Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p048914 Quercus lobata HOM05D008240 ORTHO05D010333 3.4e-32 141.0 67 100.0
Psat6g197280 Pisum sativum HOM05D008240 ORTHO05D010333 8.7e-12 73.2 41 80.5
CiPaw.06G002300 Carya illinoinensis HOM05D008240 ORTHO05D010333 1.9e-11 72.0 45 77.8
Medtr1g100890 Medicago truncatula HOM05D008240 ORTHO05D010333 6.2e-10 67.0 39 76.9
Haze_00010 Corylus avellana HOM05D008240 ORTHO05D010333 8.2e-10 66.6 39 79.5
TPR.G27012 Trifolium pratense HOM05D008240 ORTHO05D010333 4.0e-09 64.3 40 77.5
Dinv28418 Davidia involucrata HOM05D008240 ORTHO05D002863 5.3e-09 63.9 43 69.8
arahy.Tifrunner.gnm1.ann1.ES0TVM Arachis hypogaea HOM05D008240 ORTHO05D010333 9.0e-09 63.2 39 76.9
VMungo1127G0785 Vigna mungo HOM05D008240 ORTHO05D010333 2.0e-08 62.0 34 82.4
Prupe.2G297100 Prunus persica HOM05D008240 ORTHO05D010333 2.6e-08 61.6 35 80.0
arahy.Tifrunner.gnm1.ann1.MUHC0Z Arachis hypogaea HOM05D002671 ORTHO05D010333 3.4e-08 61.2 39 74.4
Glyma.12G005800 Glycine max HOM05D008240 ORTHO05D010333 3.4e-08 61.2 34 82.4
RcHm_v2.0_Chr1g0377781 Rosa chinensis HOM05D008240 ORTHO05D010333 3.4e-08 61.2 35 77.1
Ciclev10006392m.g Citrus clementina HOM05D008240 ORTHO05D010333 4.5e-08 60.8 41 73.2
Hma1.2p1_0227F.1_g095850 Hydrangea macrophylla HOM05D008240 ORTHO05D010333 4.5e-08 60.8 45 68.9
Phvul.011G006600 Phaseolus vulgaris HOM05D008240 ORTHO05D010333 5.8e-08 60.5 34 79.4
COL.COLO4_03572 Corchorus olitorius HOM05D008240 ORTHO05D010333 1.3e-07 59.3 33 81.8
COL.COLO4_28004 Corchorus olitorius HOM05D008240 ORTHO05D010333 1.3e-07 59.3 33 81.8
Lalb_Chr21g0305111 Lupinus albus HOM05D008240 ORTHO05D010333 1.3e-07 59.3 27 96.3
Thecc.03G179600 Theobroma cacao HOM05D008240 ORTHO05D010333 1.7e-07 58.9 34 79.4
Nitab4.5_0004439g0090 Nicotiana tabacum HOM05D008240 ORTHO05D010333 2.2e-07 58.5 54 55.6
Gohir.A12G256400 Gossypium hirsutum HOM05D008240 ORTHO05D010333 3.8e-07 57.8 33 81.8
Gohir.D12G257700 Gossypium hirsutum HOM05D008240 ORTHO05D010333 3.8e-07 57.8 33 81.8
Gorai.008G276000 Gossypium raimondii HOM05D008240 ORTHO05D010333 3.8e-07 57.8 33 81.8
Manes.06G149600 Manihot esculenta HOM05D008240 ORTHO05D010333 6.5e-07 57.0 34 76.5
Atru.chr1.425 Acer truncatum HOM05D008240 ORTHO05D010333 8.4e-07 56.6 33 78.8
CSS0023725 Camellia sinensis var. sinensis HOM05D008240 ORTHO05D010333 8.4e-07 56.6 47 68.1
Manes.14G024900 Manihot esculenta HOM05D008240 ORTHO05D010333 8.4e-07 56.6 33 78.8
Nn6g33426 Nelumbo nucifera HOM05D008240 ORTHO05D010333 8.4e-07 56.6 44 59.1
Actinidia34129 Actinidia chinensis HOM05D000206 ORTHO05D002863 1.4e-06 55.8 61 47.5
PGSC0003DMG400015797 Solanum tuberosum HOM05D008240 ORTHO05D010333 1.9e-06 55.5 44 63.6
FvH4_7g29780 Fragaria vesca HOM05D008240 ORTHO05D010333 2.5e-06 55.1 30 76.7
Sc13g0008860 Simmondsia chinensis HOM05D008240 ORTHO05D010333 4.2e-06 54.3 38 65.8
Glyma.09G230900 Glycine max HOM05D008240 ORTHO05D010333 5.5e-06 53.9 34 73.5
Lsat_1_v5_gn_9_55121 Lactuca sativa HOM05D008240 ORTHO05D010333 7.1e-06 53.5 30 80.0


User provided reference genes

Program Settings