORTHO05D007508 4.5e-46 188.3 168 64.3
Lj8P183T26 Lonicera japonica HOM05D006092 ORTHO05D007508 1.7e-45 186.4 167 64.7
Migut.M01583 Erythranthe guttata HOM05D006092 ORTHO05D007508 8.5e-45 184.1 166 63.9
unitig_92.g28271 Utricularia gibba HOM05D006092 ORTHO05D007508 8.5e-45 184.1 132 72.7
Zm00001eb101660 Zea mays HOM05D006092 ORTHO05D007508 3.6e-43 178.7 100 85.0
Os09g0481200 Oryza sativa ssp. japonica HOM05D006092 ORTHO05D007508 8.0e-43 177.6 140 66.4
Zm00001eb316290 Zea mays HOM05D006092 ORTHO05D007508 1.4e-42 176.8 120 74.2
HPP92_022812 Vanilla planifolia HOM05D006092 ORTHO05D007508 2.6e-41 172.6 163 62.6
Dinv40914 Davidia involucrata HOM05D006092 ORTHO05D007508 3.7e-40 168.7 158 62.7
SEGI_13197 Sequoiadendron giganteum HOM05D006092 ORTHO05D007508 1.1e-39 167.2 143 65.7
Nitab4.5_0000611g0130 Nicotiana tabacum HOM05D006092 ORTHO05D007508 1.7e-37 159.8 154 63.6
SMO353G0046 Selaginella moellendorffii HOM05D006092 ORTHO05D007508 1.5e-33 146.7 97 71.1
Pp3c9_15440 Physcomitrium patens HOM05D006092 ORTHO05D007508 5.4e-31 138.3 167 47.3
Pp3c15_5850 Physcomitrium patens HOM05D006092 ORTHO05D007508 3.5e-30 135.6 123 56.1
AagrBONN_evm.TU.Sc2ySwM_228.5128 Anthoceros agrestis HOM05D006092 ORTHO05D007508 4.5e-30 135.2 116 61.2
Mapoly0038s0054 Marchantia polymorpha HOM05D006092 ORTHO05D007508 7.7e-30 134.4 143 51.0
Sp1g41280 Schrenkiella parvula HOM05D006092 ORTHO05D007508 2.9e-29 132.5 166 52.4
CBR_g28070 Chara braunii HOM05D006092 ORTHO05D007508 3.6e-27 125.6 93 63.4
TAR627G0509 Trochodendron aralioides HOM05D006092 ORTHO05D007508 6.8e-26 121.3 73 80.8
PGSC0003DMG400006702 Solanum tuberosum HOM05D006092 ORTHO05D007508 4.0e-18 95.5 127 47.2
EL10As5g23536 Beta vulgaris HOM05D006092 ORTHO05D007508 6.8e-18 94.7 52 88.5
PRCOL_00006984 Prasinoderma coloniale HOM05D006092 ORTHO05D007508 8.9e-18 94.4 89 53.9
EL10Ac3g06625 Beta vulgaris HOM05D006092 ORTHO05D007508 4.4e-17 92.0 50 90.0
EL10Ac5g10941 Beta vulgaris HOM05D006092 ORTHO05D007508 4.4e-17 92.0 50 90.0
MCO01G478 Micromonas commoda HOM05D006092 ORTHO05D007508 1.7e-16 90.1 99 50.5
Cre12.g560950 Chlamydomonas reinhardtii HOM05D006092 ORTHO05D007508 4.0e-10 68.9 116 36.2


User provided reference genes

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