Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 5.2e-123 444.5 240 100.0
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 9.1e-120 433.7 240 97.9
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 7.3e-85 317.8 211 76.8
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 5.0e-78 295.0 209 74.6
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 2.8e-76 289.3 208 76.9
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 2.3e-75 286.2 213 77.0
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 8.9e-75 284.3 207 74.9
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 1.5e-74 283.5 210 71.0
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 4.4e-74 282.0 214 75.7
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 7.5e-74 281.2 207 76.3
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 7.5e-74 281.2 207 76.3
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 7.5e-74 281.2 208 75.5
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.3e-73 280.4 207 76.3
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 2.2e-73 279.6 207 74.9
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 6.4e-73 278.1 213 73.2
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 6.4e-73 278.1 213 73.2
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 8.3e-73 277.7 226 69.9
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.4e-72 276.2 214 73.4
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 2.4e-72 276.2 213 73.2
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 5.4e-72 275.0 217 74.7
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 7.1e-72 274.6 206 70.4
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 7.1e-72 274.6 206 70.4
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 9.2e-72 274.2 212 71.2
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 9.2e-72 274.2 207 74.4
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 2.1e-71 273.1 211 66.8
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 6.6e-70 268.1 211 76.3
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 4.3e-69 265.4 212 68.9
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 4.3e-69 265.4 209 73.7
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 4.3e-69 265.4 212 67.9
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 1.6e-68 263.5 211 73.9
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 1.6e-68 263.5 214 66.8
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 6.2e-68 261.5 211 70.1
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.4e-67 260.4 212 66.5
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 2.3e-67 259.6 211 69.7
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 2.3e-67 259.6 208 69.2
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 3.1e-67 259.2 199 65.8
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 8.9e-67 257.7 215 70.2
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.2e-66 257.3 212 66.0
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.5e-66 256.9 200 70.0
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 2.6e-66 256.1 202 74.3
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 9.9e-66 254.2 206 62.6
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 2.9e-65 252.7 216 66.7
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 6.4e-65 251.5 224 63.4
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 8.4e-65 251.1 210 67.6
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 8.4e-65 251.1 207 68.1
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 3.2e-64 249.2 219 66.7
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 4.1e-64 248.8 206 64.6
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 4.1e-64 248.8 211 66.4
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 5.4e-64 248.4 202 70.3
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 9.2e-64 247.7 208 62.0
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 1.6e-63 246.9 208 62.0
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 2.1e-63 246.5 228 63.2
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.1e-63 246.5 200 72.0
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 2.1e-63 246.5 206 62.1
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 2.7e-63 246.1 213 72.3
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 4.6e-63 245.4 207 61.4
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 6.0e-63 245.0 223 65.9
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 7.8e-63 244.6 209 66.0
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 1.3e-62 243.8 209 62.2
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 1.3e-62 243.8 219 67.1
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 1.7e-62 243.4 208 62.0
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 3.0e-62 242.7 223 58.7
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 3.9e-62 242.3 224 64.3
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 5.1e-62 241.9 206 59.7
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 5.1e-62 241.9 212 67.0
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 6.6e-62 241.5 217 70.0
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 8.6e-62 241.1 209 62.2
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 1.1e-61 240.7 224 63.8
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 5.6e-61 238.4 210 64.8
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 7.3e-61 238.0 222 61.7
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 2.1e-60 236.5 231 57.6
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 2.1e-60 236.5 206 65.5
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 3.6e-60 235.7 212 57.5
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 4.7e-60 235.3 206 61.2
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 4.7e-60 235.3 215 64.2
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 8.1e-60 234.6 199 66.3
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 1.8e-59 233.4 208 63.5
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 1.8e-59 233.4 212 62.7
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 3.1e-59 232.6 222 61.7
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 3.1e-59 232.6 210 65.7
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 4.0e-59 232.3 201 66.2
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 6.9e-59 231.5 209 63.2
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 1.5e-58 230.3 213 62.0
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 2.0e-58 229.9 209 62.7
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 2.0e-58 229.9 209 63.6
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 3.4e-58 229.2 206 63.6
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 7.6e-58 228.0 185 73.5
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 1.3e-57 227.3 209 63.2
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 1.3e-57 227.3 209 63.2
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 1.7e-57 226.9 236 64.0
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 2.2e-57 226.5 206 64.1
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 2.9e-57 226.1 213 58.2
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 4.9e-57 225.3 208 59.6
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 6.4e-57 224.9 218 58.7
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 4.2e-56 222.2 200 63.5
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 5.4e-56 221.9 212 61.3
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 3.5e-55 219.2 159 74.2
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 4.6e-55 218.8 220 55.0
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 5.1e-54 215.3 216 56.0
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 8.7e-54 214.5 211 60.7
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.5e-53 213.8 199 67.3
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 1.9e-53 213.4 212 58.0
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 1.6e-52 210.3 210 56.2
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 6.9e-51 204.9 215 57.7
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 9.0e-51 204.5 161 72.0
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 2.0e-50 203.4 226 56.6
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 2.6e-50 203.0 198 59.6
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 3.8e-49 199.1 141 75.9
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 3.8e-49 199.1 214 54.7
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 1.1e-48 197.6 217 56.2
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 3.2e-48 196.1 215 56.3
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 1.2e-47 194.1 205 57.1
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 2.2e-41 173.3 215 53.5
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 2.9e-41 172.9 214 45.3
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 2.9e-41 172.9 196 56.1
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 6.4e-41 171.8 139 64.7
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.4e-40 170.6 185 53.5
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 2.7e-39 166.4 186 50.0
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 3.0e-38 162.9 216 42.1
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 8.2e-36 154.8 208 40.9
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 8.2e-36 154.8 142 61.3
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 1.1e-35 154.5 178 46.6
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 3.1e-35 152.9 196 45.9
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 6.9e-35 151.8 224 45.5
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 2.6e-34 149.8 205 40.0
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.6e-34 149.8 212 45.3
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 5.8e-34 148.7 115 73.9
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 1.3e-33 147.5 214 47.2
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 1.9e-32 143.7 193 43.5
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 2.5e-32 143.3 122 56.6
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 2.5e-32 143.3 136 55.9
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 5.5e-32 142.1 195 44.6
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 2.3e-30 136.7 121 49.6
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 6.7e-30 135.2 209 44.5
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.8e-27 127.1 140 50.0
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 4.1e-27 125.9 106 60.4
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.2e-26 124.4 125 57.6
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 1.5e-26 124.0 91 56.0
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 4.5e-26 122.5 125 56.8
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 2.9e-25 119.8 199 40.2
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 3.8e-25 119.4 205 39.0
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.9e-24 117.1 137 44.5
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 7.2e-24 115.2 84 53.6
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 3.9e-22 109.4 87 55.2
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 1.5e-21 107.5 86 48.8
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 2.5e-21 106.7 215 40.9
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 2.2e-20 103.6 110 51.8
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 3.1e-19 99.8 86 48.8
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 5.3e-19 99.0 87 48.3
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 5.3e-19 99.0 86 47.7
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 3.4e-18 96.3 107 51.4
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 5.0e-17 92.4 99 46.5
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 6.1e-15 85.5 167 38.9
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 1.0e-14 84.7 116 43.1
C06p21580 Brassica napus HOM05D004429 ORTHO05D021447 2.8e-12 76.6 73 58.9
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 1.4e-11 74.3 90 50.0
BolC6t37347H Brassica oleracea HOM05D004429 ORTHO05D021447 5.3e-11 72.4 73 57.5
CiPaw.05G236000 Carya illinoinensis HOM05D004429 ORTHO05D005583 3.2e-08 63.2 79 50.6
Oeu041536.1 Olea europaea HOM05D004429 ORTHO05D288779 3.6e-07 59.7 93 38.7
AT4G18692 Arabidopsis thaliana HOM05D004429 ORTHO05D021447 3.0e-06 56.6 65 55.4
Ah.00g000610 Amaranthus hybridus HOM05D004429 ORTHO05D005583 5.2e-06 55.8 76 43.4
AT3G53342 Arabidopsis thaliana HOM05D004429 ORTHO05D021447 6.7e-06 55.5 65 55.4


User provided reference genes

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