Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p048809 Quercus lobata HOM05D004372 ORTHO05D004331 1.5e-27 125.6 68 100.0
Haze_20817 Corylus avellana HOM05D004372 ORTHO05D004331 1.9e-14 82.0 60 60.0
Prupe.6G257600 Prunus persica HOM05D004372 ORTHO05D004331 3.6e-13 77.8 61 55.7
ClCG10G021220 Citrullus lanatus HOM05D004372 ORTHO05D004331 8.0e-13 76.6 62 58.1
RcHm_v2.0_Chr3g0466321 Rosa chinensis HOM05D004372 ORTHO05D004331 1.8e-12 75.5 65 53.8
Nn2g11160 Nelumbo nucifera HOM05D004372 ORTHO05D004331 2.3e-12 75.1 61 54.1
Cfa017356 Carpinus fangiana HOM05D004372 ORTHO05D004331 3.0e-12 74.7 60 56.7
FAN09G4335 Fragaria x ananassa HOM05D004372 ORTHO05D004331 3.0e-12 74.7 65 53.8
FvH4_6g13440 Fragaria vesca HOM05D004372 ORTHO05D004331 5.2e-12 73.9 65 53.8
FAN14G0518 Fragaria x ananassa HOM05D004372 ORTHO05D004331 5.2e-12 73.9 65 53.8
Sed0010480 Sechium edule HOM05D004372 ORTHO05D004331 5.2e-12 73.9 67 65.7
CsaV3_3G034820 Cucumis sativus L. HOM05D004372 ORTHO05D004331 6.8e-12 73.6 62 66.1
FAN02G2532 Fragaria x ananassa HOM05D004372 ORTHO05D004331 8.8e-12 73.2 66 56.1
Nn2g13398 Nelumbo nucifera HOM05D004372 ORTHO05D004331 1.2e-11 72.8 63 50.8
MD04G1131100 Malus domestica HOM05D004372 ORTHO05D004331 1.5e-11 72.4 61 50.8
THA.LOC109116790 Tarenaya hassleriana HOM05D004372 ORTHO05D004331 2.6e-11 71.6 64 48.4
CANSAT11G2039 Cannabis sativa HOM05D004372 ORTHO05D004331 4.4e-11 70.9 58 56.9
Cpa.g.c34680 Carica papaya HOM05D004372 ORTHO05D004331 7.5e-11 70.1 71 49.3
MD12G1144200 Malus domestica HOM05D004372 ORTHO05D004331 1.3e-10 69.3 59 52.5
MELO3C009251.2 Cucumis melo HOM05D004372 ORTHO05D004331 3.7e-10 67.8 62 64.5
THA.LOC109117276 Tarenaya hassleriana HOM05D004372 ORTHO05D004331 3.7e-10 67.8 66 48.5
CARHR211160 Cardamine hirsuta HOM05D004372 ORTHO05D004331 4.8e-10 67.4 64 57.8
Eucgr.J01238 Eucalyptus grandis HOM05D004372 ORTHO05D004331 4.8e-10 67.4 62 50.0
COL.COLO4_14778 Corchorus olitorius HOM05D004372 ORTHO05D004331 6.3e-10 67.0 61 62.3
FAN05G2794 Fragaria x ananassa HOM05D004372 ORTHO05D004331 1.1e-09 66.2 65 49.2
Thecc.05G037100 Theobroma cacao HOM05D004372 ORTHO05D004331 1.1e-09 66.2 61 62.3
TAR633G2336 Trochodendron aralioides HOM05D004372 ORTHO05D004331 1.1e-09 66.2 64 45.3
TAR636G3128 Trochodendron aralioides HOM05D004372 ORTHO05D004331 1.1e-09 66.2 61 47.5
CiPaw.09G194900 Carya illinoinensis HOM05D004372 ORTHO05D004331 1.4e-09 65.9 58 60.3
Gohir.D09G150300 Gossypium hirsutum HOM05D004372 ORTHO05D004331 1.4e-09 65.9 59 54.2
Gorai.006G171600 Gossypium raimondii HOM05D004372 ORTHO05D004331 1.4e-09 65.9 59 54.2
QL01p030934 Quercus lobata HOM05D004372 ORTHO05D004331 1.8e-09 65.5 59 54.2
Sp6g40230 Schrenkiella parvula HOM05D004372 ORTHO05D004331 2.4e-09 65.1 64 57.8
Aa31LG1G22520 Aethionema arabicum HOM05D004372 ORTHO05D004331 3.1e-09 64.7 62 59.7
Eucgr.K03114 Eucalyptus grandis HOM05D004372 ORTHO05D004331 4.1e-09 64.3 65 63.1
Thecc.09G318100 Theobroma cacao HOM05D004372 ORTHO05D004331 4.1e-09 64.3 66 50.0
Hma1.2p1_0936F.1_g238880 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 5.4e-09 63.9 60 45.0
A10p33400 Brassica napus HOM05D004372 ORTHO05D004331 7.0e-09 63.5 64 45.3
C09p74310 Brassica napus HOM05D004372 ORTHO05D004331 7.0e-09 63.5 64 45.3
BolC9t60164H Brassica oleracea HOM05D004372 ORTHO05D004331 7.0e-09 63.5 64 45.3
Zm00001eb148250 Zea mays HOM05D004372 ORTHO05D004331 7.0e-09 63.5 56 50.0
AL6G11450 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 9.1e-09 63.2 64 56.2
CiPaw.01G289300 Carya illinoinensis HOM05D004372 ORTHO05D004331 9.1e-09 63.2 69 44.9
BraA10t45371Z Brassica rapa HOM05D004372 ORTHO05D004331 1.2e-08 62.8 64 54.7
Duzib150G1613 Durio zibethinus HOM05D004372 ORTHO05D004331 1.2e-08 62.8 66 47.0
Thhalv10015202m.g Eutrema salsugineum HOM05D004372 ORTHO05D004331 1.2e-08 62.8 61 57.4
Os01g0843700 Oryza sativa ssp. japonica HOM05D004372 ORTHO05D004331 1.2e-08 62.8 55 50.9
AT5G02220 Arabidopsis thaliana HOM05D004372 ORTHO05D004331 1.6e-08 62.4 64 56.2
Nitab4.5_0001326g0030 Nicotiana tabacum HOM05D004372 ORTHO05D004331 1.6e-08 62.4 62 59.7
Nitab4.5_0016190g0010 Nicotiana tabacum HOM05D004372 ORTHO05D004331 1.6e-08 62.4 63 60.3
Carub.0006s0106 Capsella rubella HOM05D004372 ORTHO05D004331 2.0e-08 62.0 62 48.4
Gohir.A09G154800 Gossypium hirsutum HOM05D004372 ORTHO05D004331 2.0e-08 62.0 59 52.5
Gorai.009G097700 Gossypium raimondii HOM05D004372 ORTHO05D004331 2.7e-08 61.6 60 63.3
HPP92_019243 Vanilla planifolia HOM05D004372 ORTHO05D004331 2.7e-08 61.6 65 46.2
Atru.chr8.1996 Acer truncatum HOM05D004372 ORTHO05D004331 4.5e-08 60.8 61 59.0
BolC2t06039H Brassica oleracea HOM05D004372 ORTHO05D004331 4.5e-08 60.8 65 46.2
CiPaw.15G088800 Carya illinoinensis HOM05D004372 ORTHO05D004331 4.5e-08 60.8 75 52.0
Oeu026714.1 Olea europaea HOM05D004372 ORTHO05D004331 4.5e-08 60.8 61 49.2
CiPaw.13G091200 Carya illinoinensis HOM05D004372 ORTHO05D004331 5.9e-08 60.5 67 56.7
Gohir.D05G094500 Gossypium hirsutum HOM05D004372 ORTHO05D004331 5.9e-08 60.5 60 61.7
MBI14_g04662_MAGBIO Magnolia biondii HOM05D004372 ORTHO05D004331 5.9e-08 60.5 60 45.0
Manes.09G092400 Manihot esculenta HOM05D004372 ORTHO05D004331 5.9e-08 60.5 73 42.5
Phvul.L007143 Phaseolus vulgaris HOM05D016115 ORTHO05D004331 5.9e-08 60.5 60 56.7
COL.COLO4_18555 Corchorus olitorius HOM05D004372 ORTHO05D004331 1.3e-07 59.3 64 53.1
Duzib106G0317 Durio zibethinus HOM05D004372 ORTHO05D004331 1.3e-07 59.3 61 59.0
MELO3C003142.2 Cucumis melo HOM05D004372 ORTHO05D004331 1.7e-07 58.9 58 43.1
CsaV3_4G025140 Cucumis sativus L. HOM05D004372 ORTHO05D004331 1.7e-07 58.9 58 44.8
TWI74G0654 Tripterygium wilfordii HOM05D004372 ORTHO05D004331 1.7e-07 58.9 61 59.0
BcaNung06028 Brassica carinata HOM05D004372 ORTHO05D004331 2.3e-07 58.5 65 44.6
C02p00390 Brassica napus HOM05D004372 ORTHO05D004331 2.3e-07 58.5 65 44.6
Haze_17088 Corylus avellana HOM05D004372 ORTHO05D004331 2.3e-07 58.5 61 41.0
Gohir.A05G094000 Gossypium hirsutum HOM05D004372 ORTHO05D004331 2.3e-07 58.5 58 51.7
Potri.016G100000 Populus trichocarpa HOM05D004372 ORTHO05D004331 2.3e-07 58.5 53 58.5
PGR004G0648 Punica granatum HOM05D004372 ORTHO05D004331 2.3e-07 58.5 69 52.2
Rhsim04G0158600 Rhododendron simsii HOM05D004372 ORTHO05D004331 2.3e-07 58.5 57 45.6
Atru.chr12.419 Acer truncatum HOM05D004372 ORTHO05D004331 2.9e-07 58.2 59 42.4
Glyma.02G248800 Glycine max HOM05D004372 ORTHO05D004331 2.9e-07 58.2 63 46.0
MBI05_g29695_MAGBIO Magnolia biondii HOM05D000093 ORTHO05D000814 2.9e-07 58.2 64 45.3
TAR623G0224 Trochodendron aralioides HOM05D004372 ORTHO05D004331 2.9e-07 58.2 48 52.1
CAN.G394.69 Capsicum annuum HOM05D004372 ORTHO05D004331 3.8e-07 57.8 57 57.9
Glyma.14G067700 Glycine max HOM05D004372 ORTHO05D004331 3.8e-07 57.8 62 56.5
Lsat_1_v5_gn_8_15240 Lactuca sativa HOM05D004372 ORTHO05D004331 3.8e-07 57.8 56 46.4
Lalb_Chr03g0042351 Lupinus albus HOM05D004372 ORTHO05D004331 3.8e-07 57.8 67 53.7
Cpa.g.sc81.114 Carica papaya HOM05D004372 ORTHO05D004331 5.0e-07 57.4 60 48.3
Lalb_Chr14g0375161 Lupinus albus HOM05D004372 ORTHO05D004331 5.0e-07 57.4 54 68.5
Solyc06g076310.1 Solanum lycopersicum HOM05D004372 ORTHO05D004331 5.0e-07 57.4 59 55.9
Sopen06g032730 Solanum pennellii HOM05D004372 ORTHO05D004331 5.0e-07 57.4 59 55.9
PGSC0003DMG400030326 Solanum tuberosum HOM05D004372 ORTHO05D004331 5.0e-07 57.4 59 55.9
BraA02t04711Z Brassica rapa HOM05D004372 ORTHO05D004331 6.6e-07 57.0 59 45.8
Hma1.2p1_1785F.1_g302220 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 8.6e-07 56.6 62 43.5
Os03g0822400 Oryza sativa ssp. japonica HOM05D004372 ORTHO05D004331 8.6e-07 56.6 70 41.4
MELO3C023871.2 Cucumis melo HOM05D004372 ORTHO05D004331 1.1e-06 56.2 63 41.3
Gorai.012G104900 Gossypium raimondii HOM05D004372 ORTHO05D004331 1.1e-06 56.2 62 45.2
HanXRQChr08g0220931 Helianthus annuus HOM05D004372 ORTHO05D004331 1.5e-06 55.8 58 44.8
MD11G1097200 Malus domestica HOM05D004372 ORTHO05D004331 1.5e-06 55.8 63 42.9
Psat3g139320 Pisum sativum HOM05D017754 ORTHO05D004331 1.9e-06 55.5 61 54.1
Potri.010G201900 Populus trichocarpa HOM05D004372 ORTHO05D004331 2.5e-06 55.1 63 55.6
Cc01_g13170 Coffea canephora HOM05D004372 ORTHO05D004331 3.3e-06 54.7 62 43.5
Sed0017148 Sechium edule HOM05D004372 ORTHO05D004331 5.5e-06 53.9 63 41.3
Lj3g0010706 Lotus japonicus HOM05D004372 ORTHO05D004331 7.2e-06 53.5 64 57.8
Rhsim01G0230700 Rhododendron simsii HOM05D004372 ORTHO05D004331 7.2e-06 53.5 70 50.0


User provided reference genes

Program Settings