Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p047083 Quercus lobata HOM05D003425 ORTHO05D003897 1.6e-94 349.4 170 100.0
QL02p009389 Quercus lobata HOM05D003425 ORTHO05D003897 1.7e-48 196.4 175 63.4
CiPaw.07G158500 Carya illinoinensis HOM05D003425 ORTHO05D003897 1.7e-35 153.3 171 51.5
Cfa013863 Carpinus fangiana HOM05D003425 ORTHO05D003897 1.4e-29 133.7 173 49.1
Haze_22537 Corylus avellana HOM05D003425 ORTHO05D003897 1.8e-29 133.3 173 49.1
Prupe.1G549800 Prunus persica HOM05D003425 ORTHO05D003897 8.9e-29 131.0 172 45.3
MD08G1026900 Malus domestica HOM05D003425 ORTHO05D003897 2.0e-28 129.8 171 48.0
Lj2A96T68 Lonicera japonica HOM05D003425 ORTHO05D003897 2.6e-28 129.4 181 42.0
Prupe.1G375600 Prunus persica HOM05D003425 ORTHO05D003897 2.6e-28 129.4 172 44.2
Dinv36112 Davidia involucrata HOM05D003425 ORTHO05D003897 3.4e-28 129.0 171 45.0
MD15G1023500 Malus domestica HOM05D003425 ORTHO05D003897 4.4e-28 128.6 171 47.4
FvH4_2g39440 Fragaria vesca HOM05D003425 ORTHO05D003897 7.6e-28 127.9 176 44.3
RcHm_v2.0_Chr6g0301531 Rosa chinensis HOM05D003425 ORTHO05D003897 2.9e-27 125.9 172 44.2
FAN20G1443 Fragaria x ananassa HOM05D003425 ORTHO05D003897 3.8e-27 125.6 174 45.4
Hma1.2p1_0775F.1_g216480 Hydrangea macrophylla HOM05D003425 ORTHO05D003897 6.4e-27 124.8 171 45.6
Lalb_Chr23g0266531 Lupinus albus HOM05D003425 ORTHO05D003897 8.4e-27 124.4 172 43.6
TAR625G0421 Trochodendron aralioides HOM05D003425 ORTHO05D003897 1.1e-26 124.0 171 46.2
Lj1g0002363 Lotus japonicus HOM05D003425 ORTHO05D003897 1.9e-26 123.2 176 41.5
FAN27G0002 Fragaria x ananassa HOM05D003425 ORTHO05D003897 2.4e-26 122.9 174 44.3
vmacro21674 Vaccinium macrocarpon HOM05D003425 ORTHO05D003897 3.2e-26 122.5 174 43.1
Ah.05g176930 Amaranthus hybridus HOM05D003425 ORTHO05D003897 4.1e-26 122.1 163 47.2
Actinidia22523 Actinidia chinensis HOM05D003425 ORTHO05D003897 7.1e-26 121.3 176 43.2
CSS0020037 Camellia sinensis var. sinensis HOM05D003425 ORTHO05D003897 7.1e-26 121.3 184 41.3
Manes.18G020000 Manihot esculenta HOM05D003425 ORTHO05D003897 7.1e-26 121.3 170 42.4
MBI10_g00770_MAGBIO Magnolia biondii HOM05D003425 ORTHO05D003897 9.2e-26 120.9 172 46.5
Hund17177 Selenicereus undatus HOM05D003425 ORTHO05D003897 9.2e-26 120.9 178 43.3
Ca_15494_v3 Cicer arietinum L. HOM05D003425 ORTHO05D003897 1.2e-25 120.6 162 43.8
Nn5g29685 Nelumbo nucifera HOM05D003425 ORTHO05D003897 1.2e-25 120.6 186 44.1
TWI56G1347 Tripterygium wilfordii HOM05D003425 ORTHO05D003897 1.6e-25 120.2 179 44.1
CANSAT80G1124 Cannabis sativa HOM05D003425 ORTHO05D003897 3.5e-25 119.0 171 42.1
Rhsim06G0029700 Rhododendron simsii HOM05D003425 ORTHO05D003897 3.5e-25 119.0 188 41.5
Duzib093G1530 Durio zibethinus HOM05D003425 ORTHO05D003897 4.6e-25 118.6 174 42.5
Psat5g016160 Pisum sativum HOM05D003425 ORTHO05D003897 7.8e-25 117.9 174 42.5
Phvul.001G012200 Phaseolus vulgaris HOM05D003425 ORTHO05D003897 2.3e-24 116.3 175 40.6
vmacro13340 Vaccinium macrocarpon HOM05D003425 ORTHO05D003897 2.3e-24 116.3 176 40.3
Glyma.04G030000 Glycine max HOM05D003425 ORTHO05D003897 3.0e-24 115.9 178 42.1
GSVIVG01009755001 Vitis vinifera HOM05D003425 ORTHO05D003897 3.0e-24 115.9 178 43.3
Glyma.14G072200 Glycine max HOM05D003425 ORTHO05D003897 5.1e-24 115.2 175 41.7
Atru.chr13.426 Acer truncatum HOM05D003425 ORTHO05D003897 6.6e-24 114.8 183 39.9
Manes.05G156100 Manihot esculenta HOM05D003425 ORTHO05D003897 8.6e-24 114.4 170 42.4
Psat6g200440 Pisum sativum HOM05D003425 ORTHO05D003897 1.5e-23 113.6 173 39.3
Gohir.A05G191900 Gossypium hirsutum HOM05D003425 ORTHO05D003897 1.9e-23 113.2 178 39.3
Lj5g0018838 Lotus japonicus HOM05D003425 ORTHO05D003897 1.9e-23 113.2 173 40.5
COL.COLO4_26258 Corchorus olitorius HOM05D003425 ORTHO05D003897 2.5e-23 112.8 182 39.6
TPR.G12467 Trifolium pratense HOM05D003425 ORTHO05D003897 3.3e-23 112.5 174 40.2
Phvul.009G060100 Phaseolus vulgaris HOM05D003425 ORTHO05D003897 5.6e-23 111.7 173 39.3
CSS0009417 Camellia sinensis var. sinensis HOM05D003425 ORTHO05D003897 7.3e-23 111.3 178 41.0
Medtr1g022475 Medicago truncatula HOM05D003425 ORTHO05D003897 7.3e-23 111.3 173 39.3
Thecc.08G031800 Theobroma cacao HOM05D003425 ORTHO05D003897 9.6e-23 110.9 174 39.1
Gohir.D05G195200 Gossypium hirsutum HOM05D003425 ORTHO05D003897 1.2e-22 110.5 174 39.1
Gorai.009G200000 Gossypium raimondii HOM05D003425 ORTHO05D003897 1.2e-22 110.5 174 39.1
AUR62014493 Chenopodium quinoa HOM05D003425 ORTHO05D003897 1.6e-22 110.2 171 42.1
Cpa.g.sc99.35 Carica papaya HOM05D003425 ORTHO05D003897 2.1e-22 109.8 172 39.0
Migut.C00755 Erythranthe guttata HOM05D003425 ORTHO05D003897 2.1e-22 109.8 170 40.6
PSO541G3967 Papaver somniferum HOM05D003425 ORTHO05D003897 2.1e-22 109.8 178 38.8
PSO675G3885 Papaver somniferum HOM05D003425 ORTHO05D003897 2.1e-22 109.8 178 38.8
THA.LOC104813817 Tarenaya hassleriana HOM05D003425 ORTHO05D003897 2.1e-22 109.8 183 37.7
Duzib041G0299 Durio zibethinus HOM05D003425 ORTHO05D003897 2.8e-22 109.4 179 38.5
Lj4A789T47 Lonicera japonica HOM05D003425 ORTHO05D003897 2.8e-22 109.4 171 40.9
Eucgr.F01873 Eucalyptus grandis HOM05D003425 ORTHO05D003897 3.6e-22 109.0 171 41.5
Glyma.06G030100 Glycine max HOM05D003425 ORTHO05D003897 3.6e-22 109.0 178 40.4
Medtr3g112130 Medicago truncatula HOM05D003425 ORTHO05D003897 3.6e-22 109.0 173 39.9
Nitab4.5_0003682g0010 Nicotiana tabacum HOM05D003425 ORTHO05D003897 3.6e-22 109.0 174 40.8
SGA_v2.0_scaffold201G41381 Striga asiatica HOM05D003425 ORTHO05D003897 3.6e-22 109.0 179 40.2
TPR.G14394 Trifolium pratense HOM05D003425 ORTHO05D003897 3.6e-22 109.0 173 39.3
ECA233G5099 Erigeron canadensis HOM05D003425 ORTHO05D003897 8.1e-22 107.8 181 37.6
HanXRQChr05g0151701 Helianthus annuus HOM05D003425 ORTHO05D003897 8.1e-22 107.8 178 39.9
CsaV3_3G045400 Cucumis sativus L. HOM05D003425 ORTHO05D003897 1.1e-21 107.5 177 36.2
Lalb_Chr22g0354631 Lupinus albus HOM05D003425 ORTHO05D003897 1.1e-21 107.5 172 40.1
arahy.Tifrunner.gnm1.ann1.2UC4WV Arachis hypogaea HOM05D003425 ORTHO05D003897 1.4e-21 107.1 171 39.8
arahy.Tifrunner.gnm1.ann1.P3QKDQ Arachis hypogaea HOM05D003425 ORTHO05D003897 1.4e-21 107.1 171 37.4
Ca_18048_v3 Cicer arietinum L. HOM05D003425 ORTHO05D003897 1.4e-21 107.1 117 46.2
VMungo1309G3095 Vigna mungo HOM05D003425 ORTHO05D003897 1.4e-21 107.1 174 39.7
Cc10_g02550 Coffea canephora HOM05D003425 ORTHO05D003897 1.8e-21 106.7 175 40.0
arahy.Tifrunner.gnm1.ann1.2NS234 Arachis hypogaea HOM05D003425 ORTHO05D003897 2.4e-21 106.3 171 39.8
arahy.Tifrunner.gnm1.ann1.X2SRZK Arachis hypogaea HOM05D003425 ORTHO05D003897 2.4e-21 106.3 171 37.4
MELO3C003802.2 Cucumis melo HOM05D003425 ORTHO05D003897 2.4e-21 106.3 173 37.0
SalBow2G1759 Salvia bowleyana HOM05D003425 ORTHO05D003897 2.4e-21 106.3 170 39.4
SalBow7G0662 Salvia bowleyana HOM05D003425 ORTHO05D003897 2.4e-21 106.3 174 38.5
VMungo0647G2373 Vigna mungo HOM05D003425 ORTHO05D003897 2.4e-21 106.3 180 40.0
Rhsim07G0021400 Rhododendron simsii HOM05D003425 ORTHO05D003897 5.2e-21 105.1 176 38.6
Sc26g0003500 Simmondsia chinensis HOM05D003425 ORTHO05D003897 5.2e-21 105.1 171 42.1
Cpa.g.sc104.107 Carica papaya HOM05D003425 ORTHO05D003897 6.9e-21 104.8 173 38.7
CDE02G1177 Ceratophyllum demersum HOM05D003425 ORTHO05D003897 6.9e-21 104.8 169 40.2
Nitab4.5_0005911g0010 Nicotiana tabacum HOM05D003425 ORTHO05D003897 6.9e-21 104.8 171 39.8
Potri.002G032900 Populus trichocarpa HOM05D003425 ORTHO05D003897 8.9e-21 104.4 171 37.4
CsaV3_2G028930 Cucumis sativus L. HOM05D003425 ORTHO05D003897 1.2e-20 104.0 171 39.8
Potri.005G230200 Populus trichocarpa HOM05D003425 ORTHO05D003897 1.5e-20 103.6 170 38.2
DCAR_009967 Daucus carota HOM05D003425 ORTHO05D003897 2.0e-20 103.2 174 39.1
Migut.C00703 Erythranthe guttata HOM05D003425 ORTHO05D003897 2.0e-20 103.2 170 40.0
THA.LOC104814145 Tarenaya hassleriana HOM05D003425 ORTHO05D003897 2.0e-20 103.2 177 38.4
DCAR_017527 Daucus carota HOM05D003425 ORTHO05D003897 4.4e-20 102.1 174 41.4
ECA246G1007 Erigeron canadensis HOM05D003425 ORTHO05D003897 7.6e-20 101.3 177 38.4
Gohir.A06G008100 Gossypium hirsutum HOM05D003425 ORTHO05D003897 7.6e-20 101.3 175 36.6
Gohir.D06G003800 Gossypium hirsutum HOM05D003425 ORTHO05D003897 7.6e-20 101.3 175 36.6
Gorai.010G008400 Gossypium raimondii HOM05D003425 ORTHO05D003897 7.6e-20 101.3 175 36.6
Lsat_1_v5_gn_6_69620 Lactuca sativa HOM05D003425 ORTHO05D003897 7.6e-20 101.3 174 39.7
Aqoxy6G01168 Aquilegia oxysepala HOM05D003425 ORTHO05D003897 9.9e-20 100.9 175 40.6
AL1G35540 Arabidopsis lyrata HOM05D003425 ORTHO05D003897 9.9e-20 100.9 175 37.1
MELO3C010962.2 Cucumis melo HOM05D003425 ORTHO05D003897 9.9e-20 100.9 171 40.4
QL02p009285 Quercus lobata HOM05D003425 ORTHO05D003897 1.3e-19 100.5 49 98.0
CDE06G1246 Ceratophyllum demersum HOM05D003425 ORTHO05D003897 2.9e-19 99.4 170 38.8
Lsat_1_v5_gn_5_3401 Lactuca sativa HOM05D003425 ORTHO05D003897 2.9e-19 99.4 175 37.7
Oeu063611.1 Olea europaea HOM05D003425 ORTHO05D003897 2.9e-19 99.4 170 39.4
Ciclev10001170m.g Citrus clementina HOM05D003425 ORTHO05D003897 3.8e-19 99.0 178 36.5
BcaC04g21968 Brassica carinata HOM05D003425 ORTHO05D003897 4.9e-19 98.6 174 36.8
ClCG08G014810 Citrullus lanatus HOM05D003425 ORTHO05D003897 6.4e-19 98.2 171 38.6
Sed0012207 Sechium edule HOM05D003425 ORTHO05D003897 6.4e-19 98.2 172 40.1
Solyc04g080670.3 Solanum lycopersicum HOM05D003425 ORTHO05D003897 6.4e-19 98.2 171 38.6
AL61U10010 Arabidopsis lyrata HOM05D003425 ORTHO05D003897 8.4e-19 97.8 178 36.0
A09p20000 Brassica napus HOM05D003425 ORTHO05D003897 8.4e-19 97.8 179 36.3
Peaxi162Scf00028g00119 Petunia axillaris HOM05D003425 ORTHO05D003897 1.1e-18 97.4 118 42.4
EL10Ac1g00639 Beta vulgaris HOM05D003425 ORTHO05D003897 1.4e-18 97.1 118 44.9
C09p25370 Brassica napus HOM05D003425 ORTHO05D003897 1.4e-18 97.1 174 36.2
BraA09t37609Z Brassica rapa HOM05D003425 ORTHO05D003897 1.4e-18 97.1 179 36.3
AUR62044165 Chenopodium quinoa HOM05D003425 ORTHO05D003897 1.9e-18 96.7 171 38.6
AT1G22100 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 2.4e-18 96.3 175 35.4
Psat6g009400 Pisum sativum HOM05D003425 ORTHO05D003897 2.4e-18 96.3 136 41.2
PGR031G1797 Punica granatum HOM05D003425 ORTHO05D003897 2.4e-18 96.3 118 44.9
BolC9t55437H Brassica oleracea HOM05D003425 ORTHO05D003897 3.2e-18 95.9 174 35.6
Sed0018986 Sechium edule HOM05D003425 ORTHO05D003897 3.2e-18 95.9 177 34.5
CARHR022450 Cardamine hirsuta HOM05D003425 ORTHO05D003897 4.2e-18 95.5 172 35.5
Aa31LG9G12880 Aethionema arabicum HOM05D003425 ORTHO05D003897 5.4e-18 95.1 183 35.5
CAN.G710.1 Capsicum annuum HOM05D003425 ORTHO05D003897 5.4e-18 95.1 171 36.8
HanXRQChr08g0236251 Helianthus annuus HOM05D003425 ORTHO05D003897 5.4e-18 95.1 179 38.5
BcaB07g31042 Brassica carinata HOM05D003425 ORTHO05D003897 7.1e-18 94.7 180 35.0
Sp1g19600 Schrenkiella parvula HOM05D003425 ORTHO05D003897 7.1e-18 94.7 173 37.6
Sp2g07500 Schrenkiella parvula HOM05D003425 ORTHO05D003897 7.1e-18 94.7 179 34.6
AT5G42810 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 9.3e-18 94.4 183 35.0
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 9.3e-18 94.4 171 37.4
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 9.3e-18 94.4 171 37.4
Carub.0008s0609 Capsella rubella HOM05D003425 ORTHO05D003897 9.3e-18 94.4 183 35.0
Psat7g245960 Pisum sativum HOM05D003425 ORTHO05D003897 9.3e-18 94.4 164 36.0
Sopen04g034260 Solanum pennellii HOM05D003425 ORTHO05D003897 1.2e-17 94.0 171 38.0
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 1.6e-17 93.6 171 37.4
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 1.6e-17 93.6 171 37.4
Thhalv10007647m.g Eutrema salsugineum HOM05D003425 ORTHO05D003897 1.6e-17 93.6 173 37.0
ATR0568G131 Amborella trichopoda HOM05D003425 ORTHO05D003897 2.1e-17 93.2 117 47.0
PGSC0003DMG400003698 Solanum tuberosum HOM05D003425 ORTHO05D003897 2.1e-17 93.2 171 37.4
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 3.5e-17 92.4 171 36.8
Aa31LG7G6080 Aethionema arabicum HOM05D003425 ORTHO05D003897 6.0e-17 91.7 175 35.4
Thhalv10003206m.g Eutrema salsugineum HOM05D003425 ORTHO05D003897 1.0e-16 90.9 180 32.2
Carub.0001s2165 Capsella rubella HOM05D003425 ORTHO05D003897 1.3e-16 90.5 175 34.3
Carub.0002s0599 Capsella rubella HOM05D003425 ORTHO05D003897 3.0e-16 89.4 175 36.0
BolC8t49775H Brassica oleracea HOM05D003425 ORTHO05D003897 1.1e-15 87.4 171 36.3
PGSC0003DMG400015950 Solanum tuberosum HOM05D003425 ORTHO05D003897 1.1e-15 87.4 164 37.8
AL8G18220 Arabidopsis lyrata HOM05D003425 ORTHO05D003897 2.5e-15 86.3 118 39.8
ClCG05G018770 Citrullus lanatus HOM05D003425 ORTHO05D003897 1.3e-14 84.0 151 37.7
AL2G17640 Arabidopsis lyrata HOM05D003425 ORTHO05D003897 1.6e-14 83.6 175 32.6
SEGI_18330 Sequoiadendron giganteum HOM05D003425 ORTHO05D003897 2.8e-14 82.8 171 33.9
AUR62038045 Chenopodium quinoa HOM05D003425 ORTHO05D003897 3.6e-14 82.4 118 39.0
Peaxi162Scf00140g00065 Petunia axillaris HOM05D003425 ORTHO05D003897 3.6e-14 82.4 137 34.3
Zm00001eb432760 Zea mays HOM05D003425 ORTHO05D003897 4.0e-13 79.0 174 34.5
AT1G58643 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 5.3e-13 78.6 179 31.3
AT1G58936 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 5.3e-13 78.6 179 31.3
AT1G59312 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 5.3e-13 78.6 179 31.3
HPP92_003107 Vanilla planifolia HOM05D003425 ORTHO05D003897 5.3e-13 78.6 172 31.4
Sed0022647 Sechium edule HOM05D003425 ORTHO05D003897 1.2e-12 77.4 120 41.7
SHI08133 Sapria himalayana HOM05D003425 ORTHO05D003897 9.9e-12 74.3 121 38.8
VMungo0647G0080 Vigna mungo HOM05D003425 ORTHO05D003897 1.3e-11 73.9 47 70.2
Zm00001eb067500 Zea mays HOM05D003425 ORTHO05D003897 1.7e-11 73.6 170 32.9
Os04g0661200 Oryza sativa ssp. japonica HOM05D003425 ORTHO05D003897 3.8e-11 72.4 171 32.7
SMO200G0117 Selaginella moellendorffii HOM05D003425 ORTHO05D003897 3.8e-11 72.4 163 33.1
Lsat_1_v5_gn_0_45760 Lactuca sativa HOM05D003425 ORTHO05D003897 1.6e-09 67.0 47 63.8
Pp3c14_17850 Physcomitrium patens HOM05D003425 ORTHO05D003897 5.1e-08 62.0 178 26.4
Oeu047510.1 Olea europaea HOM05D003425 ORTHO05D003897 8.7e-08 61.2 138 37.0
C07p21730 Brassica napus HOM05D003425 ORTHO05D003897 4.3e-07 58.9 159 32.1
BolC7t42703H Brassica oleracea HOM05D003425 ORTHO05D003897 4.3e-07 58.9 159 32.1
Oeu030423.1 Olea europaea HOM05D003425 ORTHO05D003897 1.3e-06 57.4 93 41.9
Pp3c1_36100 Physcomitrium patens HOM05D003425 ORTHO05D003897 1.3e-06 57.4 188 25.5


User provided reference genes

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