Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p047090 Quercus lobata HOM05D003425 ORTHO05D003897 1.3e-97 359.8 180 100.0
QL02p009392 Quercus lobata HOM05D003425 ORTHO05D003897 2.1e-89 332.4 180 94.4
QL02p009285 Quercus lobata HOM05D003425 ORTHO05D003897 1.2e-87 326.6 169 96.4
Haze_22537 Corylus avellana HOM05D003425 ORTHO05D003897 3.7e-81 305.1 180 83.9
Cfa013863 Carpinus fangiana HOM05D003425 ORTHO05D003897 2.2e-78 295.8 180 82.8
CiPaw.07G158500 Carya illinoinensis HOM05D003425 ORTHO05D003897 4.3e-74 281.6 180 77.8
Dinv36112 Davidia involucrata HOM05D003425 ORTHO05D003897 4.8e-73 278.1 180 74.4
MD15G1023500 Malus domestica HOM05D003425 ORTHO05D003897 1.2e-71 273.5 180 75.0
Prupe.1G375600 Prunus persica HOM05D003425 ORTHO05D003897 2.6e-71 272.3 180 74.4
GSVIVG01009755001 Vitis vinifera HOM05D003425 ORTHO05D003897 3.4e-71 271.9 180 72.8
MD08G1026900 Malus domestica HOM05D003425 ORTHO05D003897 1.0e-70 270.4 180 73.9
Duzib093G1530 Durio zibethinus HOM05D003425 ORTHO05D003897 1.3e-70 270.0 180 73.9
Prupe.1G549800 Prunus persica HOM05D003425 ORTHO05D003897 6.5e-70 267.7 180 73.3
ClCG08G014810 Citrullus lanatus HOM05D003425 ORTHO05D003897 5.5e-69 264.6 180 71.7
CsaV3_2G028930 Cucumis sativus L. HOM05D003425 ORTHO05D003897 1.6e-68 263.1 180 71.1
Thecc.08G031800 Theobroma cacao HOM05D003425 ORTHO05D003897 1.6e-68 263.1 180 71.7
FvH4_2g39440 Fragaria vesca HOM05D003425 ORTHO05D003897 6.1e-68 261.2 180 68.9
Manes.05G156100 Manihot esculenta HOM05D003425 ORTHO05D003897 6.1e-68 261.2 180 70.0
MELO3C010962.2 Cucumis melo HOM05D003425 ORTHO05D003897 7.9e-68 260.8 180 70.0
Sed0012207 Sechium edule HOM05D003425 ORTHO05D003897 7.9e-68 260.8 180 70.6
RcHm_v2.0_Chr6g0301531 Rosa chinensis HOM05D003425 ORTHO05D003897 1.0e-67 260.4 180 70.6
FAN20G1443 Fragaria x ananassa HOM05D003425 ORTHO05D003897 5.1e-67 258.1 180 67.8
TAR625G0421 Trochodendron aralioides HOM05D003425 ORTHO05D003897 6.7e-67 257.7 180 70.6
CSS0009417 Camellia sinensis var. sinensis HOM05D003425 ORTHO05D003897 8.7e-67 257.3 180 68.9
Lalb_Chr22g0354631 Lupinus albus HOM05D003425 ORTHO05D003897 8.7e-67 257.3 180 70.6
Glyma.04G030000 Glycine max HOM05D003425 ORTHO05D003897 1.1e-66 256.9 179 71.5
Duzib041G0299 Durio zibethinus HOM05D003425 ORTHO05D003897 1.5e-66 256.5 180 70.0
FAN27G0002 Fragaria x ananassa HOM05D003425 ORTHO05D003897 1.5e-66 256.5 180 67.8
Medtr3g112130 Medicago truncatula HOM05D003425 ORTHO05D003897 1.9e-66 256.1 180 70.0
Ca_15494_v3 Cicer arietinum L. HOM05D003425 ORTHO05D003897 9.7e-66 253.8 180 71.1
Glyma.06G030100 Glycine max HOM05D003425 ORTHO05D003897 9.7e-66 253.8 179 70.9
COL.COLO4_26258 Corchorus olitorius HOM05D003425 ORTHO05D003897 1.3e-65 253.4 180 68.9
Gohir.A06G008100 Gossypium hirsutum HOM05D003425 ORTHO05D003897 1.3e-65 253.4 180 68.9
Gohir.D06G003800 Gossypium hirsutum HOM05D003425 ORTHO05D003897 1.3e-65 253.4 180 68.9
Gorai.010G008400 Gossypium raimondii HOM05D003425 ORTHO05D003897 1.3e-65 253.4 180 68.9
TWI56G1347 Tripterygium wilfordii HOM05D003425 ORTHO05D003897 1.3e-65 253.4 180 67.8
Gohir.D05G195200 Gossypium hirsutum HOM05D003425 ORTHO05D003897 1.6e-65 253.1 180 70.0
Gorai.009G200000 Gossypium raimondii HOM05D003425 ORTHO05D003897 1.6e-65 253.1 180 70.0
Lj1g0002363 Lotus japonicus HOM05D003425 ORTHO05D003897 1.6e-65 253.1 180 69.4
Gohir.A05G191900 Gossypium hirsutum HOM05D003425 ORTHO05D003897 2.2e-65 252.7 180 69.4
Hma1.2p1_0775F.1_g216480 Hydrangea macrophylla HOM05D003425 ORTHO05D003897 3.7e-65 251.9 180 67.2
Manes.18G020000 Manihot esculenta HOM05D003425 ORTHO05D003897 3.7e-65 251.9 180 66.1
Potri.005G230200 Populus trichocarpa HOM05D003425 ORTHO05D003897 6.3e-65 251.1 180 68.3
Rhsim06G0029700 Rhododendron simsii HOM05D003425 ORTHO05D003897 1.8e-64 249.6 180 65.6
Cpa.g.sc104.107 Carica papaya HOM05D003425 ORTHO05D003897 4.1e-64 248.4 180 67.8
Lalb_Chr23g0266531 Lupinus albus HOM05D003425 ORTHO05D003897 4.1e-64 248.4 180 68.3
Atru.chr13.426 Acer truncatum HOM05D003425 ORTHO05D003897 5.3e-64 248.1 180 68.9
Potri.002G032900 Populus trichocarpa HOM05D003425 ORTHO05D003897 5.3e-64 248.1 180 68.3
Ciclev10001170m.g Citrus clementina HOM05D003425 ORTHO05D003897 6.9e-64 247.7 180 70.0
Phvul.009G060100 Phaseolus vulgaris HOM05D003425 ORTHO05D003897 1.5e-63 246.5 179 68.7
Actinidia22523 Actinidia chinensis HOM05D003425 ORTHO05D003897 2.0e-63 246.1 180 66.1
Nitab4.5_0005911g0010 Nicotiana tabacum HOM05D003425 ORTHO05D003897 2.0e-63 246.1 180 65.0
VMungo1309G3095 Vigna mungo HOM05D003425 ORTHO05D003897 2.0e-63 246.1 179 67.6
Psat5g016160 Pisum sativum HOM05D003425 ORTHO05D003897 2.6e-63 245.7 180 67.8
TPR.G12467 Trifolium pratense HOM05D003425 ORTHO05D003897 2.6e-63 245.7 180 68.9
Nn5g29685 Nelumbo nucifera HOM05D003425 ORTHO05D003897 3.4e-63 245.4 179 67.6
vmacro13340 Vaccinium macrocarpon HOM05D003425 ORTHO05D003897 1.0e-62 243.8 180 66.1
Aqoxy6G01168 Aquilegia oxysepala HOM05D003425 ORTHO05D003897 3.8e-62 241.9 180 63.9
Sed0022647 Sechium edule HOM05D003425 ORTHO05D003897 3.8e-62 241.9 180 65.6
CANSAT80G1124 Cannabis sativa HOM05D003425 ORTHO05D003897 6.5e-62 241.1 180 66.1
Ca_18048_v3 Cicer arietinum L. HOM05D003425 ORTHO05D003897 8.5e-62 240.7 180 66.1
Nitab4.5_0003682g0010 Nicotiana tabacum HOM05D003425 ORTHO05D003897 8.5e-62 240.7 180 63.9
arahy.Tifrunner.gnm1.ann1.2UC4WV Arachis hypogaea HOM05D003425 ORTHO05D003897 1.9e-61 239.6 180 67.8
Sc26g0003500 Simmondsia chinensis HOM05D003425 ORTHO05D003897 1.9e-61 239.6 180 65.0
arahy.Tifrunner.gnm1.ann1.2NS234 Arachis hypogaea HOM05D003425 ORTHO05D003897 2.5e-61 239.2 180 67.8
Lj5g0018838 Lotus japonicus HOM05D003425 ORTHO05D003897 3.2e-61 238.8 180 66.1
CSS0020037 Camellia sinensis var. sinensis HOM05D003425 ORTHO05D003897 1.2e-60 236.9 170 67.6
Cc10_g02550 Coffea canephora HOM05D003425 ORTHO05D003897 1.2e-60 236.9 180 61.7
Lsat_1_v5_gn_5_3401 Lactuca sativa HOM05D003425 ORTHO05D003897 2.7e-60 235.7 180 66.1
ECA246G1007 Erigeron canadensis HOM05D003425 ORTHO05D003897 6.1e-60 234.6 180 65.0
THA.LOC104814145 Tarenaya hassleriana HOM05D003425 ORTHO05D003897 7.9e-60 234.2 180 64.4
CAN.G710.1 Capsicum annuum HOM05D003425 ORTHO05D003897 1.0e-59 233.8 180 64.4
AUR62014493 Chenopodium quinoa HOM05D003425 ORTHO05D003897 1.0e-59 233.8 180 62.2
Sopen04g034260 Solanum pennellii HOM05D003425 ORTHO05D003897 1.0e-59 233.8 181 63.5
TPR.G14394 Trifolium pratense HOM05D003425 ORTHO05D003897 1.0e-59 233.8 180 63.9
Solyc04g080670.3 Solanum lycopersicum HOM05D003425 ORTHO05D003897 1.4e-59 233.4 181 63.5
PGSC0003DMG400003698 Solanum tuberosum HOM05D003425 ORTHO05D003897 1.8e-59 233.0 181 63.0
Glyma.14G072200 Glycine max HOM05D003425 ORTHO05D003897 3.0e-59 232.3 180 66.7
vmacro21674 Vaccinium macrocarpon HOM05D003425 ORTHO05D003897 3.0e-59 232.3 170 64.7
Lj2A96T68 Lonicera japonica HOM05D003425 ORTHO05D003897 3.9e-59 231.9 198 59.6
Cpa.g.sc99.35 Carica papaya HOM05D003425 ORTHO05D003897 5.1e-59 231.5 180 63.3
HanXRQChr05g0151701 Helianthus annuus HOM05D003425 ORTHO05D003897 5.1e-59 231.5 180 62.2
Lj4A789T47 Lonicera japonica HOM05D003425 ORTHO05D003897 5.1e-59 231.5 180 63.3
Peaxi162Scf00140g00065 Petunia axillaris HOM05D003425 ORTHO05D003897 5.1e-59 231.5 180 63.3
arahy.Tifrunner.gnm1.ann1.X2SRZK Arachis hypogaea HOM05D003425 ORTHO05D003897 1.1e-58 230.3 180 65.0
ClCG05G018770 Citrullus lanatus HOM05D003425 ORTHO05D003897 1.1e-58 230.3 180 64.4
Peaxi162Scf00028g00119 Petunia axillaris HOM05D003425 ORTHO05D003897 1.1e-58 230.3 180 62.2
Rhsim07G0021500 Rhododendron simsii HOM05D003425 ORTHO05D003897 1.1e-58 230.3 169 67.5
DCAR_009967 Daucus carota HOM05D003425 ORTHO05D003897 2.0e-58 229.6 182 62.6
Phvul.001G012200 Phaseolus vulgaris HOM05D003425 ORTHO05D003897 2.0e-58 229.6 180 65.6
Sed0018986 Sechium edule HOM05D003425 ORTHO05D003897 2.0e-58 229.6 180 63.9
Psat6g009400 Pisum sativum HOM05D003425 ORTHO05D003897 2.6e-58 229.2 180 62.8
VMungo0647G0080 Vigna mungo HOM05D003425 ORTHO05D003897 2.6e-58 229.2 180 65.6
PGR031G1797 Punica granatum HOM05D003425 ORTHO05D003897 3.3e-58 228.8 180 60.6
SalBow7G0662 Salvia bowleyana HOM05D003425 ORTHO05D003897 3.3e-58 228.8 180 60.0
Medtr1g022475 Medicago truncatula HOM05D003425 ORTHO05D003897 4.4e-58 228.4 180 65.0
arahy.Tifrunner.gnm1.ann1.P3QKDQ Arachis hypogaea HOM05D003425 ORTHO05D003897 5.7e-58 228.0 180 64.4
Sp2g07500 Schrenkiella parvula HOM05D003425 ORTHO05D003897 1.7e-57 226.5 180 62.8
Thhalv10007647m.g Eutrema salsugineum HOM05D003425 ORTHO05D003897 2.2e-57 226.1 181 59.7
ECA233G5099 Erigeron canadensis HOM05D003425 ORTHO05D003897 2.8e-57 225.7 180 58.9
Lsat_1_v5_gn_6_69620 Lactuca sativa HOM05D003425 ORTHO05D003897 2.8e-57 225.7 183 59.6
Oeu063611.1 Olea europaea HOM05D003425 ORTHO05D003897 2.8e-57 225.7 179 61.5
Sp1g19600 Schrenkiella parvula HOM05D003425 ORTHO05D003897 2.8e-57 225.7 182 58.2
Hund17177 Selenicereus undatus HOM05D003425 ORTHO05D003897 3.7e-57 225.3 180 60.6
Rhsim07G0021300 Rhododendron simsii HOM05D003425 ORTHO05D003897 4.8e-57 224.9 178 64.0
MELO3C003802.2 Cucumis melo HOM05D003425 ORTHO05D003897 6.3e-57 224.6 180 63.3
MBI10_g00770_MAGBIO Magnolia biondii HOM05D003425 ORTHO05D003897 8.2e-57 224.2 184 62.0
Aa31LG7G6080 Aethionema arabicum HOM05D003425 ORTHO05D003897 1.1e-56 223.8 180 58.9
BraA09t37609Z Brassica rapa HOM05D003425 ORTHO05D003897 1.1e-56 223.8 182 62.6
AUR62038045 Chenopodium quinoa HOM05D003425 ORTHO05D003897 1.4e-56 223.4 170 62.4
AUR62044165 Chenopodium quinoa HOM05D003425 ORTHO05D003897 1.4e-56 223.4 170 62.4
PSO675G3885 Papaver somniferum HOM05D003425 ORTHO05D003897 1.4e-56 223.4 180 60.0
CsaV3_3G045400 Cucumis sativus L. HOM05D003425 ORTHO05D003897 1.8e-56 223.0 180 62.2
BcaB07g31042 Brassica carinata HOM05D003425 ORTHO05D003897 2.4e-56 222.6 182 63.2
Oeu030423.1 Olea europaea HOM05D003425 ORTHO05D003897 2.4e-56 222.6 179 62.6
PSO541G3967 Papaver somniferum HOM05D003425 ORTHO05D003897 2.4e-56 222.6 180 60.0
A09p20000 Brassica napus HOM05D003425 ORTHO05D003897 3.1e-56 222.2 180 61.7
C09p25370 Brassica napus HOM05D003425 ORTHO05D003897 3.1e-56 222.2 180 61.7
DCAR_017527 Daucus carota HOM05D003425 ORTHO05D003897 4.1e-56 221.9 182 58.2
Carub.0001s2165 Capsella rubella HOM05D003425 ORTHO05D003897 5.3e-56 221.5 181 58.0
Eucgr.F01873 Eucalyptus grandis HOM05D003425 ORTHO05D003897 1.5e-55 219.9 180 60.0
Thhalv10003206m.g Eutrema salsugineum HOM05D003425 ORTHO05D003897 2.6e-55 219.2 180 60.0
BolC9t55437H Brassica oleracea HOM05D003425 ORTHO05D003897 4.5e-55 218.4 180 61.1
THA.LOC104813817 Tarenaya hassleriana HOM05D003425 ORTHO05D003897 4.5e-55 218.4 180 59.4
BcaC04g21968 Brassica carinata HOM05D003425 ORTHO05D003897 1.0e-54 217.2 182 61.5
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 1.0e-54 217.2 182 56.0
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 1.3e-54 216.9 182 56.6
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 1.3e-54 216.9 182 56.0
SalBow2G1759 Salvia bowleyana HOM05D003425 ORTHO05D003897 1.3e-54 216.9 180 59.4
AT1G22100 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 2.2e-54 216.1 180 58.3
BolC8t49775H Brassica oleracea HOM05D003425 ORTHO05D003897 2.2e-54 216.1 182 56.0
AL8G18220 Arabidopsis lyrata HOM05D003425 ORTHO05D003897 2.9e-54 215.7 180 61.7
Aa31LG9G12880 Aethionema arabicum HOM05D003425 ORTHO05D003897 3.8e-54 215.3 180 61.1
AL1G35540 Arabidopsis lyrata HOM05D003425 ORTHO05D003897 5.0e-54 214.9 180 58.9
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 6.5e-54 214.5 182 55.5
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 6.5e-54 214.5 182 55.5
SGA_v2.0_scaffold201G41381 Striga asiatica HOM05D003425 ORTHO05D003897 8.5e-54 214.2 192 54.2
Migut.C00703 Erythranthe guttata HOM05D003425 ORTHO05D003897 1.1e-53 213.8 181 58.0
CARHR181460 Cardamine hirsuta HOM05D003425 ORTHO05D003897 1.4e-53 213.4 180 60.6
CARHR022450 Cardamine hirsuta HOM05D003425 ORTHO05D003897 7.2e-53 211.1 185 55.7
Carub.0008s0609 Capsella rubella HOM05D003425 ORTHO05D003897 3.6e-52 208.8 180 59.4
Zm00001eb067500 Zea mays HOM05D003425 ORTHO05D003897 7.9e-52 207.6 180 57.2
Migut.C00755 Erythranthe guttata HOM05D003425 ORTHO05D003897 1.0e-51 207.2 180 55.6
AL2G17640 Arabidopsis lyrata HOM05D003425 ORTHO05D003897 1.4e-51 206.8 182 54.9
AT5G42810 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 1.4e-51 206.8 180 59.4
AT1G58643 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 1.1e-50 203.8 182 54.4
AT1G58936 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 1.1e-50 203.8 182 54.4
AT1G59312 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 1.1e-50 203.8 182 54.4
Os04g0661200 Oryza sativa ssp. japonica HOM05D003425 ORTHO05D003897 1.5e-50 203.4 180 54.4
HanXRQChr08g0236251 Helianthus annuus HOM05D003425 ORTHO05D003897 7.4e-50 201.1 182 55.5
Zm00001eb432760 Zea mays HOM05D003425 ORTHO05D003897 2.2e-49 199.5 181 56.4
Carub.0002s0599 Capsella rubella HOM05D003425 ORTHO05D003897 4.1e-48 195.3 182 52.7
EL10Ac1g00639 Beta vulgaris HOM05D003425 ORTHO05D003897 2.2e-46 189.5 165 57.0
Ah.05g176930 Amaranthus hybridus HOM05D003425 ORTHO05D003897 1.9e-45 186.4 170 54.1
ATR0568G131 Amborella trichopoda HOM05D003425 ORTHO05D003897 2.1e-44 183.0 183 54.1
CDE02G1177 Ceratophyllum demersum HOM05D003425 ORTHO05D003897 2.3e-43 179.5 180 48.9
CDE06G1246 Ceratophyllum demersum HOM05D003425 ORTHO05D003897 3.0e-43 179.1 180 48.3
SHI08133 Sapria himalayana HOM05D003425 ORTHO05D003897 1.5e-42 176.8 180 52.8
SEGI_21240 Sequoiadendron giganteum HOM05D003425 ORTHO05D003897 3.7e-41 172.2 190 48.4
SEGI_18330 Sequoiadendron giganteum HOM05D003425 ORTHO05D003897 5.3e-40 168.3 190 47.4
arahy.Tifrunner.gnm1.ann1.PN9ZPA Arachis hypogaea HOM05D008068 ORTHO05D003897 1.7e-38 163.3 128 65.6
PGSC0003DMG400015950 Solanum tuberosum HOM05D003425 ORTHO05D003897 4.4e-34 148.7 117 60.7
Lsat_1_v5_gn_0_45760 Lactuca sativa HOM05D003425 ORTHO05D003897 4.5e-31 138.7 106 65.1
SMO200G0117 Selaginella moellendorffii HOM05D003425 ORTHO05D003897 1.2e-28 130.6 190 41.6
Pp3c14_17850 Physcomitrium patens HOM05D003425 ORTHO05D003897 1.2e-26 124.0 215 37.7
Pp3c1_36100 Physcomitrium patens HOM05D003425 ORTHO05D003897 1.2e-26 124.0 210 39.0
Rhsim05G0103100 Rhododendron simsii HOM05D003425 ORTHO05D003897 2.0e-26 123.2 98 62.2
AagrBONN_evm.TU.Sc2ySwM_362.197 Anthoceros agrestis HOM05D003425 ORTHO05D003897 4.4e-26 122.1 184 37.5
Cc00_g02970 Coffea canephora HOM05D003425 ORTHO05D003897 3.7e-25 119.0 123 48.8
Mapoly0027s0125 Marchantia polymorpha HOM05D003425 ORTHO05D003897 4.9e-25 118.6 211 37.4
Mapoly0027s0188 Marchantia polymorpha HOM05D003425 ORTHO05D003897 1.2e-23 114.0 216 36.1
AUR62019450 Chenopodium quinoa HOM05D003425 ORTHO05D003897 1.0e-22 110.9 112 51.8
Sc26g0003780 Simmondsia chinensis HOM05D003425 ORTHO05D003897 1.6e-20 103.6 104 49.0
Sc26g0003700 Simmondsia chinensis HOM05D003425 ORTHO05D003897 2.8e-20 102.8 104 49.0
SEGI_34796 Sequoiadendron giganteum HOM05D003425 ORTHO05D003897 8.9e-19 97.8 108 48.1
CBR_g22893 Chara braunii HOM05D000019 ORTHO05D000002 7.5e-18 94.7 233 30.5
TAR628G0427 Trochodendron aralioides HOM05D003425 ORTHO05D003897 9.8e-18 94.4 85 60.0
C07p21730 Brassica napus HOM05D003425 ORTHO05D003897 3.4e-10 69.3 48 66.7
BolC7t42703H Brassica oleracea HOM05D003425 ORTHO05D003897 3.4e-10 69.3 48 66.7
Rhsim05G0129700 Rhododendron simsii HOM05D003425 ORTHO05D003897 7.5e-10 68.2 126 35.7
TAR628G1429 Trochodendron aralioides HOM05D003425 ORTHO05D003897 6.6e-06 55.1 36 66.7


User provided reference genes

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