Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 3.4e-110 401.7 213 100.0
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 8.1e-104 380.6 213 95.8
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 1.0e-77 293.9 210 74.3
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 2.5e-73 279.3 216 70.4
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 1.0e-61 240.7 211 65.4
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 8.5e-61 237.7 210 62.4
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 8.5e-61 237.7 216 63.9
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 3.6e-59 232.3 211 61.1
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 3.6e-59 232.3 204 61.8
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 6.1e-59 231.5 219 62.6
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 7.9e-59 231.1 212 59.9
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 1.0e-58 230.7 212 59.4
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 1.4e-58 230.3 211 62.6
QL11p041915 Quercus lobata HOM05D005713 ORTHO05D021118 1.4e-58 230.3 140 93.6
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 5.1e-58 228.4 204 61.8
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 8.8e-58 227.6 206 59.2
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 1.1e-57 227.3 211 59.7
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 2.0e-57 226.5 223 59.6
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 1.7e-56 223.4 205 61.0
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 3.7e-56 222.2 204 61.3
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 1.1e-55 220.7 207 60.9
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 1.4e-55 220.3 212 60.4
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 1.4e-55 220.3 210 60.0
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 1.8e-55 219.9 213 56.8
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 2.4e-55 219.5 201 62.2
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 4.1e-55 218.8 210 59.5
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 4.1e-55 218.8 204 56.9
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 5.3e-55 218.4 203 59.1
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 9.1e-55 217.6 185 62.2
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 1.6e-54 216.9 218 61.5
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 5.9e-54 214.9 210 60.5
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 7.7e-54 214.5 207 56.5
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 7.7e-54 214.5 218 56.4
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 5.0e-53 211.8 215 57.7
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 5.0e-53 211.8 210 60.5
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 8.5e-53 211.1 201 61.7
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 2.5e-52 209.5 211 56.9
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 4.2e-52 208.8 206 55.8
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 4.2e-52 208.8 183 63.4
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 9.4e-52 207.6 211 55.0
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 2.7e-51 206.1 165 67.9
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 3.6e-51 205.7 171 62.0
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 6.1e-51 204.9 209 56.5
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 1.0e-50 204.1 197 57.9
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 1.0e-50 204.1 216 56.9
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 1.0e-50 204.1 215 58.6
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 1.0e-50 204.1 211 55.9
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 1.4e-50 203.8 209 57.9
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 1.8e-50 203.4 177 64.4
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 1.8e-50 203.4 170 65.9
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 1.8e-50 203.4 211 56.4
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 2.3e-50 203.0 214 56.1
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 4.0e-50 202.2 215 58.1
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 4.0e-50 202.2 177 63.8
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 4.0e-50 202.2 215 56.3
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 6.7e-50 201.4 215 55.8
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 8.8e-50 201.1 215 55.3
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 8.8e-50 201.1 217 56.7
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.1e-49 200.7 232 54.7
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 2.6e-49 199.5 213 53.5
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 2.6e-49 199.5 180 63.3
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 3.3e-49 199.1 165 63.6
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 5.7e-49 198.4 192 62.5
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 1.7e-48 196.8 217 55.3
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 2.2e-48 196.4 209 57.4
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 2.8e-48 196.1 207 54.6
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 4.8e-48 195.3 215 54.0
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 6.3e-48 194.9 180 58.3
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 8.2e-48 194.5 211 52.6
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 8.2e-48 194.5 169 62.7
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 8.2e-48 194.5 206 54.4
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 4.1e-47 192.2 220 53.2
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 4.1e-47 192.2 202 54.0
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 1.2e-46 190.7 198 58.6
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 2.7e-46 189.5 165 60.0
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 4.5e-46 188.7 213 53.1
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 7.7e-46 188.0 204 54.4
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 1.0e-45 187.6 201 55.7
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 1.0e-45 187.6 200 57.5
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 1.0e-45 187.6 201 55.7
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 1.7e-45 186.8 176 63.1
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 2.2e-45 186.4 200 57.5
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 6.5e-45 184.9 170 60.6
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 1.1e-44 184.1 211 53.1
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 2.5e-44 183.0 201 55.2
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 2.5e-44 183.0 195 54.4
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 2.5e-44 183.0 107 82.2
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 3.2e-44 182.6 107 82.2
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 4.2e-44 182.2 215 51.6
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 7.2e-44 181.4 200 54.0
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 1.2e-43 180.6 144 66.7
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 2.7e-43 179.5 151 65.6
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 2.3e-42 176.4 107 78.5
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 4.4e-41 172.2 149 61.1
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 9.8e-41 171.0 107 76.6
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 9.8e-41 171.0 108 77.8
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 1.3e-40 170.6 165 59.4
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 1.3e-40 170.6 115 70.4
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 4.8e-40 168.7 162 56.2
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 1.5e-36 157.1 212 48.1
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 4.2e-36 155.6 190 45.8
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 6.1e-35 151.8 86 81.4
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 4.0e-34 149.1 73 95.9
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 2.0e-30 136.7 108 58.3
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 5.0e-29 132.1 196 43.4
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 8.6e-29 131.3 171 49.1
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 9.5e-28 127.9 118 57.6
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 1.2e-27 127.5 195 44.1
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 1.0e-26 124.4 102 58.8
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 1.4e-26 124.0 100 64.0
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 3.0e-26 122.9 190 43.7
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 3.4e-25 119.4 103 59.2
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 1.8e-23 113.6 99 56.6
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 3.2e-23 112.8 64 79.7
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 2.0e-22 110.2 191 39.8
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 9.5e-20 101.3 93 54.8
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 2.9e-16 89.7 117 43.6
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 8.3e-16 88.2 92 45.7
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 5.4e-15 85.5 49 75.5
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 2.7e-14 83.2 198 33.3
PGSC0003DMG400003326 Solanum tuberosum HOM05D005713 ORTHO05D021118 7.8e-14 81.6 116 45.7
PGSC0003DMG400019020 Solanum tuberosum HOM05D005713 ORTHO05D021118 9.5e-12 74.7 118 41.5
Actinidia27912 Actinidia chinensis HOM05D005713 ORTHO05D021118 4.0e-10 69.3 145 37.2
Hma1.2p1_0066F.1_g036790 Hydrangea macrophylla HOM05D005713 ORTHO05D021118 9.8e-09 64.7 135 38.5
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 1.4e-07 60.8 37 81.1
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 2.7e-06 56.6 37 78.4
Sopen01g006830 Solanum pennellii HOM05D001773 ORTHO05D001710 6.0e-06 55.5 37 70.3


User provided reference genes

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