Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p000169 Quercus lobata HOM05D002887 ORTHO05D003159 3.2e-63 245.0 127 100.0
Haze_09925 Corylus avellana HOM05D002887 ORTHO05D003159 2.3e-37 159.1 127 69.3
Cfa016970 Carpinus fangiana HOM05D002887 ORTHO05D003159 1.3e-35 153.3 127 68.5
GSVIVG01014858001 Vitis vinifera HOM05D002887 ORTHO05D003159 8.4e-32 140.6 127 59.1
MD11G1047600 Malus domestica HOM05D002887 ORTHO05D003159 2.5e-28 129.0 127 55.1
Ciclev10007786m.g Citrus clementina HOM05D002887 ORTHO05D003159 1.3e-27 126.7 126 57.1
RcHm_v2.0_Chr5g0074291 Rosa chinensis HOM05D002887 ORTHO05D003159 2.8e-27 125.6 127 55.1
ClCG09G021800 Citrullus lanatus HOM05D002887 ORTHO05D003159 1.8e-26 122.9 118 58.5
FvH4_3g41370 Fragaria vesca HOM05D002887 ORTHO05D003159 6.9e-26 120.9 126 52.4
FAN11G2314 Fragaria x ananassa HOM05D002887 ORTHO05D003159 6.9e-26 120.9 126 52.4
Dinv19635 Davidia involucrata HOM05D002887 ORTHO05D003159 3.4e-25 118.6 118 57.6
FAN21G1274 Fragaria x ananassa HOM05D002887 ORTHO05D003159 1.3e-24 116.7 126 51.6
FAN25G0222 Fragaria x ananassa HOM05D002887 ORTHO05D003159 3.8e-24 115.2 126 50.8
DCAR_016809 Daucus carota HOM05D002887 ORTHO05D003159 1.1e-23 113.6 125 51.2
Oeu052878.1 Olea europaea HOM05D002887 ORTHO05D003159 1.9e-23 112.8 127 52.0
Atru.chr2.3909 Acer truncatum HOM05D002887 ORTHO05D003159 3.2e-23 112.1 126 50.8
Rhsim04G0006800 Rhododendron simsii HOM05D002887 ORTHO05D003159 9.3e-23 110.5 117 55.6
MELO3C013232.2 Cucumis melo HOM05D002887 ORTHO05D003159 1.6e-22 109.8 119 55.5
Lj1C902G8 Lonicera japonica HOM05D002887 ORTHO05D003159 1.6e-22 109.8 124 50.8
TWI39G1273 Tripterygium wilfordii HOM05D002887 ORTHO05D003159 4.6e-22 108.2 126 50.0
vmacro09794 Vaccinium macrocarpon HOM05D002887 ORTHO05D003159 7.9e-22 107.5 117 53.0
Carub.0001s4411 Capsella rubella HOM05D002887 ORTHO05D003159 5.1e-21 104.8 126 50.0
CsaV3_7G021230 Cucumis sativus L. HOM05D002887 ORTHO05D003159 6.7e-21 104.4 124 52.4
PGR119G2044 Punica granatum HOM05D002887 ORTHO05D003159 1.5e-20 103.2 126 45.2
AL1G63640 Arabidopsis lyrata HOM05D002887 ORTHO05D003159 2.5e-20 102.4 126 49.2
Manes.06G049300 Manihot esculenta HOM05D002887 ORTHO05D003159 3.3e-20 102.1 130 50.0
A06p00120 Brassica napus HOM05D002887 ORTHO05D003159 4.3e-20 101.7 126 47.6
Sp1g41210 Schrenkiella parvula HOM05D002887 ORTHO05D003159 5.7e-20 101.3 126 46.8
MSTRG.14532 Avicennia marina HOM05D002887 ORTHO05D003159 9.7e-20 100.5 114 48.2
AT1G55590 Arabidopsis thaliana HOM05D002887 ORTHO05D003159 1.3e-19 100.1 126 48.4
BcaC08g43637 Brassica carinata HOM05D002887 ORTHO05D003159 1.3e-19 100.1 126 47.6
C06p10530 Brassica napus HOM05D002887 ORTHO05D003159 1.3e-19 100.1 126 47.6
BolC6t36133H Brassica oleracea HOM05D002887 ORTHO05D003159 1.3e-19 100.1 126 47.6
Migut.H01703 Erythranthe guttata HOM05D002887 ORTHO05D003159 1.3e-19 100.1 119 47.1
BraA06t23230Z Brassica rapa HOM05D002887 ORTHO05D003159 2.2e-19 99.4 126 46.8
Aa31LG10G620 Aethionema arabicum HOM05D002887 ORTHO05D003159 2.8e-19 99.0 126 47.6
Thhalv10011328m.g Eutrema salsugineum HOM05D002887 ORTHO05D003159 2.8e-19 99.0 126 47.6
SGA_v2.0_scaffold49G18166 Striga asiatica HOM05D002887 ORTHO05D003159 6.3e-19 97.8 118 45.8
THA.LOC104810311 Tarenaya hassleriana HOM05D002887 ORTHO05D003159 6.3e-19 97.8 126 46.8
Sed0024070 Sechium edule HOM05D002887 ORTHO05D003159 8.2e-19 97.4 119 50.4
Cc05_g15820 Coffea canephora HOM05D002887 ORTHO05D003159 1.4e-18 96.7 125 48.8
Potri.011G169800 Populus trichocarpa HOM05D002887 ORTHO05D003159 1.8e-18 96.3 127 47.2
CSS0049070 Camellia sinensis var. sinensis HOM05D002887 ORTHO05D003159 4.1e-18 95.1 127 48.0
CSS0039257 Camellia sinensis var. sinensis HOM05D002887 ORTHO05D003159 1.2e-17 93.6 118 49.2
Nitab4.5_0001235g0010 Nicotiana tabacum HOM05D002887 ORTHO05D003159 1.2e-17 93.6 118 47.5
Nitab4.5_0000294g0200 Nicotiana tabacum HOM05D002887 ORTHO05D003159 2.0e-17 92.8 118 46.6
Sabra11G0137200 Salix brachista HOM05D002887 ORTHO05D003159 3.4e-17 92.0 127 44.9
Lsat_1_v5_gn_7_116000 Lactuca sativa HOM05D002887 ORTHO05D003159 5.9e-17 91.3 120 49.2
FAN16G2949 Fragaria x ananassa HOM05D002887 ORTHO05D003159 7.6e-17 90.9 112 46.4
MBI14_g10260_MAGBIO Magnolia biondii HOM05D002887 ORTHO05D003159 8.5e-16 87.4 117 42.7
BcaB07g33199 Brassica carinata HOM05D002887 ORTHO05D003159 3.2e-15 85.5 115 47.0
Eucgr.J00763 Eucalyptus grandis HOM05D002887 ORTHO05D003159 4.2e-15 85.1 117 43.6
HanXRQChr11g0335231 Helianthus annuus HOM05D002887 ORTHO05D003159 5.5e-15 84.7 121 45.5
ECA236G2003 Erigeron canadensis HOM05D002887 ORTHO05D003159 2.1e-14 82.8 130 38.5
Peaxi162Scf00232g00091 Petunia axillaris HOM05D002887 ORTHO05D003159 2.1e-14 82.8 118 42.4
ECA236G4850 Erigeron canadensis HOM05D002887 ORTHO05D003159 6.1e-14 81.3 121 41.3
CAN.G623.99 Capsicum annuum HOM05D002887 ORTHO05D003159 1.0e-13 80.5 118 41.5
CAN.G623.89 Capsicum annuum HOM05D002887 ORTHO05D003159 1.8e-13 79.7 118 41.5
CAN.G623.83 Capsicum annuum HOM05D002887 ORTHO05D003159 5.1e-13 78.2 118 41.5
CAN.G623.93 Capsicum annuum HOM05D002887 ORTHO05D003159 5.1e-13 78.2 118 41.5
Solyc07g066240.3 Solanum lycopersicum HOM05D002887 ORTHO05D003159 8.8e-13 77.4 118 39.8
Sopen07g034420 Solanum pennellii HOM05D002887 ORTHO05D003159 8.8e-13 77.4 118 39.8
SEGI_23346 Sequoiadendron giganteum HOM05D002887 ORTHO05D003159 4.3e-12 75.1 128 39.8
CAN.G623.97 Capsicum annuum HOM05D002887 ORTHO05D003159 3.7e-11 72.0 123 39.8
arahy.Tifrunner.gnm1.ann1.DJ9YQ7 Arachis hypogaea HOM05D002887 ORTHO05D003159 1.8e-10 69.7 117 35.0
arahy.Tifrunner.gnm1.ann1.HJG5YQ Arachis hypogaea HOM05D002887 ORTHO05D003159 1.8e-10 69.7 117 35.0
PGSC0003DMG400022245 Solanum tuberosum HOM05D002887 ORTHO05D003159 4.1e-10 68.6 112 38.4
CAN.G943.15 Capsicum annuum HOM05D002887 ORTHO05D003159 6.9e-10 67.8 118 38.1
Phvul.007G016400 Phaseolus vulgaris HOM05D002887 ORTHO05D003159 6.9e-10 67.8 125 35.2
Medtr1g114010 Medicago truncatula HOM05D002887 ORTHO05D003159 9.1e-10 67.4 117 35.0
Ca_03284_v3 Cicer arietinum L. HOM05D002887 ORTHO05D003159 1.2e-09 67.0 117 34.2
Lalb_Chr06g0163831 Lupinus albus HOM05D002887 ORTHO05D003159 1.2e-09 67.0 117 34.2
Os08g0499900 Oryza sativa ssp. japonica HOM05D002887 ORTHO05D003159 1.2e-09 67.0 114 36.8
TPR.G2454 Trifolium pratense HOM05D002887 ORTHO05D003159 2.0e-09 66.2 117 33.3
Eucgr.I01466 Eucalyptus grandis HOM05D002887 ORTHO05D003159 7.7e-09 64.3 127 30.7
Glyma.20G105000 Glycine max HOM05D002887 ORTHO05D003159 1.3e-08 63.5 127 33.1
Lj5g0021290 Lotus japonicus HOM05D002887 ORTHO05D003159 1.7e-08 63.2 117 34.2
HPP92_018919 Vanilla planifolia HOM05D002887 ORTHO05D003159 1.7e-08 63.2 117 38.5
CiPaw.05G086400 Carya illinoinensis HOM05D002887 ORTHO05D003159 2.2e-08 62.8 117 35.0
Zm00001eb199550 Zea mays HOM05D002887 ORTHO05D003159 2.2e-08 62.8 117 34.2
VMungo0720G3147 Vigna mungo HOM05D002887 ORTHO05D003159 2.9e-08 62.4 125 33.6
CAN.G523.32 Capsicum annuum HOM05D002887 ORTHO05D003159 3.8e-08 62.0 76 46.1
Prupe.8G170700 Prunus persica HOM05D002887 ORTHO05D003159 3.8e-08 62.0 117 31.6
TWI79G0907 Tripterygium wilfordii HOM05D002887 ORTHO05D003159 5.0e-08 61.6 126 32.5
MD05G1127000 Malus domestica HOM05D002887 ORTHO05D003159 6.5e-08 61.2 117 31.6
SGA_v2.0_scaffold32G13321 Striga asiatica HOM05D002887 ORTHO05D003159 6.5e-08 61.2 126 31.7
RcHm_v2.0_Chr6g0279151 Rosa chinensis HOM05D002887 ORTHO05D003159 8.5e-08 60.8 117 31.6
Solyc01g111890.3 Solanum lycopersicum HOM05D002887 ORTHO05D003159 8.5e-08 60.8 117 31.6
Dinv14138 Davidia involucrata HOM05D002887 ORTHO05D003159 1.1e-07 60.5 117 30.8
Lj5A175G92 Lonicera japonica HOM05D002887 ORTHO05D003159 1.1e-07 60.5 117 33.3
HPP92_026887 Vanilla planifolia HOM05D002887 ORTHO05D003159 1.1e-07 60.5 127 32.3
CDE05G0350 Ceratophyllum demersum HOM05D002887 ORTHO05D003159 1.4e-07 60.1 117 34.2
CsaV3_7G001330 Cucumis sativus L. HOM05D002887 ORTHO05D003159 1.4e-07 60.1 117 32.5
FAN15G2445 Fragaria x ananassa HOM05D002887 ORTHO05D003159 1.4e-07 60.1 117 32.5
Cpa.g.sc20.128 Carica papaya HOM05D002887 ORTHO05D003159 1.9e-07 59.7 117 31.6
PSO541G1018 Papaver somniferum HOM05D002887 ORTHO05D003159 1.9e-07 59.7 118 33.1
PSO675G9002 Papaver somniferum HOM05D002887 ORTHO05D003159 1.9e-07 59.7 118 33.1
TAR625G0093 Trochodendron aralioides HOM05D002887 ORTHO05D003159 1.9e-07 59.7 126 32.5
Zm00001eb022020 Zea mays HOM05D002149 ORTHO05D002154 1.9e-07 59.7 116 33.6
Potri.004G179571 Populus trichocarpa HOM05D002887 ORTHO05D003159 2.5e-07 59.3 119 30.3
Sabra04G0120900 Salix brachista HOM05D002887 ORTHO05D003159 3.2e-07 58.9 119 31.1
Duzib248G0120 Durio zibethinus HOM05D002887 ORTHO05D003159 4.2e-07 58.5 117 33.3
FAN27G1571 Fragaria x ananassa HOM05D002887 ORTHO05D003159 4.2e-07 58.5 117 32.5
CiPaw.06G119200 Carya illinoinensis HOM05D002887 ORTHO05D003159 5.5e-07 58.2 117 32.5
CDE05G3170 Ceratophyllum demersum HOM05D002887 ORTHO05D003159 5.5e-07 58.2 117 35.9
AUR62012987 Chenopodium quinoa HOM05D002887 ORTHO05D003159 5.5e-07 58.2 127 29.9
COL.COLO4_18011 Corchorus olitorius HOM05D002887 ORTHO05D003159 5.5e-07 58.2 117 31.6
Rhsim11G0194600 Rhododendron simsii HOM05D002887 ORTHO05D003159 5.5e-07 58.2 117 32.5
Os03g0135400 Oryza sativa ssp. japonica HOM05D002887 ORTHO05D003159 7.2e-07 57.8 125 31.2
PGR142G2418 Punica granatum HOM05D002887 ORTHO05D003159 7.2e-07 57.8 126 29.4
Ah.01g023360 Amaranthus hybridus HOM05D002887 ORTHO05D003159 9.4e-07 57.4 127 31.5
HPP92_003489 Vanilla planifolia HOM05D002887 ORTHO05D003159 9.4e-07 57.4 113 34.5
Actinidia20539 Actinidia chinensis HOM05D002887 ORTHO05D003159 1.2e-06 57.0 117 29.9
EL10Ac9g21324 Beta vulgaris HOM05D002887 ORTHO05D003159 1.2e-06 57.0 127 30.7
Hund00008 Selenicereus undatus HOM05D002887 ORTHO05D003159 1.6e-06 56.6 127 32.3
THA.LOC104804318 Tarenaya hassleriana HOM05D002887 ORTHO05D003159 1.6e-06 56.6 117 33.3
FvH4_2g15790 Fragaria vesca HOM05D002887 ORTHO05D003159 2.1e-06 56.2 117 30.8
FAN24G2689 Fragaria x ananassa HOM05D002887 ORTHO05D003159 2.1e-06 56.2 117 30.8
Gohir.A12G035800 Gossypium hirsutum HOM05D002887 ORTHO05D003159 2.1e-06 56.2 117 29.9
Nitab4.5_0003679g0010 Nicotiana tabacum HOM05D002887 ORTHO05D003159 2.1e-06 56.2 127 30.7
Nitab4.5_0004557g0010 Nicotiana tabacum HOM05D002887 ORTHO05D003159 2.1e-06 56.2 117 30.8
CANSAT25G0878 Cannabis sativa HOM05D002887 ORTHO05D003159 2.7e-06 55.8 117 29.9
Gorai.008G038000 Gossypium raimondii HOM05D002887 ORTHO05D003159 2.7e-06 55.8 117 30.8
Sed0016468 Sechium edule HOM05D002887 ORTHO05D003159 2.7e-06 55.8 129 36.4
CSS0044899 Camellia sinensis var. sinensis HOM05D002887 ORTHO05D003159 3.6e-06 55.5 117 30.8
RcHm_v2.0_Chr3g0493531 Rosa chinensis HOM05D002887 ORTHO05D003159 3.6e-06 55.5 51 60.8
A09p11180 Brassica napus HOM05D002887 ORTHO05D003159 4.7e-06 55.1 117 30.8
Ciclev10028005m.g Citrus clementina HOM05D002887 ORTHO05D003159 4.7e-06 55.1 113 31.9
Cc09_g10430 Coffea canephora HOM05D002887 ORTHO05D003159 4.7e-06 55.1 122 31.1
ATR0661G100 Amborella trichopoda HOM05D002887 ORTHO05D003159 6.1e-06 54.7 117 31.6
BraA09t36760Z Brassica rapa HOM05D002887 ORTHO05D003159 6.1e-06 54.7 117 30.8
Gohir.D12G036800 Gossypium hirsutum HOM05D002887 ORTHO05D003159 6.1e-06 54.7 117 29.9
Aa31LG8G14210 Aethionema arabicum HOM05D002887 ORTHO05D003159 7.9e-06 54.3 117 29.1
BcaC04g22994 Brassica carinata HOM05D002887 ORTHO05D003159 7.9e-06 54.3 117 30.8
C09p13220 Brassica napus HOM05D002887 ORTHO05D003159 7.9e-06 54.3 117 30.8
BolC9t54215H Brassica oleracea HOM05D002887 ORTHO05D003159 7.9e-06 54.3 117 30.8
CAN.G588.111 Capsicum annuum HOM05D002887 ORTHO05D003159 7.9e-06 54.3 117 29.9
PGSC0003DMG400018645 Solanum tuberosum HOM05D002887 ORTHO05D003159 7.9e-06 54.3 117 29.1


User provided reference genes

Program Settings